Rmu_sc0000942.1_g000035

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000942.1
OG0017464
Physical Location & Seq
Forward (+)
193622 .. 193963
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000942.1_g000035.1.cds

Sequence Viewer

Length: 342 bp
atgagggaaaactttcttcaatataaccccttcaacccttcagagttcaaacccaatctagatctgcaggtttcccccatcatctccctctccgtctccattcctaaacaagatctacttttttctcctcttcttctaattttagatctctctcctcttagtgttttcaatcttctgggtgactgttgcagtaaggataagatcgtctcccatcacttgtcagctaggaatggccgattcgtcgtcgttttggagaaaccgtgctatattcagttcgagtacttggtgtactacgagagccgcatcaccagaaagctgagctacggcgcgatccgaatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

113

Amino Acids

13.04

Weight (kDa)

8.48

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 301
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 2 cut(s) 281, 290
AgsI TTSAA 4 cut(s) 20, 34, 49, 169
AluBI AGCT 3 cut(s) 224, 316, 321
AluI AGCT 3 cut(s) 224, 316, 321
Alw26I GTCTC 2 cut(s) 100, 211
AlwI GGATC 1 cut(s) 325
AoxI GGCC 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 191, 298
BccI CCATC 2 cut(s) 86, 219
BceAI ACGGC 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 100, 211
BfaI CTAG 2 cut(s) 59, 225
BfmI CTRYAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 58
BglII AGATCT 3 cut(s) 61, 112, 145
BisI GCNGC 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 281
BmsI GCATC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse8I GATNNNNATC 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 335
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 117, 144
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 100, 211
BsmBI CGTCTC 2 cut(s) 100, 211
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 5 cut(s) 61, 112, 145, 201, 330
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 309
BspFNI CGCG 1 cut(s) 329
BspMAI CTGCAG 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 1 cut(s) 325
BssMI GATC 5 cut(s) 61, 112, 145, 201, 330
Bst4CI ACNGT 2 cut(s) 185, 261
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 158, 317
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 5 cut(s) 64, 115, 148, 204, 333
BstMAI GTCTC 2 cut(s) 100, 211
BstMBI GATC 5 cut(s) 61, 112, 145, 201, 330
BstSFI CTRYAG 1 cut(s) 65
BstUI CGCG 1 cut(s) 329
BstX2I RGATCY 3 cut(s) 61, 112, 145
BstYI RGATCY 3 cut(s) 61, 112, 145
BsuRI GGCC 1 cut(s) 234
BveI ACCTGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 280, 289
CviJI RGCY 5 cut(s) 224, 234, 300, 316, 321
CviKI_1 RGCY 5 cut(s) 224, 234, 300, 316, 321
CviQI GTAC 2 cut(s) 280, 289
DdeI CTNAG 2 cut(s) 158, 317
DpnI GATC 5 cut(s) 63, 114, 147, 203, 332
DpnII GATC 5 cut(s) 61, 112, 145, 201, 330
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 24
Esp3I CGTCTC 2 cut(s) 100, 211
FaiI YATR 2 cut(s) 24, 267
FalI AAGNNNNNCTT 2 cut(s) 102, 134
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 59, 225
GlaI GCGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 234
HhaI GCGC 1 cut(s) 329
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 2 cut(s) 237, 336
HphI GGTGA 2 cut(s) 191, 298
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 43, 335
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 2 cut(s) 245, 248
HpyAV CCTTC 2 cut(s) 40, 48
HpyCH4III ACNGT 2 cut(s) 185, 261
HpyCH4V TGCA 2 cut(s) 67, 189
HpyF3I CTNAG 2 cut(s) 158, 317
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 5 cut(s) 61, 112, 145, 201, 330
LpnPI CCDG 3 cut(s) 53, 161, 322
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 59, 225
MaeIII GTNAC 1 cut(s) 179
MalI GATC 5 cut(s) 63, 114, 147, 203, 332
MboI GATC 5 cut(s) 61, 112, 145, 201, 330
MboII GAAGA 4 cut(s) 8, 122, 125, 164
MflI RGATCY 3 cut(s) 61, 112, 145
MluCI AATT 1 cut(s) 138
MnlI CCTC 3 cut(s) 98, 138, 165
MroXI GAANNNNTTC 1 cut(s) 12
MvnI CGCG 1 cut(s) 329
NdeII GATC 5 cut(s) 61, 112, 145, 201, 330
NmuCI GTSAC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 237, 336
PkrI GCNGC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 69
PsuI RGATCY 3 cut(s) 61, 112, 145
RsaI GTAC 2 cut(s) 281, 290
RsaNI GTAC 2 cut(s) 280, 289
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 5 cut(s) 61, 112, 145, 201, 330
ScaI AGTACT 1 cut(s) 281
SetI ASST 4 cut(s) 72, 226, 318, 323
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 59, 225
TaaI ACNGT 2 cut(s) 185, 261
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 138
TatI WGTACW 2 cut(s) 279, 288
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 2 cut(s) 237, 336
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 82
XbaI TCTAGA 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 2 cut(s) 59, 225
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.