Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016254.1

Orthogroup ID

OG0005430

Physical Location & Seq

Genomic Coordinates Reverse (-)

4854 .. 5220

Gene Structure 367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016254.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggccgccgtcgtcggaggaatccacgaatcccaaggttccgagaacagcctcgaaatcgacgacctcgctcgcttcgccgtccaagagcacaacaccaaggagaatgctgtgcttgagtttgtgagggttgtgaagaccaagcaacaagtggtttcgggcactgtgtactatctcaccattgaggccaccgacggtggtcagaagaagctttttgaggccaaggtctgggttaagccttggctcaacttcaaggaagtccaggaattcaaacccgttgctgacgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

5.33

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40880 AT5G12140
fragaria_vesca	FvH4_7g04180
malus_domestica	MD02G1274700.v1.1 MD07G1042400.v1.1
prunus_persica	Prupe.2G044800_v2.0.a1 Prupe.2G047300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0328521
rosa_laevigata	RLG00000016813
rosa_multiflora	Rmu_sc0000725.1_g000003 Rmu_sc0001563.1_g000009 Rmu_sc0006331.1_g000001 Rmu_sc0016254.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321540
rosa_rugosa	Rorug01G0074300 Rorug01G0074800 Rorug05G0191000
rosa_samantha	Rh1AG092600 Rh1AG092800 Rh1AG093400 Rh1BG072900 Rh1BG074600 Rh1CG089700 Rh1CG090500 Rh1DG095800 Rh1DG096300 Rh1DG096500
rosa_wichuraiana	Rw1G007240 Rw1G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	253, 271
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	93
AoxI	GGCC	3 cut(s)	3, 186, 219
ApoI	RAATTY	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	289
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	263
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	34, 99, 222, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	4 cut(s)	34, 99, 222, 239
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	5, 188, 221
BsiHKAI	GWGCWC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	5, 188, 221
Bsp1286I	GDGCHC	2 cut(s)	93, 164
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	3 cut(s)	5, 188, 221
BspLI	GGNNCC	1 cut(s)	40
BssECI	CCNNGG	4 cut(s)	34, 99, 222, 239
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	4 cut(s)	34, 99, 222, 239
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	166, 197
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	263
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	5, 188, 221
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	169
CviJI	RGCY	7 cut(s)	5, 51, 188, 211, 221, 238, 244
CviKI_1	RGCY	7 cut(s)	5, 51, 188, 211, 221, 238, 244
CviQI	GTAC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	4 cut(s)	34, 99, 222, 239
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	4 cut(s)	34, 99, 222, 239
ErhI	CCWWGG	4 cut(s)	34, 99, 222, 239
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	289
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	5, 188, 221
Hin1I	GRCGYC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	21, 29
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	17, 43, 204
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	4 cut(s)	14, 17, 65, 197
HpyCH4III	ACNGT	2 cut(s)	166, 197
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	285
LpnPI	CCDG	3 cut(s)	214, 248, 275
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	1 cut(s)	285
MboII	GAAGA	2 cut(s)	148, 217
MhlI	GDGCHC	2 cut(s)	93, 164
MluCI	AATT	1 cut(s)	266
MnlI	CCTC	6 cut(s)	11, 62, 77, 120, 178, 211
MseI	TTAA	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	21, 29
PflMI	CCANNNNNTGG	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	93, 164
SetI	ASST	5 cut(s)	40, 69, 213, 228, 288
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	4 cut(s)	34, 99, 222, 239
TaaI	ACNGT	2 cut(s)	166, 197
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	54, 60
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	21, 29
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	169
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	289
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.