Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005430

Physical Location & Seq

Genomic Coordinates Forward (+)

11536671 .. 11540451

Gene Structure 3781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG074600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCCGCCGTCGTCGGAGGAATCCATGAATCCCAAGGTTCCGAGAACAGCCTCGAAATCGACGACCTCGCTCGCTTCGCCGTCCAAGAGCACAACACCAAGGAGAATGCTGTGCTTGAGTTTGTGAGGGTTGTGAAGACCAAGCAACAAGTGGTTTCTGGCACTGTGTACTATCTCACTATTGAGACCACCGATGGGGGTCAGAAGAAGCTTTTTGAGGCCAAGGTCTGGGTTAAGCCTTGGCTCAACTTCAAGGAAGTTCAGGAATTCAAACCCGTTGCTGACGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

5.33

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	6 - 93	2e-19	Cystatin domain
SQAPI	PF16845	19 - 93	1.4e-21	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40880 AT5G12140
fragaria_vesca	FvH4_7g04180
malus_domestica	MD02G1274700.v1.1 MD07G1042400.v1.1
prunus_persica	Prupe.2G044800_v2.0.a1 Prupe.2G047300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0328521
rosa_laevigata	RLG00000016813
rosa_multiflora	Rmu_sc0000725.1_g000003 Rmu_sc0001563.1_g000009 Rmu_sc0006331.1_g000001 Rmu_sc0016254.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321540
rosa_rugosa	Rorug01G0074300 Rorug01G0074800 Rorug05G0191000
rosa_samantha	Rh1AG092600 Rh1AG092800 Rh1AG093400 Rh1BG072900 Rh1BG074600 Rh1CG089700 Rh1CG090500 Rh1DG095800 Rh1DG096300 Rh1DG096500
rosa_wichuraiana	Rw1G007240 Rw1G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	195, 228
AgsI	TTSAA	2 cut(s)	253, 271
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	179
AoxI	GGCC	2 cut(s)	3, 219
ApoI	RAATTY	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	289
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	4 cut(s)	34, 99, 222, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 228
BseDI	CCNNGG	4 cut(s)	34, 99, 222, 239
BseLI	CCNNNNNNNGG	2 cut(s)	195, 228
BshFI	GGCC	2 cut(s)	5, 221
BsiHKAI	GWGCWC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	195, 228
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 221
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	5, 221
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	34, 99, 222, 239
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	4 cut(s)	34, 99, 222, 239
Bst4CI	ACNGT	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	5, 221
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	6 cut(s)	5, 51, 211, 221, 238, 244
CviKI_1	RGCY	6 cut(s)	5, 51, 211, 221, 238, 244
CviQI	GTAC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	4 cut(s)	34, 99, 222, 239
Eco31I	GGTCTC	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	266
EcoT14I	CCWWGG	4 cut(s)	34, 99, 222, 239
ErhI	CCWWGG	4 cut(s)	34, 99, 222, 239
FaeI	CATG	1 cut(s)	29
FaiI	YATR	1 cut(s)	27
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	289
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	5, 221
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	21, 29
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	17, 43, 204
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	3 cut(s)	14, 17, 65
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	29
LpnPI	CCDG	3 cut(s)	144, 214, 248
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	1 cut(s)	285
MboII	GAAGA	2 cut(s)	148, 217
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	266
MnlI	CCTC	5 cut(s)	11, 62, 77, 120, 211
MseI	TTAA	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	21, 29
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	5 cut(s)	40, 69, 213, 228, 288
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	289
StyI	CCWWGG	4 cut(s)	34, 99, 222, 239
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	54, 60
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	21, 29
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	289
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.