Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Forward (+)

16470344 .. 16471997

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGGAGGGGACGCGGAGCCGCCACTGCGGCTGCCAGAGGAAATGGGTCGCCGGCCGAGCCCAATGGAGCCAGACCCATTAAAGAGGTGAAGTACCGGGGCGTCAGGAAAAGACCGTGGGGAAAATACGCGGCGGAGATCCGAGACCCGTATAAGAAGAGCCGGGTCTGGCTTGGTACCTTCGAGTCCGCCGAGGACGCGGCTCGGGCCTACGACGCCGCCGCCCGGGTCCTCCGCGGACCCAAAGCCAAGACCAATTTCCCGACCTACTCCAGCCATTTCTGTTACAACAACCCGACGGATCCCAACTTCGACGGCAAGTTGTTCGGGTCGGGTTACGGGTTTCAAGACGATAACCAAATGGGTCCCGCCAGACCTGCGTCGAGCAGCTTGAGCTCCACCGTGGAGTCGTTTAGCGGGCCGCGGCCGGCGCCGCAGCGGTCGACGACGATCGTTGCGGCGGAGTCGTCGCGGCGGAAGCAGCCGCGGACGCCGCCGATGGATCCGGAGGATTGCCACAGCGACTGCGACTCGTCGTCCTCGGTGGTTGAGGACGACGGGGAGTTCGCGGCGTCGTCGTCGTTTCGGAAGCCGCTGGAGTTTGATCTTAATTTCCCACCGTTGGATGAGGTCGACGCGGCAGGAGGAGGTGACGGTCATGATCTTGGCTGGACGGCTCTGTGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

24.76

Weight (kDa)

7.66

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	31 - 80	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	2 cut(s)	176, 430
AccI	GTMKAC	2 cut(s)	443, 633
AccII	CGCG	9 cut(s)	15, 131, 200, 237, 424, 472, 487, 569, 638
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	5 cut(s)	133, 296, 309, 497, 510
AcoI	YGGCCR	2 cut(s)	54, 425
AcyI	GRCGYC	5 cut(s)	102, 216, 431, 491, 572
AfaI	GTAC	2 cut(s)	95, 178
AfiI	CCNNNNNNNGG	2 cut(s)	225, 622
AgsI	TTSAA	1 cut(s)	347
AhdI	GACNNNNNGTC	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	390, 396
AluI	AGCT	2 cut(s)	390, 396
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	5 cut(s)	133, 296, 309, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	525
Ama87I	CYCGRG	2 cut(s)	204, 225
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	4 cut(s)	54, 207, 419, 425
ApeKI	GCWGC	4 cut(s)	32, 387, 436, 481
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
Asp718I	GGTACC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	5 cut(s)	207, 229, 239, 365, 419
AsuC2I	CCSGG	4 cut(s)	98, 164, 226, 227
AsuHPI	GGTGA	2 cut(s)	100, 662
AvaI	CYCGRG	2 cut(s)	204, 225
AvaII	GGWCC	3 cut(s)	229, 239, 365
BamHI	GGATCC	2 cut(s)	301, 502
BanI	GGYRCC	2 cut(s)	176, 430
BanII	GRGCYC	2 cut(s)	63, 398
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	4 cut(s)	19, 399, 448, 493
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BcnI	CCSGG	4 cut(s)	98, 164, 226, 227
BcoDI	GTCTC	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	29
Bme1390I	CCNGG	4 cut(s)	98, 164, 226, 227
Bme18I	GGWCC	3 cut(s)	229, 239, 365
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmeT110I	CYCGRG	2 cut(s)	204, 225
BmgT120I	GGNCC	5 cut(s)	207, 229, 239, 365, 419
BmrFI	CCNGG	4 cut(s)	98, 164, 226, 227
BoxI	GACNNNNGTC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	256, 617
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	4 cut(s)	98, 164, 226, 227
BsaHI	GRCGYC	5 cut(s)	102, 216, 431, 491, 572
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	9 cut(s)	97, 116, 192, 225, 235, 402, 422, 485, 540
BsaWI	WCCGGW	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 622
Bse118I	RCCGGY	2 cut(s)	52, 427
BseAI	TCCGGA	1 cut(s)	505
BseDI	CCNNGG	9 cut(s)	97, 116, 192, 225, 235, 402, 422, 485, 540
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	225, 622
BseRI	GAGGAG	2 cut(s)	19, 660
BseX3I	CGGCCG	2 cut(s)	54, 425
BseXI	GCAGC	4 cut(s)	19, 399, 448, 493
Bsh1236I	CGCG	9 cut(s)	15, 131, 200, 237, 424, 472, 487, 569, 638
Bsh1285I	CGRYCG	4 cut(s)	57, 428, 443, 453
BshFI	GGCC	4 cut(s)	56, 209, 421, 427
BshNI	GGYRCC	2 cut(s)	176, 430
BsiEI	CGRYCG	4 cut(s)	57, 428, 443, 453
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	2 cut(s)	204, 225
BsiSI	CCGG	6 cut(s)	53, 97, 163, 226, 428, 506
BslFI	GGGAC	2 cut(s)	24, 351
BslI	CCNNNNNNNGG	2 cut(s)	225, 622
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	24, 351
BsnI	GGCC	4 cut(s)	56, 209, 421, 427
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	2 cut(s)	204, 225
Bsp1286I	GDGCHC	2 cut(s)	63, 398
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
BspANI	GGCC	4 cut(s)	56, 209, 421, 427
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	9 cut(s)	15, 131, 200, 237, 424, 472, 487, 569, 638
BspHI	TCATGA	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	5 cut(s)	133, 296, 309, 497, 510
BspQI	GCTCTTC	1 cut(s)	152
BspT107I	GGYRCC	2 cut(s)	176, 430
BspTNI	GGTCTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	52, 427
BssAI	RCCGGY	2 cut(s)	52, 427
BssECI	CCNNGG	9 cut(s)	97, 116, 192, 225, 235, 402, 422, 485, 540
BssMI	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
BssNI	GRCGYC	5 cut(s)	102, 216, 431, 491, 572
Bst4CI	ACNGT	4 cut(s)	117, 403, 621, 656
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	5 cut(s)	102, 216, 431, 491, 572
BstC8I	GCNNGC	3 cut(s)	54, 419, 429
BstDSI	CCRYGG	5 cut(s)	116, 235, 402, 422, 485
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	9 cut(s)	15, 131, 200, 237, 424, 472, 487, 569, 638
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	6 cut(s)	141, 304, 453, 505, 607, 664
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
BstMCI	CGRYCG	4 cut(s)	57, 428, 443, 453
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	96, 162, 224, 225
BstUI	CGCG	9 cut(s)	15, 131, 200, 237, 424, 472, 487, 569, 638
BstV1I	GCAGC	4 cut(s)	19, 399, 448, 493
BstX2I	RGATCY	3 cut(s)	138, 301, 502
BstYI	RGATCY	3 cut(s)	138, 301, 502
BstZI	CGGCCG	2 cut(s)	54, 425
BsuRI	GGCC	4 cut(s)	56, 209, 421, 427
BtgI	CCRYGG	5 cut(s)	116, 235, 402, 422, 485
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	3 cut(s)	54, 419, 429
CaiI	CAGNNNCTG	1 cut(s)	525
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	2 cut(s)	52, 427
Cfr13I	GGNCC	5 cut(s)	207, 229, 239, 365, 419
Cfr42I	CCGCGG	3 cut(s)	238, 425, 488
Cfr9I	CCCGGG	1 cut(s)	225
CseI	GACGC	8 cut(s)	21, 91, 206, 224, 369, 499, 561, 644
Csp6I	GTAC	2 cut(s)	94, 177
CviAII	CATG	1 cut(s)	659
CviQI	GTAC	2 cut(s)	94, 177
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	6 cut(s)	140, 303, 452, 504, 606, 663
DpnII	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
DriI	GACNNNNNGTC	1 cut(s)	535
EaeI	YGGCCR	2 cut(s)	54, 425
EagI	CGGCCG	2 cut(s)	54, 425
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	4 cut(s)	149, 178, 476, 490
Ecl136II	GAGCTC	1 cut(s)	396
EclXI	CGGCCG	2 cut(s)	54, 425
Eco24I	GRGCYC	2 cut(s)	63, 398
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	229, 239, 365
Eco52I	CGGCCG	2 cut(s)	54, 425
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	2 cut(s)	204, 225
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	229, 365
EcoT38I	GRGCYC	2 cut(s)	63, 398
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
FaeI	CATG	1 cut(s)	662
FaiI	YATR	2 cut(s)	153, 660
FaqI	GGGAC	2 cut(s)	24, 351
FatI	CATG	1 cut(s)	658
FauI	CCCGC	2 cut(s)	376, 410
FblI	GTMKAC	2 cut(s)	443, 633
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	2 cut(s)	63, 398
GlaI	GCGC	1 cut(s)	432
GsuI	CTGGAG	2 cut(s)	256, 617
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	4 cut(s)	56, 209, 421, 427
HapII	CCGG	6 cut(s)	53, 97, 163, 226, 428, 506
HgaI	GACGC	8 cut(s)	21, 91, 206, 224, 369, 499, 561, 644
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	5 cut(s)	102, 216, 431, 491, 572
Hin1II	CATG	1 cut(s)	662
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	2 cut(s)	444, 634
HindII	GTYRAC	2 cut(s)	444, 634
HinfI	GANTC	4 cut(s)	185, 407, 464, 530
HpaII	CCGG	6 cut(s)	53, 97, 163, 226, 428, 506
HphI	GGTGA	2 cut(s)	100, 662
Hpy166II	GTNNAC	2 cut(s)	444, 634
Hpy188I	TCNGA	3 cut(s)	143, 588, 689
Hpy188III	TCNNGA	5 cut(s)	106, 262, 347, 506, 659
Hpy8I	GTNNAC	2 cut(s)	444, 634
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	4 cut(s)	117, 403, 621, 656
Hsp92I	GRCGYC	5 cut(s)	102, 216, 431, 491, 572
Hsp92II	CATG	1 cut(s)	662
HspAI	GCGC	1 cut(s)	431
KasI	GGCGCC	1 cut(s)	430
KflI	GGGWCCC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	505
KpnI	GGTACC	1 cut(s)	180
KroI	GCCGGC	2 cut(s)	52, 427
KroNI	GCCGGC	2 cut(s)	54, 429
KspI	CCGCGG	3 cut(s)	238, 425, 488
Kzo9I	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	3 cut(s)	17, 68, 401
Lsp1109I	GCAGC	4 cut(s)	19, 399, 448, 493
MaeIII	GTNAC	3 cut(s)	284, 335, 650
MalI	GATC	6 cut(s)	140, 303, 452, 504, 606, 663
MboI	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	3 cut(s)	138, 301, 502
MhlI	GDGCHC	2 cut(s)	63, 398
MluCI	AATT	2 cut(s)	256, 610
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	4 cut(s)	194, 416, 473, 524
MmeI	TCCRAC	1 cut(s)	603
MroI	TCCGGA	1 cut(s)	505
MroNI	GCCGGC	2 cut(s)	52, 427
MseI	TTAA	2 cut(s)	81, 609
MspA1I	CMGCKG	5 cut(s)	237, 424, 439, 487, 595
MspI	CCGG	6 cut(s)	53, 97, 163, 226, 428, 506
MspR9I	CCNGG	4 cut(s)	98, 164, 226, 227
MvnI	CGCG	9 cut(s)	15, 131, 200, 237, 424, 472, 487, 569, 638
NaeI	GCCGGC	2 cut(s)	54, 429
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	4 cut(s)	98, 164, 226, 227
NdeII	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
NgoMIV	GCCGGC	2 cut(s)	52, 427
NlaIII	CATG	1 cut(s)	662
NmeAIII	GCCGAG	2 cut(s)	82, 217
NmuCI	GTSAC	1 cut(s)	650
PagI	TCATGA	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	2 cut(s)	54, 429
Ple19I	CGATCG	1 cut(s)	453
PleI	GAGTC	4 cut(s)	193, 415, 472, 524
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	4 cut(s)	193, 415, 472, 524
PpuMI	RGGWCCY	2 cut(s)	229, 365
PshAI	GACNNNNGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	398
Psp5II	RGGWCCY	2 cut(s)	229, 365
PspPI	GGNCC	5 cut(s)	207, 229, 239, 365, 419
PspPPI	RGGWCCY	2 cut(s)	229, 365
PstNI	CAGNNNCTG	1 cut(s)	525
PsuI	RGATCY	3 cut(s)	138, 301, 502
PvuI	CGATCG	1 cut(s)	453
RsaI	GTAC	2 cut(s)	95, 178
RsaNI	GTAC	2 cut(s)	94, 177
SacI	GAGCTC	1 cut(s)	398
SacII	CCGCGG	3 cut(s)	238, 425, 488
SalI	GTCGAC	2 cut(s)	442, 632
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	81, 609
Sau3AI	GATC	6 cut(s)	138, 301, 450, 502, 604, 661
Sau96I	GGNCC	5 cut(s)	207, 229, 239, 365, 419
SchI	GAGTC	4 cut(s)	194, 416, 473, 524
ScrFI	CCNGG	4 cut(s)	98, 164, 226, 227
SduI	GDGCHC	2 cut(s)	63, 398
SetI	ASST	8 cut(s)	90, 182, 269, 379, 392, 398, 633, 652
SfoI	GGCGCC	1 cut(s)	432
Sfr303I	CCGCGG	3 cut(s)	238, 425, 488
SgrBI	CCGCGG	3 cut(s)	238, 425, 488
SinI	GGWCC	3 cut(s)	229, 239, 365
SmaI	CCCGGG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	2 cut(s)	256, 610
SspDI	GGCGCC	1 cut(s)	430
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	4 cut(s)	96, 162, 224, 225
TaaI	ACNGT	4 cut(s)	117, 403, 621, 656
TaqI	TCGA	5 cut(s)	183, 312, 383, 443, 633
TasI	AATT	2 cut(s)	256, 610
Tru1I	TTAA	2 cut(s)	81, 609
Tru9I	TTAA	2 cut(s)	81, 609
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	4 cut(s)	32, 387, 436, 481
Tsp45I	GTSAC	1 cut(s)	650
TspGWI	ACGGA	1 cut(s)	314
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	3 cut(s)	229, 239, 365
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	2 cut(s)	443, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.