Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000725.1

Orthogroup ID

OG0005430

Physical Location & Seq

Genomic Coordinates Reverse (-)

4221 .. 6036

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000725.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggccgccgtcgtcggaggaatccacgaatcccaaggttccgagaacagccgcgaaatcgacgacctcgctcgcttcgccgtccaagagcacaacaccaaggagaatgctgtgcttgagtttgtgagggttgtgaagaccaagcagcaagtgcctcatgatcctcaagttcaagatgcagccaaccatgctgtgaagagccttcagcaaaagtccaattcattgttccctaaagagcttcaagagattgtccattataaggcagaggtgatagaagatcatgccaagttcaacatgcttcttaagctgaagaggggagacgaagaagagaaatataaagttgaagtgcacaataacaatgaaggtgcctacaatctgaatcagatggaggcacagcactcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

134

Amino Acids

15.27

Weight (kDa)

5.73

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40880 AT5G12140
fragaria_vesca	FvH4_7g04180
malus_domestica	MD02G1274700.v1.1 MD07G1042400.v1.1
prunus_persica	Prupe.2G044800_v2.0.a1 Prupe.2G047300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0328521
rosa_laevigata	RLG00000016813
rosa_multiflora	Rmu_sc0000725.1_g000003 Rmu_sc0001563.1_g000009 Rmu_sc0006331.1_g000001 Rmu_sc0016254.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321540
rosa_rugosa	Rorug01G0074300 Rorug01G0074800 Rorug05G0191000
rosa_samantha	Rh1AG092600 Rh1AG092800 Rh1AG093400 Rh1BG072900 Rh1BG074600 Rh1CG089700 Rh1CG090500 Rh1DG095800 Rh1DG096300 Rh1DG096500
rosa_wichuraiana	Rw1G007240 Rw1G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	6, 52
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	188, 329
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	173, 242, 292, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	2 cut(s)	238, 307
AluI	AGCT	2 cut(s)	238, 307
Alw21I	GWGCWC	2 cut(s)	93, 351
Alw26I	GTCTC	1 cut(s)	312
Alw44I	GTGCAC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	145, 179
AsuHPI	GGTGA	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	2 cut(s)	93, 351
BbvI	GCAGC	2 cut(s)	157, 191
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	4 cut(s)	6, 52, 146, 180
BlsI	GCNGC	4 cut(s)	7, 53, 147, 181
BmiI	GGNNCC	2 cut(s)	40, 367
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	137, 150
BsaJI	CCNNGG	2 cut(s)	34, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	34, 99
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	157, 191
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	2 cut(s)	93, 351
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	312
BsmBI	CGTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	93, 351
Bsp143I	GATC	2 cut(s)	160, 277
BspACI	CCGC	2 cut(s)	6, 52
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	40, 367
BspPI	GGATC	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	365
BspTI	CTTAAG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	34, 99
BssMI	GATC	2 cut(s)	160, 277
BssT1I	CCWWGG	2 cut(s)	34, 99
Bst6I	CTCTTC	3 cut(s)	191, 305, 321
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	163, 280
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	2 cut(s)	160, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 151, 188, 304
BstNSI	RCATGY	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	157, 191
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	73
CciI	TCATGA	1 cut(s)	157
CviAII	CATG	4 cut(s)	158, 188, 281, 295
CviJI	RGCY	6 cut(s)	5, 51, 182, 201, 238, 307
CviKI_1	RGCY	6 cut(s)	5, 51, 182, 201, 238, 307
DpnI	GATC	2 cut(s)	162, 279
DpnII	GATC	2 cut(s)	160, 277
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	191, 305, 321
EarI	CTCTTC	3 cut(s)	191, 305, 321
Eco130I	CCWWGG	2 cut(s)	34, 99
Eco57I	CTGAAG	2 cut(s)	188, 329
EcoT14I	CCWWGG	2 cut(s)	34, 99
ErhI	CCWWGG	2 cut(s)	34, 99
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	4 cut(s)	161, 191, 284, 298
FaiI	YATR	7 cut(s)	159, 189, 258, 282, 296, 336, 403
FatI	CATG	4 cut(s)	157, 187, 280, 294
Fnu4HI	GCNGC	4 cut(s)	6, 52, 146, 180
Fsp4HI	GCNGC	4 cut(s)	6, 52, 146, 180
GluI	GCNGC	4 cut(s)	6, 52, 146, 180
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	161, 191, 284, 298
HinfI	GANTC	3 cut(s)	21, 29, 379
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	4 cut(s)	17, 43, 378, 384
Hpy188III	TCNNGA	3 cut(s)	158, 173, 242
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	3 cut(s)	14, 17, 65
HpyAV	CCTTC	2 cut(s)	212, 356
HpyCH4V	TGCA	2 cut(s)	179, 349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 151, 188, 304
Hsp92II	CATG	4 cut(s)	161, 191, 284, 298
Kzo9I	GATC	2 cut(s)	160, 277
LguI	GCTCTTC	1 cut(s)	191
Lsp1109I	GCAGC	2 cut(s)	157, 191
LweI	GCATC	1 cut(s)	166
MalI	GATC	2 cut(s)	162, 279
MboI	GATC	2 cut(s)	160, 277
MboII	GAAGA	6 cut(s)	148, 208, 287, 322, 335, 338
MhlI	GDGCHC	2 cut(s)	93, 351
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	8 cut(s)	11, 77, 120, 165, 174, 259, 306, 382
MseI	TTAA	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	77, 151, 188, 304
NdeII	GATC	2 cut(s)	160, 277
NlaIII	CATG	4 cut(s)	161, 191, 284, 298
NlaIV	GGNNCC	2 cut(s)	40, 367
NspI	RCATGY	1 cut(s)	298
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	21, 29, 379
PkrI	GCNGC	4 cut(s)	7, 53, 147, 181
PsiI	TTATAA	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	40, 367
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	4 cut(s)	6, 52, 146, 180
Sau3AI	GATC	2 cut(s)	160, 277
SduI	GDGCHC	2 cut(s)	93, 351
SetI	ASST	6 cut(s)	40, 69, 240, 270, 309, 367
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	3 cut(s)	116, 165, 302
SmoI	CTYRAG	3 cut(s)	116, 165, 302
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	6, 52
StyI	CCWWGG	2 cut(s)	34, 99
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	217
TauI	GCSGC	2 cut(s)	8, 54
TfiI	GAWTC	3 cut(s)	21, 29, 379
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	2 cut(s)	145, 179
TspDTI	ATGAA	2 cut(s)	210, 375
Vha464I	CTTAAG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	347
XceI	RCATGY	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.