Rmu_sc0000573.1_g000001

Chloride channel protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000573.1
Physical Location & Seq
Forward (+)
1 .. 3965
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000573.1_g000001.1.cds

Sequence Viewer

Length: 1911 bp
gtacatgttatacacgaatgggcctgggctggtactccaactgaaggtgctgcatggctccgtctgcagagactgggcgatacttggcatcgaatacttttagtacccgtcacaggtggggttattgttggcatgatgcatggtttacttgaaatattggatcaaataagacagttaagttcctcccaagggaaaggatttgatttactagctggagtctttcccacaataaaggctgtccaggcagctatcacactaggtactggttgttctttaggtcctgaaggccctagtgtagatattggaaaatcatgtgccaatgggttctcattaatgatggaaaacaacagagaaaggaagattgccctcattgcagcaggtgctgctgctggaatttcttcaggatttaatgcggcagttgctggttgtttctttgctattgaaacggtgctaaggccacttcgagcagaaaactctcctccttttactaccgcaatgattatattggcttctgttatatcgtccacagtatctaatgttttacttgggacgcaatcagcctttacagtgcctgtttacgatttgaaatcagctgctgaattgcccctctaccttatattgggcatgctatgtggtgctgtgagtgtagtcttcaatcgcttggttgcttggttcacaaagttttttgattatatcaaggaaagatttggccttcctgcagttgcatgccctgctttaggtggtttaggagctgggttgattgctctcaagtatccaggaattctgtactggggtttcacaaatgttgaagaaatcctgcatactggaaagactgcttccgcccctggaatctggctgttaactcaattatcagcagccaaagttgtagcaacagctttatgcaagggttctgggcttgtaggtggactttatgcaccaagcttgatgattggggctgctgttggcgctgtatttgggggttcagctgcagaattgattaattcagcaattccaggaaatgctgccgttgctcagccacaggcatatgcactggtgggaatggctgctatgctggcttcagtttgttcggtgccattgacgtcagttctccttctgtttgagctgacaaaagattaccgaatattgcttcctctcatgggggcggttggattggcaatttgggttccctctgtggtaaaccagggaaaggagactgaagcatctgatacacggaattctgcgagaggttactcttctgtttcagctgctgaagagaaagatgaagttatttggagacaacatgataatggagatgatatggaactgtctaccatggggaatacttctgattctgaattaactgaagaaatgcttctggagaatctaaaggtttcgcgggccatgtcaaagaattatgtgaaggtttctctgaccgtaactattgaagaggcaataaaatccatgcatgacaagcatcagaattgtgtgttaattgttgatgatgaagattttctggagggaatattgacatatggtgatgttagacggtatcaatcaaggaagtcttctgatacgttgaagatcgattctagttttctggatgaaaacacctgtcttgtttcctctgtatgtactcgagaaatcagctttcatgggcgaacccgaggtctattaacctgttatccggacacgggtttattaatggccaaggagctaatggaggcaaaagatatcaagcagttgcctgtggttaagcgtggcagacaaccaccaaaagaaacgaggcgaagacttgttgctattcttcattacgattcaatcttgatgtgtctcagggaggagataaatcacaggaaatcaattcatcaacatagaaaagagaatcttgacgaaataacaaatggccactaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

636

Amino Acids

68.51

Weight (kDa)

6.31

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
AatII GACGTC 1 cut(s) 1103
Acc36I ACCTGC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 1090
AccI GTMKAC 1 cut(s) 1328
AccII CGCG 1 cut(s) 1396
AccIII TCCGGA 1 cut(s) 1684
AciI CCGC 5 cut(s) 413, 492, 840, 1163, 1396
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 2 cut(s) 1704, 1903
AcsI RAATTY 3 cut(s) 393, 780, 1234
AcuI CTGAAG 7 cut(s) 63, 303, 384, 1062, 1236, 1290, 1383
AcyI GRCGYC 1 cut(s) 1100
AfaI GTAC 6 cut(s) 3, 34, 105, 262, 788, 1633
AfiI CCNNNNNNNGG 8 cut(s) 44, 113, 189, 619, 737, 1157, 1207, 1691
AflIII ACRYGT 1 cut(s) 4
AgsI TTSAA 8 cut(s) 152, 443, 586, 655, 809, 1445, 1579, 1818
AjnI CCWGG 6 cut(s) 23, 240, 775, 844, 1012, 1200
Alw26I GTCTC 4 cut(s) 64, 1205, 1288, 1835
AlwI GGATC 1 cut(s) 168
AlwNI CAGNNNCTG 6 cut(s) 73, 383, 422, 572, 596, 1268
Ama87I CYCGRG 2 cut(s) 1635, 1662
Aor13HI TCCGGA 1 cut(s) 1684
AoxI GGCC 7 cut(s) 21, 286, 455, 709, 1398, 1704, 1903
ApoI RAATTY 3 cut(s) 393, 780, 1234
ArsI GACNNNNNNTTYG 2 cut(s) 1651, 1683
AseI ATTAAT 3 cut(s) 332, 999, 1700
Asp700I GAANNNNTTC 3 cut(s) 397, 1371, 1509
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 4 cut(s) 21, 278, 287, 1398
AsuHPI GGTGA 1 cut(s) 1547
AvaI CYCGRG 2 cut(s) 1635, 1662
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 2 cut(s) 1706, 1905
BanI GGYRCC 1 cut(s) 1090
BbsI GAAGAC 3 cut(s) 643, 1557, 1795
BccI CCATC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 1010
BciT130I CCWGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
BciVI GTATCC 1 cut(s) 783
BcoDI GTCTC 4 cut(s) 64, 1205, 1288, 1835
BfaI CTAG 4 cut(s) 209, 257, 291, 1590
BfmI CTRYAG 3 cut(s) 65, 717, 987
BfoI RGCGCY 1 cut(s) 969
BfuAI ACCTGC 1 cut(s) 368
BfuI GTATCC 1 cut(s) 783
BlpI GCTNAGC 1 cut(s) 1032
Bme1390I CCNGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 2 cut(s) 1635, 1662
BmgT120I GGNCC 4 cut(s) 21, 278, 287, 1398
BmiI GGNNCC 3 cut(s) 59, 1092, 1185
BmrFI CCNGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
BmrI ACTGGG 2 cut(s) 83, 799
BmsI GCATC 4 cut(s) 97, 126, 1229, 1483
BmuI ACTGGG 2 cut(s) 83, 799
BpiI GAAGAC 3 cut(s) 643, 1557, 1795
BpmI CTGGAG 3 cut(s) 234, 1397, 1535
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 1032
BpuEI CTTGAG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 1584
BsaHI GRCGYC 1 cut(s) 1100
BsaJI CCNNGG 7 cut(s) 24, 187, 844, 1201, 1332, 1663, 1707
BsaWI WCCGGW 1 cut(s) 1684
Bsc4I CCNNNNNNNGG 8 cut(s) 44, 113, 189, 619, 737, 1157, 1207, 1691
Bse1I ACTGG 5 cut(s) 78, 268, 794, 829, 1056
Bse3DI GCAATG 2 cut(s) 369, 501
BseAI TCCGGA 1 cut(s) 1684
BseBI CCWGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
BseCI ATCGAT 1 cut(s) 1584
BseDI CCNNGG 7 cut(s) 24, 187, 844, 1201, 1332, 1663, 1707
BseGI GGATG 1 cut(s) 1606
BseLI CCNNNNNNNGG 8 cut(s) 44, 113, 189, 619, 737, 1157, 1207, 1691
BseMI GCAATG 2 cut(s) 369, 501
BseMII CTCAG 2 cut(s) 1046, 1846
BseNI ACTGG 5 cut(s) 78, 268, 794, 829, 1056
BseRI GAGGAG 2 cut(s) 468, 1853
BseYI CCCAGC 1 cut(s) 752
Bsh1236I CGCG 1 cut(s) 1396
BshFI GGCC 7 cut(s) 23, 288, 457, 711, 1400, 1706, 1905
BshNI GGYRCC 1 cut(s) 1090
BshVI ATCGAT 1 cut(s) 1584
BsiHKCI CYCGRG 2 cut(s) 1635, 1662
BsiSI CCGG 1 cut(s) 1685
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 8 cut(s) 44, 113, 189, 619, 737, 1157, 1207, 1691
BsmAI GTCTC 4 cut(s) 64, 1205, 1288, 1835
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 7 cut(s) 23, 288, 457, 711, 1400, 1706, 1905
BsoBI CYCGRG 2 cut(s) 1635, 1662
Bsp13I TCCGGA 1 cut(s) 1684
Bsp143I GATC 2 cut(s) 160, 1581
Bsp1720I GCTNAGC 1 cut(s) 1032
Bsp19I CCATGG 1 cut(s) 1332
BspACI CCGC 5 cut(s) 413, 492, 840, 1163, 1396
BspANI GGCC 7 cut(s) 23, 288, 457, 711, 1400, 1706, 1905
BspCNI CTCAG 2 cut(s) 1045, 1845
BspDI ATCGAT 1 cut(s) 1584
BspEI TCCGGA 1 cut(s) 1684
BspFNI CGCG 1 cut(s) 1396
BspLI GGNNCC 3 cut(s) 59, 1092, 1185
BspMAI CTGCAG 3 cut(s) 69, 721, 991
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 1090
BsrDI GCAATG 2 cut(s) 369, 501
BsrI ACTGG 5 cut(s) 78, 268, 794, 829, 1056
BssECI CCNNGG 7 cut(s) 24, 187, 844, 1201, 1332, 1663, 1707
BssMI GATC 2 cut(s) 160, 1581
BssNI GRCGYC 1 cut(s) 1100
BssT1I CCWWGG 3 cut(s) 187, 1332, 1707
Bst2UI CCWGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
Bst4CI ACNGT 7 cut(s) 174, 448, 529, 568, 1326, 1435, 1548
Bst6I CTCTTC 3 cut(s) 1258, 1266, 1440
BstACI GRCGYC 1 cut(s) 1100
BstAPI GCANNNNNTGC 3 cut(s) 380, 383, 731
BstC8I GCNNGC 4 cut(s) 626, 727, 1074, 1398
BstDEI CTNAG 3 cut(s) 452, 1032, 1832
BstDSI CCRYGG 1 cut(s) 1332
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 1 cut(s) 1606
BstFNI CGCG 1 cut(s) 1396
BstH2I RGCGCY 1 cut(s) 969
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 2 cut(s) 163, 1584
BstMAI GTCTC 4 cut(s) 64, 1205, 1288, 1835
BstMBI GATC 2 cut(s) 160, 1581
BstNI CCWGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
BstNSI RCATGY 3 cut(s) 8, 628, 729
BstSCI CCNGG 6 cut(s) 23, 240, 775, 844, 1012, 1200
BstSFI CTRYAG 3 cut(s) 65, 717, 987
BstUI CGCG 1 cut(s) 1396
BstV2I GAAGAC 3 cut(s) 643, 1557, 1795
Bsu15I ATCGAT 1 cut(s) 1584
BsuI GTATCC 1 cut(s) 783
BsuRI GGCC 7 cut(s) 23, 288, 457, 711, 1400, 1706, 1905
BsuTUI ATCGAT 1 cut(s) 1584
BtgI CCRYGG 1 cut(s) 1332
BtsCI GGATG 1 cut(s) 1606
BtsIMutI CAGTG 2 cut(s) 573, 1049
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 4 cut(s) 626, 727, 1074, 1398
CaiI CAGNNNCTG 6 cut(s) 73, 383, 422, 572, 596, 1268
CfoI GCGC 1 cut(s) 968
Cfr13I GGNCC 4 cut(s) 21, 278, 287, 1398
ClaI ATCGAT 1 cut(s) 1584
CseI GACGC 1 cut(s) 559
Csp6I GTAC 6 cut(s) 2, 33, 104, 261, 787, 1632
CviQI GTAC 6 cut(s) 2, 33, 104, 261, 787, 1632
DdeI CTNAG 3 cut(s) 452, 1032, 1832
DpnI GATC 2 cut(s) 162, 1583
DpnII GATC 2 cut(s) 160, 1581
EaeI YGGCCR 2 cut(s) 1704, 1903
Eam1104I CTCTTC 3 cut(s) 1258, 1266, 1440
EarI CTCTTC 3 cut(s) 1258, 1266, 1440
EciI GGCGGA 1 cut(s) 829
Eco130I CCWWGG 3 cut(s) 187, 1332, 1707
Eco32I GATATC 1 cut(s) 1732
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 7 cut(s) 63, 303, 384, 1062, 1236, 1290, 1383
Eco88I CYCGRG 2 cut(s) 1635, 1662
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoO109I RGGNCCY 2 cut(s) 278, 287
EcoRI GAATTC 2 cut(s) 780, 1234
EcoRII CCWGG 6 cut(s) 23, 240, 775, 844, 1012, 1200
EcoRV GATATC 1 cut(s) 1732
EcoT14I CCWWGG 3 cut(s) 187, 1332, 1707
EcoT22I ATGCAT 2 cut(s) 141, 1467
ErhI CCWWGG 3 cut(s) 187, 1332, 1707
FalI AAGNNNNNCTT 6 cut(s) 1356, 1388, 1549, 1581, 1869, 1901
FaqI GGGAC 1 cut(s) 562
FauI CCCGC 1 cut(s) 1389
FauNDI CATATG 2 cut(s) 1045, 1531
FblI GTMKAC 1 cut(s) 1328
FokI GGATG 1 cut(s) 1613
FspBI CTAG 4 cut(s) 209, 257, 291, 1590
GlaI GCGC 1 cut(s) 967
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 3 cut(s) 234, 1397, 1535
HaeII RGCGCY 1 cut(s) 969
HaeIII GGCC 7 cut(s) 23, 288, 457, 711, 1400, 1706, 1905
HapII CCGG 1 cut(s) 1685
HgaI GACGC 1 cut(s) 559
HhaI GCGC 1 cut(s) 968
Hin1I GRCGYC 1 cut(s) 1100
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 940
HinfI GANTC 7 cut(s) 216, 849, 1349, 1381, 1586, 1814, 1882
HpaI GTTAAC 1 cut(s) 861
HpaII CCGG 1 cut(s) 1685
HphI GGTGA 1 cut(s) 1547
Hpy166II GTNNAC 8 cut(s) 146, 525, 577, 675, 861, 926, 1198, 1329
Hpy188I TCNGA 6 cut(s) 1225, 1348, 1354, 1431, 1479, 1570
Hpy188III TCNNGA 9 cut(s) 281, 402, 1376, 1514, 1598, 1637, 1685, 1822, 1886
Hpy8I GTNNAC 8 cut(s) 146, 525, 577, 675, 861, 926, 1198, 1329
HpyAV CCTTC 5 cut(s) 38, 278, 722, 1121, 1414
HpyCH4III ACNGT 7 cut(s) 174, 448, 529, 568, 1326, 1435, 1548
HpyCH4IV ACGT 2 cut(s) 1100, 1574
HpyF3I CTNAG 3 cut(s) 452, 1032, 1832
HpySE526I ACGT 2 cut(s) 1100, 1574
Hsp92I GRCGYC 1 cut(s) 1100
HspAI GCGC 1 cut(s) 966
Kpn2I TCCGGA 1 cut(s) 1684
KspAI GTTAAC 1 cut(s) 861
Kzo9I GATC 2 cut(s) 160, 1581
LmnI GCTCC 3 cut(s) 63, 749, 1711
LweI GCATC 4 cut(s) 97, 126, 1229, 1483
MaeI CTAG 4 cut(s) 209, 257, 291, 1590
MaeII ACGT 2 cut(s) 1100, 1574
MaeIII GTNAC 3 cut(s) 109, 1247, 1435
MalI GATC 2 cut(s) 162, 1583
MboI GATC 2 cut(s) 160, 1581
MlsI TGGCCA 2 cut(s) 1706, 1905
MluNI TGGCCA 2 cut(s) 1706, 1905
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 2 cut(s) 62, 1147
Mox20I TGGCCA 2 cut(s) 1706, 1905
Mph1103I ATGCAT 2 cut(s) 141, 1467
MroI TCCGGA 1 cut(s) 1684
MroXI GAANNNNTTC 3 cut(s) 397, 1371, 1509
MscI TGGCCA 2 cut(s) 1706, 1905
MslI CAYNNNNRTG 1 cut(s) 1305
Msp20I TGGCCA 2 cut(s) 1706, 1905
MspA1I CMGCKG 3 cut(s) 593, 986, 1265
MspI CCGG 1 cut(s) 1685
MspR9I CCNGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
MvaI CCWGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
MvnI CGCG 1 cut(s) 1396
NcoI CCATGG 1 cut(s) 1332
NdeI CATATG 2 cut(s) 1045, 1531
NdeII GATC 2 cut(s) 160, 1581
NlaIV GGNNCC 3 cut(s) 59, 1092, 1185
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 2 cut(s) 141, 1467
NspI RCATGY 3 cut(s) 8, 628, 729
PaeI GCATGC 2 cut(s) 628, 729
PaeR7I CTCGAG 1 cut(s) 1635
PaqCI CACCTGC 1 cut(s) 368
PciI ACATGT 1 cut(s) 4
PdmI GAANNNNTTC 3 cut(s) 397, 1371, 1509
PfeI GAWTC 6 cut(s) 849, 1349, 1381, 1586, 1814, 1882
PfoI TCCNGGA 2 cut(s) 775, 1012
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 278
PscI ACATGT 1 cut(s) 4
PshBI ATTAAT 3 cut(s) 332, 999, 1700
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 6 cut(s) 23, 240, 775, 844, 1012, 1200
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 6 cut(s) 23, 240, 775, 844, 1012, 1200
PspN4I GGNNCC 3 cut(s) 59, 1092, 1185
PspPI GGNCC 4 cut(s) 21, 278, 287, 1398
PspPPI RGGWCCY 1 cut(s) 278
PsrI GAACNNNNNNTAC 2 cut(s) 253, 285
PstI CTGCAG 3 cut(s) 69, 721, 991
PstNI CAGNNNCTG 6 cut(s) 73, 383, 422, 572, 596, 1268
PvuII CAGCTG 3 cut(s) 593, 986, 1265
RsaI GTAC 6 cut(s) 3, 34, 105, 262, 788, 1633
RsaNI GTAC 6 cut(s) 2, 33, 104, 261, 787, 1632
RseI CAYNNNNRTG 1 cut(s) 1305
Sau3AI GATC 2 cut(s) 160, 1581
Sau96I GGNCC 4 cut(s) 21, 278, 287, 1398
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 6 cut(s) 25, 242, 777, 846, 1014, 1202
SfaNI GCATC 4 cut(s) 97, 126, 1229, 1483
SfcI CTRYAG 3 cut(s) 65, 717, 987
Sfr274I CTCGAG 1 cut(s) 1635
SinI GGWCC 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 1635
SmiMI CAYNNNNRTG 1 cut(s) 1305
SmlI CTYRAG 2 cut(s) 767, 1635
SmoI CTYRAG 2 cut(s) 767, 1635
SphI GCATGC 2 cut(s) 628, 729
SsiI CCGC 5 cut(s) 413, 492, 840, 1163, 1396
SspI AATATT 3 cut(s) 156, 1143, 1524
SspMI CTAG 4 cut(s) 209, 257, 291, 1590
StyD4I CCNGG 6 cut(s) 23, 240, 775, 844, 1012, 1200
StyI CCWWGG 3 cut(s) 187, 1332, 1707
TaaI ACNGT 7 cut(s) 174, 448, 529, 568, 1326, 1435, 1548
TaiI ACGT 2 cut(s) 1103, 1577
TaqI TCGA 4 cut(s) 91, 463, 1584, 1636
TatI WGTACW 2 cut(s) 786, 1631
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 6 cut(s) 849, 1349, 1381, 1586, 1814, 1882
TscAI CASTG 2 cut(s) 573, 1056
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 6 cut(s) 1296, 1518, 1617, 1640, 1796, 1853
TspGWI ACGGA 2 cut(s) 50, 1246
TspRI CASTG 2 cut(s) 573, 1056
VpaK11BI GGWCC 1 cut(s) 278
VspI ATTAAT 3 cut(s) 332, 999, 1700
XagI CCTNNNNNAGG 1 cut(s) 735
XapI RAATTY 3 cut(s) 393, 780, 1234
XceI RCATGY 3 cut(s) 8, 628, 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 1714
XhoI CTCGAG 1 cut(s) 1635
XmiI GTMKAC 1 cut(s) 1328
XmnI GAANNNNTTC 3 cut(s) 397, 1371, 1509
XspI CTAG 4 cut(s) 209, 257, 291, 1590
ZraI GACGTC 1 cut(s) 1101
Zsp2I ATGCAT 2 cut(s) 141, 1467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.