pycom17g09990

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004659
Physical Location & Seq
Forward (+)
7722243 .. 7722956
714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g09990.1

Sequence Viewer

Length: 714 bp
ATGCGGCGAGGAGGCAGAGCCACTGCGGCGGCAGCAGCAGCAGCAGCAGCAGGAGTCCAATTATGCAAGCCCAAGACGGCGGTGGCCGCAGCGGTACAGGAAATTAGATTCCGGGGCGTGCGGAAGCGACCGTGGGGCCGATTCGCCGCCGAGATCAGAGACCCGTGGAAGAAGACTCGGGTCTGGCTCGGCACCTTCGACTCGGCCGAGGACGCGGCCCGGGCATATGACGCCGCCGCTCGGTCCCTCCGAGGGCCCAAGGCCAAGACTAATTTCCCTCTCCCTGCCGAATACGACAACCGCCACCACCATCTACCTCCTCCGTCCCATCCTTCTCTCTACCCCGACGACACGGTTTGCGATGTCGTCCAGGCCAGCCGGCCCACCTCCAGCAGTCTCAGCAGCACCGTCGAGTCCTTCAGCGGGCCCCGCCCCCGGCCGAGGCCCACATCCGACCCCCAGCCGCAGCGGAGACCGGTGCTCCCGGTTTCCCCCGAGGACTGCCACAGCGACTGCGACTCCTCGTCATCTGTCGTTGACGACGGCGATGATTGCGTCCTGATGTCGTCGTTCCGGAGAATCTCGCCCCTGCCGTTCGATCGATCAACCTGCCGCCGCCGACGGACGACCTCGATTTATTCAAATCCGGCGACGACGATCACGATCTTCAAGCCACCGCTTTGTGCCTCTAATTACAATATGGATCTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

238

Amino Acids

26.03

Weight (kDa)

9.74

Isoelectric Point (pI)

69.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 36 - 85 6.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 617
AccB1I GGYRCC 1 cut(s) 191
AccBSI CCGCTC 1 cut(s) 239
AccII CGCG 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 573
AclWI GGATC 1 cut(s) 711
AcoI YGGCCR 3 cut(s) 84, 204, 437
AcuI CTGAAG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 5 cut(s) 240, 252, 423, 435, 441
AgeI ACCGGT 1 cut(s) 475
AgsI TTSAA 2 cut(s) 642, 670
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 369
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 3 cut(s) 153, 401, 466
AlwI GGATC 1 cut(s) 711
AlwNI CAGNNNCTG 1 cut(s) 513
Ama87I CYCGRG 3 cut(s) 177, 219, 494
Aor13HI TCCGGA 1 cut(s) 573
ApaI GGGCCC 2 cut(s) 258, 429
ApeKI GCWGC 9 cut(s) 32, 35, 38, 41, 44, 47, 89, 402, 466
AsiGI ACCGGT 1 cut(s) 475
AspS9I GGNCC 9 cut(s) 136, 217, 243, 254, 255, 381, 425, 426, 444
AsuC2I CCSGG 5 cut(s) 113, 220, 221, 436, 485
AvaI CYCGRG 3 cut(s) 177, 219, 494
AvaII GGWCC 1 cut(s) 243
BaeGI GKGCMC 2 cut(s) 258, 429
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 258, 429
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 9 cut(s) 44, 47, 50, 53, 56, 59, 101, 414, 478
BccI CCATC 2 cut(s) 318, 336
BceAI ACGGC 3 cut(s) 93, 559, 577
BcgI CGANNNNNNTGC 4 cut(s) 391, 425, 591, 625
BciT130I CCWGG 1 cut(s) 371
BcnI CCSGG 5 cut(s) 113, 220, 221, 436, 485
BcoDI GTCTC 3 cut(s) 153, 401, 466
BfuAI ACCTGC 1 cut(s) 617
BglI GCCNNNNNGGC 1 cut(s) 26
Bme1390I CCNGG 6 cut(s) 113, 220, 221, 371, 436, 485
Bme18I GGWCC 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 523
BmeT110I CYCGRG 3 cut(s) 177, 219, 494
BmgT120I GGNCC 9 cut(s) 136, 217, 243, 254, 255, 381, 425, 426, 444
BmiI GGNNCC 6 cut(s) 137, 193, 245, 256, 427, 428
BmrFI CCNGG 6 cut(s) 113, 220, 221, 371, 436, 485
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 373
BpuMI CCSGG 5 cut(s) 113, 220, 221, 436, 485
Bsa29I ATCGAT 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 662
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 153, 466
BsaWI WCCGGW 2 cut(s) 475, 573
BsaXI ACNNNNNCTCC 4 cut(s) 465, 495, 503, 533
Bsc4I CCNNNNNNNGG 5 cut(s) 240, 252, 423, 435, 441
Bse118I RCCGGY 2 cut(s) 378, 475
Bse8I GATNNNNATC 1 cut(s) 662
BseAI TCCGGA 1 cut(s) 573
BseBI CCWGG 1 cut(s) 371
BseCI ATCGAT 1 cut(s) 601
BseGI GGATG 2 cut(s) 328, 449
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 5 cut(s) 240, 252, 423, 435, 441
BseMII CTCAG 1 cut(s) 412
BseRI GAGGAG 3 cut(s) 24, 309, 511
BseSI GKGCMC 2 cut(s) 258, 429
BseX3I CGGCCG 2 cut(s) 204, 437
BseXI GCAGC 9 cut(s) 44, 47, 50, 53, 56, 59, 101, 414, 478
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 4 cut(s) 131, 207, 440, 601
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 601
BsiEI CGRYCG 4 cut(s) 131, 207, 440, 601
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 3 cut(s) 177, 219, 494
BsiSI CCGG 8 cut(s) 112, 220, 379, 436, 476, 485, 574, 647
BslFI GGGAC 2 cut(s) 229, 310
BslI CCNNNNNNNGG 5 cut(s) 240, 252, 423, 435, 441
BsmAI GTCTC 3 cut(s) 153, 401, 466
BsmFI GGGAC 2 cut(s) 229, 310
Bso31I GGTCTC 2 cut(s) 153, 466
BsoBI CYCGRG 3 cut(s) 177, 219, 494
Bsp120I GGGCCC 2 cut(s) 254, 425
Bsp1286I GDGCHC 3 cut(s) 258, 429, 483
Bsp13I TCCGGA 1 cut(s) 573
Bsp143I GATC 6 cut(s) 153, 598, 602, 657, 663, 703
BspCNI CTCAG 1 cut(s) 411
BspDI ATCGAT 1 cut(s) 601
BspEI TCCGGA 1 cut(s) 573
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 6 cut(s) 137, 193, 245, 256, 427, 428
BspMI ACCTGC 1 cut(s) 617
BspPI GGATC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 2 cut(s) 153, 466
BsrBI CCGCTC 1 cut(s) 239
BsrFI RCCGGY 2 cut(s) 378, 475
BssAI RCCGGY 2 cut(s) 378, 475
BssMI GATC 6 cut(s) 153, 598, 602, 657, 663, 703
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 132, 355, 409
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 5 cut(s) 68, 119, 376, 380, 425
BstDEI CTNAG 1 cut(s) 398
BstDSI CCRYGG 2 cut(s) 131, 164
BstF5I GGATG 2 cut(s) 328, 449
BstFNI CGCG 1 cut(s) 215
BstKTI GATC 6 cut(s) 156, 601, 605, 660, 666, 706
BstMAI GTCTC 3 cut(s) 153, 401, 466
BstMBI GATC 6 cut(s) 153, 598, 602, 657, 663, 703
BstMCI CGRYCG 4 cut(s) 131, 207, 440, 601
BstNI CCWGG 1 cut(s) 371
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 6 cut(s) 111, 218, 219, 369, 434, 483
BstSLI GKGCMC 2 cut(s) 258, 429
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 9 cut(s) 44, 47, 50, 53, 56, 59, 101, 414, 478
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 703
BstYI RGATCY 1 cut(s) 703
BstZI CGGCCG 2 cut(s) 204, 437
Bsu15I ATCGAT 1 cut(s) 601
BsuTUI ATCGAT 1 cut(s) 601
BtgI CCRYGG 2 cut(s) 131, 164
BtgZI GCGATG 2 cut(s) 375, 561
BtsCI GGATG 2 cut(s) 328, 449
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 617
Cac8I GCNNGC 5 cut(s) 68, 119, 376, 380, 425
CaiI CAGNNNCTG 1 cut(s) 513
Cfr10I RCCGGY 2 cut(s) 378, 475
Cfr13I GGNCC 9 cut(s) 136, 217, 243, 254, 255, 381, 425, 426, 444
Cfr9I CCCGGG 1 cut(s) 219
ClaI ATCGAT 1 cut(s) 601
CseI GACGC 3 cut(s) 221, 239, 544
Csp6I GTAC 1 cut(s) 95
CspAI ACCGGT 1 cut(s) 475
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 1 cut(s) 398
DpnI GATC 6 cut(s) 155, 600, 604, 659, 665, 705
DpnII GATC 6 cut(s) 153, 598, 602, 657, 663, 703
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 3 cut(s) 84, 204, 437
EagI CGGCCG 2 cut(s) 204, 437
Eam1105I GACNNNNNGTC 1 cut(s) 523
EclXI CGGCCG 2 cut(s) 204, 437
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 258, 429
Eco31I GGTCTC 2 cut(s) 153, 466
Eco47I GGWCC 1 cut(s) 243
Eco52I CGGCCG 2 cut(s) 204, 437
Eco57I CTGAAG 1 cut(s) 403
Eco88I CYCGRG 3 cut(s) 177, 219, 494
EcoO109I RGGNCCY 2 cut(s) 254, 426
EcoRII CCWGG 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 2 cut(s) 258, 429
ErhI CCWWGG 1 cut(s) 258
FaiI YATR 4 cut(s) 64, 226, 228, 701
FaqI GGGAC 2 cut(s) 229, 310
FauI CCCGC 2 cut(s) 416, 437
FauNDI CATATG 1 cut(s) 226
FokI GGATG 2 cut(s) 315, 436
FriOI GRGCYC 2 cut(s) 258, 429
GsaI CCCAGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 373
HapII CCGG 8 cut(s) 112, 220, 379, 436, 476, 485, 574, 647
HgaI GACGC 3 cut(s) 221, 239, 544
Hin1I GRCGYC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 8 cut(s) 54, 108, 141, 175, 200, 413, 518, 579
HpaII CCGG 8 cut(s) 112, 220, 379, 436, 476, 485, 574, 647
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 3 cut(s) 158, 251, 454
Hpy188III TCNNGA 3 cut(s) 559, 574, 661
Hpy8I GTNNAC 1 cut(s) 538
Hpy99I CGWCG 7 cut(s) 350, 413, 545, 571, 624, 655, 658
HpyAV CCTTC 3 cut(s) 205, 342, 427
HpyCH4III ACNGT 3 cut(s) 132, 355, 409
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 398
Hsp92I GRCGYC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 573
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Kzo9I GATC 6 cut(s) 153, 598, 602, 657, 663, 703
LmnI GCTCC 1 cut(s) 486
Lsp1109I GCAGC 9 cut(s) 44, 47, 50, 53, 56, 59, 101, 414, 478
MalI GATC 6 cut(s) 155, 600, 604, 659, 665, 705
MbiI CCGCTC 1 cut(s) 239
MboI GATC 6 cut(s) 153, 598, 602, 657, 663, 703
MboII GAAGA 3 cut(s) 181, 184, 658
MflI RGATCY 1 cut(s) 703
MhlI GDGCHC 3 cut(s) 258, 429, 483
MluCI AATT 4 cut(s) 59, 102, 271, 691
MlyI GAGTC 5 cut(s) 63, 169, 194, 422, 512
MmeI TCCRAC 1 cut(s) 477
MroI TCCGGA 1 cut(s) 573
MroNI GCCGGC 1 cut(s) 378
MspA1I CMGCKG 3 cut(s) 92, 423, 469
MspI CCGG 8 cut(s) 112, 220, 379, 436, 476, 485, 574, 647
MspR9I CCNGG 6 cut(s) 113, 220, 221, 371, 436, 485
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 215
NaeI GCCGGC 1 cut(s) 380
NciI CCSGG 5 cut(s) 113, 220, 221, 436, 485
NdeI CATATG 1 cut(s) 226
NdeII GATC 6 cut(s) 153, 598, 602, 657, 663, 703
NgoMIV GCCGGC 1 cut(s) 378
NlaIV GGNNCC 6 cut(s) 137, 193, 245, 256, 427, 428
NmeAIII GCCGAG 5 cut(s) 168, 175, 182, 232, 465
PcsI WCGNNNNNNNCGW 5 cut(s) 195, 204, 247, 590, 659
PdiI GCCGGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 108, 141, 579
PinAI ACCGGT 1 cut(s) 475
Ple19I CGATCG 1 cut(s) 601
PleI GAGTC 5 cut(s) 62, 169, 194, 421, 512
PpsI GAGTC 5 cut(s) 62, 169, 194, 421, 512
PshAI GACNNNNGTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 369
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 6 cut(s) 137, 193, 245, 256, 427, 428
PspOMI GGGCCC 2 cut(s) 254, 425
PspPI GGNCC 9 cut(s) 136, 217, 243, 254, 255, 381, 425, 426, 444
PstNI CAGNNNCTG 1 cut(s) 513
PsuI RGATCY 1 cut(s) 703
PvuI CGATCG 1 cut(s) 601
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
Sau3AI GATC 6 cut(s) 153, 598, 602, 657, 663, 703
Sau96I GGNCC 9 cut(s) 136, 217, 243, 254, 255, 381, 425, 426, 444
SchI GAGTC 5 cut(s) 63, 169, 194, 422, 512
ScrFI CCNGG 6 cut(s) 113, 220, 221, 371, 436, 485
SduI GDGCHC 3 cut(s) 258, 429, 483
SetI ASST 5 cut(s) 197, 319, 389, 611, 632
SinI GGWCC 1 cut(s) 243
SmaI CCCGGG 1 cut(s) 221
SrfI GCCCGGGC 1 cut(s) 221
Sse9I AATT 4 cut(s) 59, 102, 271, 691
StyD4I CCNGG 6 cut(s) 111, 218, 219, 369, 434, 483
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 3 cut(s) 132, 355, 409
TaqI TCGA 5 cut(s) 198, 411, 597, 601, 632
TaqII GACCGA 1 cut(s) 231
TasI AATT 4 cut(s) 59, 102, 271, 691
TfiI GAWTC 3 cut(s) 108, 141, 579
TscAI CASTG 1 cut(s) 28
TseI GCWGC 9 cut(s) 32, 35, 38, 41, 44, 47, 89, 402, 466
TspGWI ACGGA 2 cut(s) 312, 637
TspMI CCCGGG 1 cut(s) 219
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XmaI CCCGGG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.