Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006331.1

Orthogroup ID

OG0005430

Physical Location & Seq

Genomic Coordinates Forward (+)

2887 .. 3353

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggccaccctcggcggaattcgcgactcccctgccggctccgagaacagcctcgagaccgaatccctcgcccgcttcgccgtcgacgagcataacaagaaggagaatgctctgctggagtttgttcgagtggtgaaggcgaaggaacaggtggtcgccggcactctgcaccatctggttgtggaggccatcgacggcggcaagaagaagctttatgaagccaaggtctgggtcaagccttggttgggatttaaagaagttcaggaattcaagcacgctgaggatctcgaagctgcatctgaaacgccgtcgtttactgcttccgatttgggcgttaagcaaggtgattcactggctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

120

Amino Acids

13.09

Weight (kDa)

5.23

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40880 AT5G12140
fragaria_vesca	FvH4_7g04180
malus_domestica	MD02G1274700.v1.1 MD07G1042400.v1.1
prunus_persica	Prupe.2G044800_v2.0.a1 Prupe.2G047300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0328521
rosa_laevigata	RLG00000016813
rosa_multiflora	Rmu_sc0000725.1_g000003 Rmu_sc0001563.1_g000009 Rmu_sc0006331.1_g000001 Rmu_sc0016254.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321540
rosa_rugosa	Rorug01G0074300 Rorug01G0074800 Rorug05G0191000
rosa_samantha	Rh1AG092600 Rh1AG092800 Rh1AG093400 Rh1BG072900 Rh1BG074600 Rh1CG089700 Rh1CG090500 Rh1DG095800 Rh1DG096300 Rh1DG096500
rosa_wichuraiana	Rw1G007240 Rw1G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	15, 73, 198
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	18, 266
AfiI	CCNNNNNNNGG	2 cut(s)	228, 245
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	2 cut(s)	211, 293
AluI	AGCT	2 cut(s)	211, 293
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	3, 186
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	18, 266
AsuHPI	GGTGA	2 cut(s)	145, 356
AvaI	CYCGRG	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	180, 197
BceAI	ACGGC	3 cut(s)	65, 211, 292
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BcoDI	GTCTC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	199, 294
BlsI	GCNGC	2 cut(s)	200, 295
BmeT110I	CYCGRG	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	10, 222, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 245
Bse118I	RCCGGY	2 cut(s)	35, 158
Bse1I	ACTGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	10, 222, 239
BseLI	CCNNNNNNNGG	2 cut(s)	228, 245
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	5, 188
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	36, 159
BslI	CCNNNNNNNGG	2 cut(s)	228, 245
BsmAI	GTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 188
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	283
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	3 cut(s)	15, 73, 198
BspANI	GGCC	2 cut(s)	5, 188
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	50
BsrFI	RCCGGY	2 cut(s)	35, 158
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	2 cut(s)	35, 158
BssECI	CCNNGG	3 cut(s)	10, 222, 239
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	2 cut(s)	222, 239
BstC8I	GCNNGC	4 cut(s)	37, 73, 160, 276
BstDEI	CTNAG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 77
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	5, 188
BtsIMutI	CAGTG	1 cut(s)	350
BtuMI	TCGCGA	1 cut(s)	24
Cac8I	GCNNGC	4 cut(s)	37, 73, 160, 276
Cfr10I	RCCGGY	2 cut(s)	35, 158
CviJI	RGCY	9 cut(s)	5, 39, 51, 188, 211, 221, 238, 293, 356
CviKI_1	RGCY	9 cut(s)	5, 39, 51, 188, 211, 221, 238, 293, 356
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DraI	TTTAAA	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	222, 239
Eco31I	GGTCTC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	53
EcoRI	GAATTC	2 cut(s)	18, 266
EcoT14I	CCWWGG	2 cut(s)	222, 239
ErhI	CCWWGG	2 cut(s)	222, 239
FaiI	YATR	2 cut(s)	93, 216
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	199, 294
Fsp4HI	GCNGC	2 cut(s)	199, 294
GluI	GCNGC	2 cut(s)	199, 294
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	5, 188
HapII	CCGG	2 cut(s)	36, 159
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	26, 62, 347
HpaII	CCGG	2 cut(s)	36, 159
HphI	GGTGA	2 cut(s)	145, 356
Hpy166II	GTNNAC	2 cut(s)	85, 315
Hpy188I	TCNGA	3 cut(s)	43, 301, 325
Hpy188III	TCNNGA	4 cut(s)	23, 55, 263, 287
Hpy8I	GTNNAC	2 cut(s)	85, 315
Hpy99I	CGWCG	4 cut(s)	86, 89, 197, 313
HpyAV	CCTTC	3 cut(s)	94, 130, 136
HpyCH4V	TGCA	2 cut(s)	169, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 77
HpyF3I	CTNAG	1 cut(s)	279
KroI	GCCGGC	2 cut(s)	35, 158
KroNI	GCCGGC	2 cut(s)	37, 160
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	45, 49, 101, 134, 161, 172, 214, 248, 338
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	305
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	18, 266
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	20, 62, 77, 178, 274
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	35, 158
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	252, 336, 361
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	36, 159
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	21, 77
NaeI	GCCGGC	2 cut(s)	37, 160
NdeII	GATC	1 cut(s)	283
NgoMIV	GCCGGC	2 cut(s)	35, 158
NlaIV	GGNNCC	1 cut(s)	40
NruI	TCGCGA	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	2 cut(s)	37, 160
PfeI	GAWTC	2 cut(s)	62, 347
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	200, 295
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	283
RruI	TCGCGA	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	252, 336, 361
SatI	GCNGC	2 cut(s)	199, 294
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	20
SetI	ASST	5 cut(s)	153, 213, 228, 295, 346
SfaNI	GCATC	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	53
SgrDI	CGTCGACG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	18, 266
SsiI	CCGC	3 cut(s)	15, 73, 198
StyI	CCWWGG	2 cut(s)	222, 239
TaqI	TCGA	5 cut(s)	54, 84, 127, 192, 288
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	18, 266
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	62, 347
Tru1I	TTAA	3 cut(s)	252, 336, 361
Tru9I	TTAA	3 cut(s)	252, 336, 361
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	18, 266
XhoI	CTCGAG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.