Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008835.1

Orthogroup ID

OG0017464

Physical Location & Seq

Genomic Coordinates Forward (+)

45312 .. 45852

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008835.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgagggaaaactttcttcaatataaccccttcaacccttcggagttcaaacccaatctagatctgcaggcttctcccatcatctccctctccgtctccattcctaaacaagatctacttttttctcctcttcttctaattttcgatctctctcctcttagtgttttcaatcttctgggtgactgttgcattcgagtacttggtgtactacgagagccgcatcaccggaaagctgagctacggcgcggtccgaatctgaagggcattcaggtacaaagattgttcttttggtttgtcgtggatgagattagggtcgatttgctgctggctgatagtatttacttcaccgttgggatcatcaacaaaagctcgatgtcgatcagttccagaatgttcattcttgccgggacgggctttcgggtacgggtacaggttccgtttcttgcctcgggtcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

152

Amino Acids

17.29

Weight (kDa)

9.69

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017464)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8088364.1_g000001 Rmu_sc0000560.1_g000018 Rmu_sc0000942.1_g000035 Rmu_sc0001715.1_g000007 Rmu_sc0002398.1_g000002 Rmu_sc0004583.1_g000012 Rmu_sc0006269.1_g000033 Rmu_sc0008835.1_g000010 Rmu_sc0010103.1_g000008
rosa_rugosa	Rorug04G0299000 Rorug06G0164400
rosa_samantha	Rh6CG472300 Rh6CG505200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	218, 246
AclWI	GGATC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	5 cut(s)	198, 207, 273, 423, 429
AgsI	TTSAA	4 cut(s)	20, 34, 49, 169
AluBI	AGCT	3 cut(s)	233, 238, 369
AluI	AGCT	3 cut(s)	233, 238, 369
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	448
ApeKI	GCWGC	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	3 cut(s)	191, 215, 337
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	65
BglII	AGATCT	2 cut(s)	61, 112
BisI	GCNGC	2 cut(s)	218, 323
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	2 cut(s)	219, 324
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	229
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	117, 144
BseXI	GCAGC	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	226, 405
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	2 cut(s)	189, 264
BsoBI	CYCGRG	1 cut(s)	448
Bsp143I	GATC	5 cut(s)	61, 112, 145, 354, 378
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	218, 246
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	69
BspPI	GGATC	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	5 cut(s)	61, 112, 145, 354, 378
Bst4CI	ACNGT	2 cut(s)	185, 349
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	69, 327
BstDEI	CTNAG	2 cut(s)	158, 234
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	5 cut(s)	64, 115, 148, 357, 381
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	5 cut(s)	61, 112, 145, 354, 378
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	61, 112
BstYI	RGATCY	2 cut(s)	61, 112
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	69, 327
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	248
CpoI	CGGWCCG	1 cut(s)	248
Csp6I	GTAC	5 cut(s)	197, 206, 272, 422, 428
CspI	CGGWCCG	1 cut(s)	248
CviJI	RGCY	7 cut(s)	71, 217, 233, 238, 329, 369, 414
CviKI_1	RGCY	7 cut(s)	71, 217, 233, 238, 329, 369, 414
CviQI	GTAC	5 cut(s)	197, 206, 272, 422, 428
DdeI	CTNAG	2 cut(s)	158, 234
DpnI	GATC	5 cut(s)	63, 114, 147, 356, 380
DpnII	GATC	5 cut(s)	61, 112, 145, 354, 378
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	1 cut(s)	24
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	218, 323
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	218, 323
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	218, 323
HapII	CCGG	2 cut(s)	226, 405
HhaI	GCGC	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	226, 405
HphI	GGTGA	3 cut(s)	191, 215, 337
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	43, 252, 258
Hpy188III	TCNNGA	2 cut(s)	59, 387
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	40, 48, 253
HpyCH4III	ACNGT	2 cut(s)	185, 349
HpyCH4V	TGCA	2 cut(s)	67, 189
HpyF3I	CTNAG	2 cut(s)	158, 234
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	61, 112, 145, 354, 378
LpnPI	CCDG	8 cut(s)	53, 161, 239, 254, 311, 400, 416, 418
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	5 cut(s)	63, 114, 147, 356, 380
MboI	GATC	5 cut(s)	61, 112, 145, 354, 378
MboII	GAAGA	4 cut(s)	8, 122, 125, 164
MflI	RGATCY	2 cut(s)	61, 112
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	4 cut(s)	98, 138, 165, 457
MroXI	GAANNNNTTC	1 cut(s)	12
MspI	CCGG	2 cut(s)	226, 405
MspR9I	CCNGG	1 cut(s)	406
Mva1269I	GAATGC	2 cut(s)	189, 264
MvnI	CGCG	1 cut(s)	246
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	61, 112, 145, 354, 378
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	179
PctI	GAATGC	2 cut(s)	189, 264
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	219, 324
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	248
PstI	CTGCAG	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	61, 112
RsaI	GTAC	5 cut(s)	198, 207, 273, 423, 429
RsaNI	GTAC	5 cut(s)	197, 206, 272, 422, 428
Rsr2I	CGGWCCG	1 cut(s)	248
RsrII	CGGWCCG	1 cut(s)	248
SatI	GCNGC	2 cut(s)	218, 323
Sau3AI	GATC	5 cut(s)	61, 112, 145, 354, 378
Sau96I	GGNCC	1 cut(s)	248
ScaI	AGTACT	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	406
SetI	ASST	5 cut(s)	235, 240, 273, 371, 435
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	218, 246
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	185, 349
TaqI	TCGA	5 cut(s)	144, 193, 315, 371, 377
TasI	AATT	1 cut(s)	138
TatI	WGTACW	2 cut(s)	196, 205
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	385
TspGWI	ACGGA	2 cut(s)	82, 426
VpaK11BI	GGWCC	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.