Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

18592247 .. 18594458

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0191000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCAGCCTCAGTTATGGCCTCAGTGAGCTTGAAACCAGCTCCTTTCAGTTTTGAGAAGTCAGCAGTGAGAGGCCTTCCCTCTCTTGCTAGGACCTCTGCCTCATTCAAGGTCCAAGCCAGTGGTGGCAAGAAGATCAAGACTGATACACCCTATGGAACTGGTGGTGGCATGAACTTGAGGGAAGGGACAGATGCATCAGGAAGGAAGCCTAAAGGAAAGGGTGTCTACCAGTTTGTAGACAAATATGGTGCTAATGTTGATGGATACAGTCCCATCTACAGCCCTGAGGAATGGTCCCCAAGTGGTGATAGATACGCTGGTGCCACTGGCTTGGCTATCTGGGCTGTGACCCTTTTCGGCATTCTTGTCGGGGGTGCTCTTCTTGTCTACAACACCAGTGCATTGTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

138

Amino Acids

14.32

Weight (kDa)

9.62

Isoelectric Point (pI)

17.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbR	PF04725	41 - 137	2.4e-48	Photosystem II 10 kDa polypeptide PsbR

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	3 cut(s)	228, 240, 390
AgsI	TTSAA	2 cut(s)	34, 109
AluBI	AGCT	2 cut(s)	30, 41
AluI	AGCT	2 cut(s)	30, 41
Alw21I	GWGCWC	1 cut(s)	382
AoxI	GGCC	2 cut(s)	18, 73
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	3 cut(s)	93, 112, 297
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	3 cut(s)	93, 112, 297
AxyI	CCTNAGG	1 cut(s)	288
BaeI	ACNNNNGTAYC	2 cut(s)	307, 340
BanI	GGYRCC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	257, 284
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciVI	GTATCC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	3 cut(s)	93, 112, 297
BmgT120I	GGNCC	3 cut(s)	93, 112, 297
BmiI	GGNNCC	2 cut(s)	299, 325
BmsI	GCATC	2 cut(s)	184, 206
BpuEI	CTTGAG	1 cut(s)	199
Bse1I	ACTGG	5 cut(s)	120, 166, 232, 334, 399
Bse21I	CCTNAGG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	24, 36, 279
BseNI	ACTGG	5 cut(s)	120, 166, 232, 334, 399
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	20, 75
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	3 cut(s)	202, 258, 283
BsmFI	GGGAC	3 cut(s)	202, 258, 283
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	20, 75
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	20, 75
BspCNI	CTCAG	3 cut(s)	23, 35, 280
BspLI	GGNNCC	2 cut(s)	299, 325
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	323
BsrI	ACTGG	5 cut(s)	120, 166, 232, 334, 399
BssMI	GATC	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	272, 414
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	10, 22, 288
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	17
BstXI	CCANNNNNNTGG	2 cut(s)	122, 334
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	20, 75
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	5 cut(s)	30, 72, 127, 327, 406
Cfr13I	GGNCC	3 cut(s)	93, 112, 297
CviAII	CATG	1 cut(s)	172
DdeI	CTNAG	3 cut(s)	10, 22, 288
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	3 cut(s)	93, 112, 297
Eco81I	CCTNAGG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	17, 156, 173, 249
FaqI	GGGAC	3 cut(s)	202, 258, 283
FatI	CATG	1 cut(s)	171
FblI	GTMKAC	3 cut(s)	228, 240, 390
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	20, 75
Hin1II	CATG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	3 cut(s)	229, 241, 391
Hpy188III	TCNNGA	2 cut(s)	139, 201
Hpy8I	GTNNAC	3 cut(s)	229, 241, 391
HpyAV	CCTTC	3 cut(s)	86, 179, 198
HpyCH4III	ACNGT	2 cut(s)	272, 414
HpyCH4V	TGCA	2 cut(s)	197, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	3 cut(s)	10, 22, 288
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	135
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	184, 206
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	349, 408
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	2 cut(s)	145, 374
MhlI	GDGCHC	1 cut(s)	382
MnlI	CCTC	8 cut(s)	19, 31, 65, 91, 106, 112, 174, 283
Mph1103I	ATGCAT	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	299, 325
NmuCI	GTSAC	2 cut(s)	349, 408
NsiI	ATGCAT	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	299, 325
PspPI	GGNCC	3 cut(s)	93, 112, 297
PspPPI	RGGWCCY	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	387
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	93, 112, 297
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	4 cut(s)	32, 43, 98, 114
SfaNI	GCATC	2 cut(s)	184, 206
SfcI	CTRYAG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	93, 112, 297
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	272, 414
TscAI	CASTG	5 cut(s)	30, 72, 127, 334, 406
TseFI	GTSAC	2 cut(s)	349, 408
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	349, 408
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	5 cut(s)	30, 72, 127, 334, 406
VpaK11BI	GGWCC	3 cut(s)	93, 112, 297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmiI	GTMKAC	3 cut(s)	228, 240, 390
XspI	CTAG	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.