Rroxscaffold_2G00091860

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004659
Physical Location & Seq
Forward (+)
13400275 .. 13400964
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091860.1

Sequence Viewer

Length: 690 bp
ATGCGGCGAGCAGGCAGAGCCACCGCTGCTGCAGCCAACAACCAATCACCGGCATCATGCAAGAAGCCCAGGGCGGCAGTCGCAGCTCCGAAAACGACGCCGTCTTCGTCGCAGCAGCAACCGCAAATCAGATTCCGCGGCGTGCGGAAGCGGCCGTGGGGCCGATTCGCCGCCGAGATCAGAGACCCGTGGAAGAAGACGCGTGTCTGGCTCGGGACCTTCGATTCCGCCGAGGACGCGGCCAGAGCGTATGATGCCGCCGCCCGATCGTTACGGGGGCCCAAGGCCAAGACCAACTTCTCCCTGCCCTGCGATCCTTTCTACGGCGGCGATTTCAACGACGACGCGATTTGTTCTAAGATCGATGTGATTCAGGCCAGCCGGCCGACCTCCAGCAGCCTCAGCAGCACCGTCGAGTCCTTCAGCGGACCGAGGGTCAACTCCGGCAAGCCTCCTCCGATGAAACCCACGCAGCGGAGACCGGTGTATCCGGTTTCGCCAGAGGACTGCCACAGCGATTGTGACTCATCTTCCTCCGTCGTCGACGACGGTGACGATTGCGTCCTCACGTCGTCTTTCCGGAAAGCCCTGCCCTTCGATCTGAACATGCCGCCGCCGATGGATGCTTTTGATTTCTCCGGCGACAACGTGGATGATCACGATCTTCAAGCCACCGCGCTCTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

229

Amino Acids

24.83

Weight (kDa)

8.69

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 44 - 93 6.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AccI GTMKAC 1 cut(s) 543
AccII CGCG 5 cut(s) 138, 202, 239, 347, 677
AccIII TCCGGA 1 cut(s) 579
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 3 cut(s) 152, 240, 383
AcuI CTGAAG 1 cut(s) 406
AcyI GRCGYC 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 49, 323, 474
AflIII ACRYGT 1 cut(s) 200
AgeI ACCGGT 1 cut(s) 481
AgsI TTSAA 2 cut(s) 337, 668
AhdI GACNNNNNGTC 1 cut(s) 434
AjiI CACGTC 1 cut(s) 570
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 177, 472
AlwI GGATC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 579
AoxI GGCC 7 cut(s) 152, 160, 240, 278, 285, 375, 383
ApaI GGGCCC 1 cut(s) 282
ApeKI GCWGC 9 cut(s) 26, 29, 32, 83, 112, 115, 396, 405, 472
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 481
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 5 cut(s) 160, 216, 278, 279, 428
AsuHPI GGTGA 2 cut(s) 39, 563
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 216, 428
BaeGI GKGCMC 1 cut(s) 282
BaeI ACNNNNGTAYC 2 cut(s) 470, 503
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 2 cut(s) 96, 203
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 9 cut(s) 13, 16, 44, 95, 124, 127, 408, 417, 484
BccI CCATC 1 cut(s) 613
BceAI ACGGC 3 cut(s) 85, 139, 340
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 70
BciVI GTATCC 1 cut(s) 498
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 177, 472
BfmI CTRYAG 1 cut(s) 30
BfuI GTATCC 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 216, 428
BmeRI GACNNNNNGTC 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 570
BmgT120I GGNCC 5 cut(s) 160, 216, 278, 279, 428
BmiI GGNNCC 4 cut(s) 161, 217, 279, 280
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 62, 244, 613
BoxI GACNNNNGTC 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 96, 203
BpmI CTGGAG 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 98
BsaI GGTCTC 2 cut(s) 177, 472
BsaJI CCNNGG 8 cut(s) 68, 69, 136, 155, 188, 231, 282, 431
BsaWI WCCGGW 3 cut(s) 481, 490, 579
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 323, 474
Bse118I RCCGGY 3 cut(s) 49, 381, 481
Bse8I GATNNNNATC 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 579
BseBI CCWGG 1 cut(s) 70
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 8 cut(s) 68, 69, 136, 155, 188, 231, 282, 431
BseGI GGATG 2 cut(s) 628, 658
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 3 cut(s) 49, 323, 474
BseMII CTCAG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 282
BseX3I CGGCCG 2 cut(s) 152, 383
BseXI GCAGC 9 cut(s) 13, 16, 44, 95, 124, 127, 408, 417, 484
Bsh1236I CGCG 5 cut(s) 138, 202, 239, 347, 677
Bsh1285I CGRYCG 3 cut(s) 155, 269, 386
BshFI GGCC 7 cut(s) 154, 162, 242, 280, 287, 377, 385
BshTI ACCGGT 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 3 cut(s) 155, 269, 386
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 7 cut(s) 50, 382, 444, 482, 491, 580, 639
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 49, 323, 474
BsmAI GTCTC 2 cut(s) 177, 472
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 7 cut(s) 154, 162, 242, 280, 287, 377, 385
Bso31I GGTCTC 2 cut(s) 177, 472
BsoBI CYCGRG 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 282
Bsp13I TCCGGA 1 cut(s) 579
Bsp143I GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
BspANI GGCC 7 cut(s) 154, 162, 242, 280, 287, 377, 385
BspCNI CTCAG 1 cut(s) 414
BspDI ATCGAT 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 579
BspFNI CGCG 5 cut(s) 138, 202, 239, 347, 677
BspLI GGNNCC 4 cut(s) 161, 217, 279, 280
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 308
BspTNI GGTCTC 2 cut(s) 177, 472
BsrFI RCCGGY 3 cut(s) 49, 381, 481
BssAI RCCGGY 3 cut(s) 49, 381, 481
BssECI CCNNGG 8 cut(s) 68, 69, 136, 155, 188, 231, 282, 431
BssMI GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 412, 551
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 6 cut(s) 9, 13, 143, 379, 383, 449
BstDEI CTNAG 2 cut(s) 357, 401
BstDSI CCRYGG 3 cut(s) 136, 155, 188
BstF5I GGATG 2 cut(s) 628, 658
BstFNI CGCG 5 cut(s) 138, 202, 239, 347, 677
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 7 cut(s) 180, 269, 316, 363, 601, 658, 664
BstMAI GTCTC 2 cut(s) 177, 472
BstMBI GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
BstMCI CGRYCG 3 cut(s) 155, 269, 386
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 610
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 5 cut(s) 138, 202, 239, 347, 677
BstV1I GCAGC 9 cut(s) 13, 16, 44, 95, 124, 127, 408, 417, 484
BstV2I GAAGAC 2 cut(s) 96, 203
BstZI CGGCCG 2 cut(s) 152, 383
Bsu15I ATCGAT 1 cut(s) 363
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 7 cut(s) 154, 162, 242, 280, 287, 377, 385
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 3 cut(s) 136, 155, 188
BtrI CACGTC 1 cut(s) 570
BtsCI GGATG 2 cut(s) 628, 658
Cac8I GCNNGC 6 cut(s) 9, 13, 143, 379, 383, 449
CfoI GCGC 1 cut(s) 679
Cfr10I RCCGGY 3 cut(s) 49, 381, 481
Cfr13I GGNCC 5 cut(s) 160, 216, 278, 279, 428
Cfr42I CCGCGG 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 363
CpoI CGGWCCG 1 cut(s) 428
CseI GACGC 5 cut(s) 106, 208, 245, 353, 550
CspAI ACCGGT 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 500, 535
CspI CGGWCCG 1 cut(s) 428
CviAII CATG 2 cut(s) 57, 607
DdeI CTNAG 2 cut(s) 357, 401
DpnI GATC 7 cut(s) 179, 268, 315, 362, 600, 657, 663
DpnII GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
DrdI GACNNNNNNGTC 1 cut(s) 560
DriI GACNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 3 cut(s) 152, 240, 383
EagI CGGCCG 2 cut(s) 152, 383
Eam1105I GACNNNNNGTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 217
EclXI CGGCCG 2 cut(s) 152, 383
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 2 cut(s) 177, 472
Eco47I GGWCC 2 cut(s) 216, 428
Eco52I CGGCCG 2 cut(s) 152, 383
Eco57I CTGAAG 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 216, 278
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 60, 610
FaiI YATR 3 cut(s) 58, 252, 608
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 56, 606
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 543
FokI GGATG 2 cut(s) 635, 665
FriOI GRGCYC 1 cut(s) 282
GlaI GCGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 7 cut(s) 154, 162, 242, 280, 287, 377, 385
HapII CCGG 7 cut(s) 50, 382, 444, 482, 491, 580, 639
HgaI GACGC 5 cut(s) 106, 208, 245, 353, 550
HhaI GCGC 1 cut(s) 679
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 2 cut(s) 60, 610
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HincII GTYRAC 2 cut(s) 439, 544
HindII GTYRAC 2 cut(s) 439, 544
HinfI GANTC 6 cut(s) 132, 165, 224, 370, 416, 524
HpaII CCGG 7 cut(s) 50, 382, 444, 482, 491, 580, 639
HphI GGTGA 2 cut(s) 39, 563
Hpy166II GTNNAC 2 cut(s) 439, 544
Hpy188I TCNGA 6 cut(s) 90, 131, 182, 459, 603, 689
Hpy188III TCNNGA 3 cut(s) 214, 580, 659
Hpy8I GTNNAC 2 cut(s) 439, 544
HpyAV CCTTC 3 cut(s) 229, 430, 604
HpyCH4III ACNGT 2 cut(s) 412, 551
HpyCH4IV ACGT 2 cut(s) 569, 648
HpyCH4V TGCA 2 cut(s) 32, 60
HpyF3I CTNAG 2 cut(s) 357, 401
HpySE526I ACGT 2 cut(s) 569, 648
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 60, 610
HspAI GCGC 1 cut(s) 677
Kpn2I TCCGGA 1 cut(s) 579
KroI GCCGGC 1 cut(s) 381
KroNI GCCGGC 1 cut(s) 383
Ksp22I TGATCA 1 cut(s) 655
KspI CCGCGG 1 cut(s) 139
Kzo9I GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 9 cut(s) 13, 16, 44, 95, 124, 127, 408, 417, 484
LweI GCATC 3 cut(s) 62, 244, 613
MaeII ACGT 2 cut(s) 569, 648
MaeIII GTNAC 3 cut(s) 270, 521, 551
MalI GATC 7 cut(s) 179, 268, 315, 362, 600, 657, 663
MboI GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
MboII GAAGA 5 cut(s) 96, 205, 208, 522, 656
MhlI GDGCHC 1 cut(s) 282
MluI ACGCGT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 425, 518
MnlI CCTC 9 cut(s) 226, 400, 410, 426, 462, 465, 496, 544, 575
MroI TCCGGA 1 cut(s) 579
MroNI GCCGGC 1 cut(s) 381
MspA1I CMGCKG 4 cut(s) 26, 138, 426, 475
MspI CCGG 7 cut(s) 50, 382, 444, 482, 491, 580, 639
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 5 cut(s) 138, 202, 239, 347, 677
NaeI GCCGGC 1 cut(s) 383
NdeII GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
NgoMIV GCCGGC 1 cut(s) 381
NlaIII CATG 2 cut(s) 60, 610
NlaIV GGNNCC 4 cut(s) 161, 217, 279, 280
NmeAIII GCCGAG 2 cut(s) 199, 256
NmuCI GTSAC 2 cut(s) 521, 551
NspI RCATGY 1 cut(s) 610
PasI CCCWGGG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 4 cut(s) 104, 219, 228, 552
PdiI GCCGGC 1 cut(s) 383
PfeI GAWTC 4 cut(s) 132, 165, 224, 370
PflFI GACNNNGTC 1 cut(s) 100
PinAI ACCGGT 1 cut(s) 481
Ple19I CGATCG 1 cut(s) 269
PleI GAGTC 2 cut(s) 424, 518
PpsI GAGTC 2 cut(s) 424, 518
PpuMI RGGWCCY 1 cut(s) 216
PshAI GACNNNNGTC 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 161, 217, 279, 280
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 5 cut(s) 160, 216, 278, 279, 428
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 100
PvuI CGATCG 1 cut(s) 269
Rsr2I CGGWCCG 1 cut(s) 428
RsrII CGGWCCG 1 cut(s) 428
SacII CCGCGG 1 cut(s) 139
SalI GTCGAC 1 cut(s) 542
Sau3AI GATC 7 cut(s) 177, 266, 313, 360, 598, 655, 661
Sau96I GGNCC 5 cut(s) 160, 216, 278, 279, 428
SchI GAGTC 2 cut(s) 425, 518
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 282
SetI ASST 5 cut(s) 88, 221, 392, 572, 651
SfaNI GCATC 3 cut(s) 62, 244, 613
SfcI CTRYAG 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 139
SgrBI CCGCGG 1 cut(s) 139
SgrDI CGTCGACG 1 cut(s) 542
SinI GGWCC 2 cut(s) 216, 428
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 412, 551
TaiI ACGT 2 cut(s) 572, 651
TaqI TCGA 5 cut(s) 222, 363, 414, 543, 597
TaqII GACCGA 1 cut(s) 445
TfiI GAWTC 4 cut(s) 132, 165, 224, 370
TseFI GTSAC 2 cut(s) 521, 551
TseI GCWGC 9 cut(s) 26, 29, 32, 83, 112, 115, 396, 405, 472
Tsp45I GTSAC 2 cut(s) 521, 551
TspDTI ATGAA 1 cut(s) 476
TspGWI ACGGA 1 cut(s) 526
Tth111I GACNNNGTC 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 216, 428
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.