Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Forward (+)

35661479 .. 35663380

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG281900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGGAGGGGACGCGGAGCCGCCGCCGTGGCTGCCAGAGCAAATGGACCGCCGGCCGAGCCCAACGGATCCAGACCCATTAAAGAGGTGAAGTACCGGGGCGTCAGGAAAAGGCCGTGGGGAAAATACGCGGCGGAGATCCGAGACCCGTATAAGAAGAGCCGGGTCTGGCTCGGGACCTTCGAGTCCGCCGAGGACGCGGCTCGGGCCTACGACGCCGCCGCCCGGGTCCTCCGCGGACCCAAAGCCAAGACCAATTTCCCCACCTACTCCAATCATCTCTGTTACAACAACCCCGCCGATCCCAACCTCGACAGCAAGCTGTTCGGGTCGGGTTACGGGTTCCACGACGACAGCCCGGTGGGTCCCGCCAGACCGGCGTCGAGCAGCTTGAGCTCCACCGTCGAGTCGTTCAGCGGGCCCCGGGCGGCCCCGCAGCGGTCGTCTGCGACGATCGTGGCGGAGTCGTCGCGGCGGAAACAGCCGCGTACGCCGCCGATGGATCCGGAGGATTGCCACAGCGACTGCGACTCGTCGTCCTCCGTGGTTGAGGACGACGGAGAATTCGCGTCGTCGTTTCGGAAGCCGCTGGATTTTGATCTTAATTTCCCACCGTTGGATGAGGTCGACGCGGCAGGAGGGGACGGGCAAGATCTTGGGTGGACTGCTCTGTGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

226

Amino Acids

24.39

Weight (kDa)

7.66

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	31 - 80	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	627
AccII	CGCG	8 cut(s)	15, 131, 200, 237, 472, 487, 569, 632
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	6 cut(s)	63, 76, 133, 296, 497, 510
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	563
AcyI	GRCGYC	3 cut(s)	102, 216, 380
AfaI	GTAC	2 cut(s)	95, 490
AfiI	CCNNNNNNNGG	3 cut(s)	225, 438, 616
AhdI	GACNNNNNGTC	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	3 cut(s)	322, 390, 396
AluI	AGCT	3 cut(s)	322, 390, 396
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	6 cut(s)	63, 76, 133, 296, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	525
Ama87I	CYCGRG	4 cut(s)	173, 204, 225, 423
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	5 cut(s)	54, 113, 207, 419, 429
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	32, 387, 436
ApoI	RAATTY	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AspS9I	GGNCC	9 cut(s)	47, 177, 207, 229, 239, 365, 419, 420, 430
AsuC2I	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	4 cut(s)	173, 204, 225, 423
AvaII	GGWCC	5 cut(s)	47, 177, 229, 239, 365
BaeGI	GKGCMC	1 cut(s)	423
BamHI	GGATCC	2 cut(s)	68, 502
BanII	GRGCYC	3 cut(s)	63, 398, 423
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	19, 399, 448
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	2 cut(s)	11, 100
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BcnI	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
BcoDI	GTCTC	1 cut(s)	138
BglI	GCCNNNNNGGC	2 cut(s)	29, 377
BglII	AGATCT	1 cut(s)	652
Bme1390I	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
Bme18I	GGWCC	5 cut(s)	47, 177, 229, 239, 365
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmeT110I	CYCGRG	4 cut(s)	173, 204, 225, 423
BmgT120I	GGNCC	9 cut(s)	47, 177, 207, 229, 239, 365, 419, 420, 430
BmrFI	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
BoxI	GACNNNNGTC	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
BsaBI	GATNNNNATC	1 cut(s)	597
BsaHI	GRCGYC	3 cut(s)	102, 216, 380
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	9 cut(s)	27, 97, 116, 192, 225, 235, 422, 423, 543
BsaWI	WCCGGW	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 438, 616
Bse118I	RCCGGY	2 cut(s)	52, 376
Bse8I	GATNNNNATC	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	505
BseDI	CCNNGG	9 cut(s)	27, 97, 116, 192, 225, 235, 422, 423, 543
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	225, 438, 616
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	423
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	19, 399, 448
Bsh1236I	CGCG	8 cut(s)	15, 131, 200, 237, 472, 487, 569, 632
Bsh1285I	CGRYCG	3 cut(s)	57, 443, 456
BshFI	GGCC	5 cut(s)	56, 115, 209, 421, 431
BsiEI	CGRYCG	3 cut(s)	57, 443, 456
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	4 cut(s)	173, 204, 225, 423
BsiSI	CCGG	8 cut(s)	53, 97, 163, 226, 359, 377, 424, 506
BsiWI	CGTACG	1 cut(s)	488
BslFI	GGGAC	4 cut(s)	24, 190, 351, 656
BslI	CCNNNNNNNGG	3 cut(s)	225, 438, 616
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	4 cut(s)	24, 190, 351, 656
BsnI	GGCC	5 cut(s)	56, 115, 209, 421, 431
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	4 cut(s)	173, 204, 225, 423
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	63, 398, 423
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
BspANI	GGCC	5 cut(s)	56, 115, 209, 421, 431
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	8 cut(s)	15, 131, 200, 237, 472, 487, 569, 632
BspPI	GGATC	6 cut(s)	63, 76, 133, 296, 497, 510
BspQI	GCTCTTC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	52, 376
BssAI	RCCGGY	2 cut(s)	52, 376
BssECI	CCNNGG	9 cut(s)	27, 97, 116, 192, 225, 235, 422, 423, 543
BssMI	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
BssNI	GRCGYC	3 cut(s)	102, 216, 380
Bst4CI	ACNGT	2 cut(s)	403, 615
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	3 cut(s)	102, 216, 380
BstC8I	GCNNGC	3 cut(s)	54, 320, 419
BstDSI	CCRYGG	4 cut(s)	27, 116, 235, 543
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	8 cut(s)	15, 131, 200, 237, 472, 487, 569, 632
BstKTI	GATC	7 cut(s)	71, 141, 304, 456, 505, 601, 655
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
BstMCI	CGRYCG	3 cut(s)	57, 443, 456
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	7 cut(s)	96, 162, 224, 225, 357, 422, 423
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	8 cut(s)	15, 131, 200, 237, 472, 487, 569, 632
BstV1I	GCAGC	3 cut(s)	19, 399, 448
BstX2I	RGATCY	4 cut(s)	68, 138, 502, 652
BstYI	RGATCY	4 cut(s)	68, 138, 502, 652
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	56, 115, 209, 421, 431
BtgI	CCRYGG	4 cut(s)	27, 116, 235, 543
BtsCI	GGATG	1 cut(s)	625
Cac8I	GCNNGC	3 cut(s)	54, 320, 419
CaiI	CAGNNNCTG	1 cut(s)	525
Cfr10I	RCCGGY	2 cut(s)	52, 376
Cfr13I	GGNCC	9 cut(s)	47, 177, 207, 229, 239, 365, 419, 420, 430
Cfr42I	CCGCGG	1 cut(s)	238
Cfr9I	CCCGGG	2 cut(s)	225, 423
CseI	GACGC	7 cut(s)	21, 91, 206, 224, 369, 558, 638
Csp6I	GTAC	2 cut(s)	94, 489
CviQI	GTAC	2 cut(s)	94, 489
DpnI	GATC	7 cut(s)	70, 140, 303, 455, 504, 600, 654
DpnII	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
DrdI	GACNNNNNNGTC	1 cut(s)	184
DriI	GACNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	4 cut(s)	149, 178, 476, 490
Ecl136II	GAGCTC	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	3 cut(s)	63, 398, 423
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	5 cut(s)	47, 177, 229, 239, 365
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	4 cut(s)	173, 204, 225, 423
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	4 cut(s)	177, 229, 365, 420
EcoRI	GAATTC	1 cut(s)	563
EcoT38I	GRGCYC	3 cut(s)	63, 398, 423
FaiI	YATR	1 cut(s)	153
FaqI	GGGAC	4 cut(s)	24, 190, 351, 656
FauI	CCCGC	4 cut(s)	304, 376, 410, 441
FblI	GTMKAC	1 cut(s)	627
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	3 cut(s)	63, 398, 423
HaeIII	GGCC	5 cut(s)	56, 115, 209, 421, 431
HapII	CCGG	8 cut(s)	53, 97, 163, 226, 359, 377, 424, 506
HgaI	GACGC	7 cut(s)	21, 91, 206, 224, 369, 558, 638
Hin1I	GRCGYC	3 cut(s)	102, 216, 380
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	4 cut(s)	185, 407, 464, 530
HpaII	CCGG	8 cut(s)	53, 97, 163, 226, 359, 377, 424, 506
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	628, 663
Hpy188I	TCNGA	3 cut(s)	143, 582, 680
Hpy188III	TCNNGA	4 cut(s)	72, 106, 175, 506
Hpy8I	GTNNAC	2 cut(s)	628, 663
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	403, 615
Hsp92I	GRCGYC	3 cut(s)	102, 216, 380
KflI	GGGWCCC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	505
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	17, 401
Lsp1109I	GCAGC	3 cut(s)	19, 399, 448
MaeIII	GTNAC	2 cut(s)	284, 335
MalI	GATC	7 cut(s)	70, 140, 303, 455, 504, 600, 654
MboI	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	4 cut(s)	68, 138, 502, 652
MhlI	GDGCHC	3 cut(s)	63, 398, 423
MluCI	AATT	3 cut(s)	256, 563, 604
MlyI	GAGTC	4 cut(s)	194, 416, 473, 524
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	9 cut(s)	79, 187, 242, 320, 502, 544, 550, 616, 632
MroI	TCCGGA	1 cut(s)	505
MroNI	GCCGGC	1 cut(s)	52
MseI	TTAA	2 cut(s)	81, 603
MspA1I	CMGCKG	4 cut(s)	237, 417, 439, 589
MspI	CCGG	8 cut(s)	53, 97, 163, 226, 359, 377, 424, 506
MspR9I	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
MvnI	CGCG	8 cut(s)	15, 131, 200, 237, 472, 487, 569, 632
NaeI	GCCGGC	1 cut(s)	54
NciI	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
NdeII	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
NgoMIV	GCCGGC	1 cut(s)	52
NmeAIII	GCCGAG	2 cut(s)	82, 217
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 189, 345, 449
PdiI	GCCGGC	1 cut(s)	54
Pfl23II	CGTACG	1 cut(s)	488
Ple19I	CGATCG	1 cut(s)	456
PleI	GAGTC	4 cut(s)	193, 415, 472, 524
PpsI	GAGTC	4 cut(s)	193, 415, 472, 524
PpuMI	RGGWCCY	3 cut(s)	177, 229, 365
PshAI	GACNNNNGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	398
Psp5II	RGGWCCY	3 cut(s)	177, 229, 365
PspLI	CGTACG	1 cut(s)	488
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	9 cut(s)	47, 177, 207, 229, 239, 365, 419, 420, 430
PspPPI	RGGWCCY	3 cut(s)	177, 229, 365
PstNI	CAGNNNCTG	1 cut(s)	525
PsuI	RGATCY	4 cut(s)	68, 138, 502, 652
PvuI	CGATCG	1 cut(s)	456
RsaI	GTAC	2 cut(s)	95, 490
RsaNI	GTAC	2 cut(s)	94, 489
SacI	GAGCTC	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	626
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	81, 603
Sau3AI	GATC	7 cut(s)	68, 138, 301, 453, 502, 598, 652
Sau96I	GGNCC	9 cut(s)	47, 177, 207, 229, 239, 365, 419, 420, 430
SchI	GAGTC	4 cut(s)	194, 416, 473, 524
ScrFI	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
SduI	GDGCHC	3 cut(s)	63, 398, 423
SetI	ASST	8 cut(s)	90, 182, 269, 312, 324, 392, 398, 627
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SinI	GGWCC	5 cut(s)	47, 177, 229, 239, 365
SmaI	CCCGGG	2 cut(s)	227, 425
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	256, 563, 604
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	7 cut(s)	96, 162, 224, 225, 357, 422, 423
TaaI	ACNGT	2 cut(s)	403, 615
TaqI	TCGA	5 cut(s)	183, 312, 383, 405, 627
TasI	AATT	3 cut(s)	256, 563, 604
Tru1I	TTAA	2 cut(s)	81, 603
Tru9I	TTAA	2 cut(s)	81, 603
TseI	GCWGC	3 cut(s)	32, 387, 436
TspGWI	ACGGA	3 cut(s)	81, 532, 573
TspMI	CCCGGG	2 cut(s)	225, 423
VpaK11BI	GGWCC	5 cut(s)	47, 177, 229, 239, 365
XapI	RAATTY	1 cut(s)	563
XmaI	CCCGGG	2 cut(s)	225, 423
XmiI	GTMKAC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.