Rmu_sc0002398.1_g000002

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002398.1
OG0017464
Physical Location & Seq
Reverse (-)
10808 .. 11143
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002398.1_g000002.1.cds

Sequence Viewer

Length: 336 bp
atgagggaaacctttcttcaatataaccccttcaacccttcggagttcaaaccaaatctagatctgcagggttctcccatcatctccgtctccattcctaaacaagatctactttttcctcctcttcttctaattttcgatttctctcctcttagtgttttcaatcttttgggtgactgtttcagtaaggataagatcatctcccatcacttgtcatctagggatggccgattcgtcgtcgttttggagaaatcgtgctatattcagttcgagtacttggtgtactacgagagccgcatcaccggaaagctgagctacggtacgatccgaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

111

Amino Acids

12.86

Weight (kDa)

6.71

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 295
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 226
AfaI GTAC 3 cut(s) 275, 284, 322
AgsI TTSAA 4 cut(s) 20, 34, 49, 163
AluBI AGCT 2 cut(s) 310, 315
AluI AGCT 2 cut(s) 310, 315
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 185, 292
BccI CCATC 3 cut(s) 86, 213, 218
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 59, 219
BfmI CTRYAG 1 cut(s) 65
BglII AGATCT 2 cut(s) 61, 106
BisI GCNGC 1 cut(s) 295
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 296
BmcAI AGTACT 1 cut(s) 275
BmsI GCATC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse8I GATNNNNATC 1 cut(s) 329
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 329
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 111, 138
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 4 cut(s) 61, 106, 195, 324
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 1 cut(s) 319
BssMI GATC 4 cut(s) 61, 106, 195, 324
Bst4CI ACNGT 2 cut(s) 179, 320
Bst6I CTCTTC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 152, 311
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 64, 109, 198, 327
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 61, 106, 195, 324
BstSFI CTRYAG 1 cut(s) 65
BstX2I RGATCY 2 cut(s) 61, 106
BstYI RGATCY 2 cut(s) 61, 106
BsuRI GGCC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 229
Csp6I GTAC 3 cut(s) 274, 283, 321
CviJI RGCY 4 cut(s) 228, 294, 310, 315
CviKI_1 RGCY 4 cut(s) 228, 294, 310, 315
CviQI GTAC 3 cut(s) 274, 283, 321
DdeI CTNAG 2 cut(s) 152, 311
DpnI GATC 4 cut(s) 63, 108, 197, 326
DpnII GATC 4 cut(s) 61, 106, 195, 324
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 94
FaiI YATR 2 cut(s) 24, 261
FalI AAGNNNNNCTT 2 cut(s) 96, 128
Fnu4HI GCNGC 1 cut(s) 295
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 295
FspBI CTAG 2 cut(s) 59, 219
GluI GCNGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 303
HinfI GANTC 2 cut(s) 231, 330
HpaII CCGG 1 cut(s) 303
HphI GGTGA 2 cut(s) 185, 292
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 43, 329, 335
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 2 cut(s) 239, 242
HpyAV CCTTC 2 cut(s) 40, 48
HpyCH4III ACNGT 2 cut(s) 179, 320
HpyCH4V TGCA 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 152, 311
Kzo9I GATC 4 cut(s) 61, 106, 195, 324
LpnPI CCDG 2 cut(s) 53, 316
LweI GCATC 1 cut(s) 306
MaeI CTAG 2 cut(s) 59, 219
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 63, 108, 197, 326
MboI GATC 4 cut(s) 61, 106, 195, 324
MboII GAAGA 3 cut(s) 8, 116, 119
MflI RGATCY 2 cut(s) 61, 106
MluCI AATT 1 cut(s) 132
MnlI CCTC 3 cut(s) 129, 132, 159
MroXI GAANNNNTTC 1 cut(s) 12
MspI CCGG 1 cut(s) 303
NdeII GATC 4 cut(s) 61, 106, 195, 324
NmuCI GTSAC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 231, 330
PkrI GCNGC 1 cut(s) 296
PstI CTGCAG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 61, 106
RsaI GTAC 3 cut(s) 275, 284, 322
RsaNI GTAC 3 cut(s) 274, 283, 321
SatI GCNGC 1 cut(s) 295
Sau3AI GATC 4 cut(s) 61, 106, 195, 324
ScaI AGTACT 1 cut(s) 275
SetI ASST 3 cut(s) 14, 312, 317
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 295
SspMI CTAG 2 cut(s) 59, 219
TaaI ACNGT 2 cut(s) 179, 320
TaqI TCGA 2 cut(s) 138, 270
TasI AATT 1 cut(s) 132
TatI WGTACW 2 cut(s) 273, 282
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 2 cut(s) 231, 330
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 59, 219
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.