Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Forward (+)

13957295 .. 13959001

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G222300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGGAGGGGCAGAGGAGCCGCCGCCAGAGCCGCAGCAGCGACGCCGGCAGAACCCGCCGGATCCAGGCCCAATATCGCCAACGAGGTCCGGTATCGGGGGGTCCGCAAAAGACCATGGGGACGGTTCGCGGCCGAGATCCGAGACCCGTGGAAGAAGACCCGGGTTTGGCTCGGCACCTTCGACTCGGCCGAAGACGCCGCACGAGCCTATGACGCTGCCGCTCACATCCTCCGCGGCCCCAAAGCCAAGACCAACTTCCCGATCTCATGTGCTTACCCTCCTCCCCTCTACAACAACCCAACCGACCAGGCCATTGAGACGAAGCTTTTCGGGTCGGGTTACGGGTTTCAGGACAACCCGGTTGTCGATCCGCAGAGGCCCACGTCCAGCAGCCTCAGCTCCACCGTCGAGTCGTTCAGTGGGCCCCGGCCGCCGCCTCAGTCTACGACGATTGCCGCCGAGTCGTCTCGGCGGAAACGACAGCCGAGGACCCCGCCGGTTGTTCCCGAGGACTGCCACAGCGACTGCGACTCGTCGTCTTCAGTTGTGGAGGACGACGGGGATTTCGCCGCGTCGTCGTCGTTTCGGAAGACCCTGCTGCCCTTCGATCTCAATTTCCCGCCGTTGGATGAGGAGGGGGAGTTGGGCGGTGGGGAGGGTCAGGATCTAAGATGTACGGCTCTATGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

232

Amino Acids

25.02

Weight (kDa)

7.62

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	3 cut(s)	131, 237, 575
AclWI	GGATC	5 cut(s)	57, 70, 133, 365, 675
AcoI	YGGCCR	3 cut(s)	132, 189, 431
AcuI	CTGAAG	1 cut(s)	528
AcyI	GRCGYC	2 cut(s)	44, 198
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	4 cut(s)	66, 97, 168, 628
AhdI	GACNNNNNGTC	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	387
AjnI	CCWGG	2 cut(s)	65, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	328, 402
AluI	AGCT	2 cut(s)	328, 402
Alw26I	GTCTC	3 cut(s)	138, 314, 474
AlwI	GGATC	5 cut(s)	57, 70, 133, 365, 675
AlwNI	CAGNNNCTG	1 cut(s)	528
Ama87I	CYCGRG	2 cut(s)	162, 509
AoxI	GGCC	8 cut(s)	68, 132, 189, 238, 312, 380, 425, 431
ApaI	GGGCCC	1 cut(s)	429
ApeKI	GCWGC	5 cut(s)	35, 38, 218, 393, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	8 cut(s)	69, 88, 103, 239, 381, 425, 426, 492
AsuC2I	CCSGG	4 cut(s)	163, 164, 362, 430
AvaI	CYCGRG	2 cut(s)	162, 509
AvaII	GGWCC	3 cut(s)	88, 103, 492
BaeGI	GKGCMC	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	4 cut(s)	164, 201, 534, 599
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	5 cut(s)	47, 50, 205, 405, 588
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	2 cut(s)	67, 311
BcnI	CCSGG	4 cut(s)	163, 164, 362, 430
BcoDI	GTCTC	3 cut(s)	138, 314, 474
Bme1390I	CCNGG	6 cut(s)	67, 163, 164, 311, 362, 430
Bme18I	GGWCC	3 cut(s)	88, 103, 492
BmeRI	GACNNNNNGTC	1 cut(s)	538
BmeT110I	CYCGRG	2 cut(s)	162, 509
BmgBI	CACGTC	1 cut(s)	387
BmgT120I	GGNCC	8 cut(s)	69, 88, 103, 239, 381, 425, 426, 492
BmiI	GGNNCC	8 cut(s)	19, 64, 104, 178, 241, 427, 428, 494
BmrFI	CCNGG	6 cut(s)	67, 163, 164, 311, 362, 430
BpiI	GAAGAC	4 cut(s)	164, 201, 534, 599
Bpu10I	CCTNAGC	1 cut(s)	398
BpuMI	CCSGG	4 cut(s)	163, 164, 362, 430
BsaHI	GRCGYC	2 cut(s)	44, 198
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	7 cut(s)	116, 149, 162, 235, 428, 488, 510
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 97, 168, 628
Bse118I	RCCGGY	2 cut(s)	46, 499
BseBI	CCWGG	2 cut(s)	67, 311
BseDI	CCNNGG	7 cut(s)	116, 149, 162, 235, 428, 488, 510
BseGI	GGATG	2 cut(s)	228, 637
BseLI	CCNNNNNNNGG	4 cut(s)	66, 97, 168, 628
BseMII	CTCAG	2 cut(s)	412, 455
BseRI	GAGGAG	4 cut(s)	19, 30, 273, 650
BseSI	GKGCMC	1 cut(s)	429
BseX3I	CGGCCG	3 cut(s)	132, 189, 431
BseXI	GCAGC	5 cut(s)	47, 50, 205, 405, 588
Bsh1236I	CGCG	3 cut(s)	131, 237, 575
Bsh1285I	CGRYCG	3 cut(s)	135, 192, 434
BshFI	GGCC	8 cut(s)	70, 134, 191, 240, 314, 382, 427, 433
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	3 cut(s)	135, 192, 434
BsiHKCI	CYCGRG	2 cut(s)	162, 509
BsiSI	CCGG	7 cut(s)	47, 60, 91, 163, 362, 430, 500
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	4 cut(s)	66, 97, 168, 628
BsmAI	GTCTC	3 cut(s)	138, 314, 474
BsmBI	CGTCTC	2 cut(s)	314, 474
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	8 cut(s)	70, 134, 191, 240, 314, 382, 427, 433
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	2 cut(s)	162, 509
Bsp120I	GGGCCC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
Bsp19I	CCATGG	1 cut(s)	116
BspANI	GGCC	8 cut(s)	70, 134, 191, 240, 314, 382, 427, 433
BspCNI	CTCAG	2 cut(s)	411, 454
BspFNI	CGCG	3 cut(s)	131, 237, 575
BspLI	GGNNCC	8 cut(s)	19, 64, 104, 178, 241, 427, 428, 494
BspPI	GGATC	5 cut(s)	57, 70, 133, 365, 675
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	224
BsrFI	RCCGGY	2 cut(s)	46, 499
BssAI	RCCGGY	2 cut(s)	46, 499
BssECI	CCNNGG	7 cut(s)	116, 149, 162, 235, 428, 488, 510
BssMI	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
BssNI	GRCGYC	2 cut(s)	44, 198
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	67, 311
Bst4CI	ACNGT	2 cut(s)	126, 409
BstACI	GRCGYC	2 cut(s)	44, 198
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	3 cut(s)	398, 441, 671
BstDSI	CCRYGG	3 cut(s)	116, 149, 235
BstF5I	GGATG	2 cut(s)	228, 637
BstFNI	CGCG	3 cut(s)	131, 237, 575
BstKTI	GATC	6 cut(s)	65, 141, 267, 373, 613, 670
BstMAI	GTCTC	3 cut(s)	138, 314, 474
BstMBI	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
BstMCI	CGRYCG	3 cut(s)	135, 192, 434
BstNI	CCWGG	2 cut(s)	67, 311
BstSCI	CCNGG	6 cut(s)	65, 161, 162, 309, 360, 428
BstSLI	GKGCMC	1 cut(s)	429
BstUI	CGCG	3 cut(s)	131, 237, 575
BstV1I	GCAGC	5 cut(s)	47, 50, 205, 405, 588
BstV2I	GAAGAC	4 cut(s)	164, 201, 534, 599
BstX2I	RGATCY	3 cut(s)	62, 138, 667
BstYI	RGATCY	3 cut(s)	62, 138, 667
BstZI	CGGCCG	3 cut(s)	132, 189, 431
BsuRI	GGCC	8 cut(s)	70, 134, 191, 240, 314, 382, 427, 433
BtgI	CCRYGG	3 cut(s)	116, 149, 235
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	228, 637
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	528
Cfr10I	RCCGGY	2 cut(s)	46, 499
Cfr13I	GGNCC	8 cut(s)	69, 88, 103, 239, 381, 425, 426, 492
Cfr42I	CCGCGG	1 cut(s)	238
Cfr9I	CCCGGG	1 cut(s)	162
CseI	GACGC	4 cut(s)	52, 206, 224, 564
Csp6I	GTAC	1 cut(s)	678
CviAII	CATG	2 cut(s)	117, 270
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	3 cut(s)	398, 441, 671
DpnI	GATC	6 cut(s)	64, 140, 266, 372, 612, 669
DpnII	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
DriI	GACNNNNNGTC	1 cut(s)	538
EaeI	YGGCCR	3 cut(s)	132, 189, 431
EagI	CGGCCG	3 cut(s)	132, 189, 431
Eam1105I	GACNNNNNGTC	1 cut(s)	538
EciI	GGCGGA	1 cut(s)	490
EclXI	CGGCCG	3 cut(s)	132, 189, 431
Eco130I	CCWWGG	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	88, 103, 492
Eco52I	CGGCCG	3 cut(s)	132, 189, 431
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	2 cut(s)	162, 509
EcoO109I	RGGNCCY	2 cut(s)	426, 492
EcoRII	CCWGG	2 cut(s)	65, 309
EcoT14I	CCWWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	116
Esp3I	CGTCTC	2 cut(s)	314, 474
FaeI	CATG	2 cut(s)	120, 273
FaiI	YATR	4 cut(s)	118, 213, 271, 688
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	116, 269
FauI	CCCGC	3 cut(s)	64, 504, 630
FblI	GTMKAC	1 cut(s)	446
FokI	GGATG	2 cut(s)	215, 644
FriOI	GRGCYC	1 cut(s)	429
HaeIII	GGCC	8 cut(s)	70, 134, 191, 240, 314, 382, 427, 433
HapII	CCGG	7 cut(s)	47, 60, 91, 163, 362, 430, 500
HgaI	GACGC	4 cut(s)	52, 206, 224, 564
Hin1I	GRCGYC	2 cut(s)	44, 198
Hin1II	CATG	2 cut(s)	120, 273
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	4 cut(s)	185, 413, 464, 533
HpaII	CCGG	7 cut(s)	47, 60, 91, 163, 362, 430, 500
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	3 cut(s)	143, 591, 695
Hpy188III	TCNNGA	4 cut(s)	262, 353, 509, 665
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	8 cut(s)	46, 413, 454, 541, 563, 580, 583, 586
HpyAV	CCTTC	2 cut(s)	190, 616
HpyCH4III	ACNGT	2 cut(s)	126, 409
HpyCH4IV	ACGT	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	398, 441, 671
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	2 cut(s)	44, 198
Hsp92II	CATG	2 cut(s)	120, 273
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
LmnI	GCTCC	2 cut(s)	17, 407
Lsp1109I	GCAGC	5 cut(s)	47, 50, 205, 405, 588
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	6 cut(s)	64, 140, 266, 372, 612, 669
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
MboII	GAAGA	5 cut(s)	166, 169, 206, 534, 604
MflI	RGATCY	3 cut(s)	62, 138, 667
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	1 cut(s)	616
MlyI	GAGTC	4 cut(s)	179, 422, 473, 527
MmeI	TCCRAC	1 cut(s)	609
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	7 cut(s)	47, 60, 91, 163, 362, 430, 500
MspR9I	CCNGG	6 cut(s)	67, 163, 164, 311, 362, 430
MvaI	CCWGG	2 cut(s)	67, 311
MvnI	CGCG	3 cut(s)	131, 237, 575
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	4 cut(s)	163, 164, 362, 430
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	120, 273
NlaIV	GGNNCC	8 cut(s)	19, 64, 104, 178, 241, 427, 428, 494
NmeAIII	GCCGAG	6 cut(s)	153, 160, 167, 451, 487, 513
PcsI	WCGNNNNNNNCGW	3 cut(s)	180, 189, 478
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	329
PleI	GAGTC	4 cut(s)	179, 421, 472, 527
PpsI	GAGTC	4 cut(s)	179, 421, 472, 527
PpuMI	RGGWCCY	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	65, 309
PspGI	CCWGG	2 cut(s)	65, 309
PspN4I	GGNNCC	8 cut(s)	19, 64, 104, 178, 241, 427, 428, 494
PspOMI	GGGCCC	1 cut(s)	425
PspPI	GGNCC	8 cut(s)	69, 88, 103, 239, 381, 425, 426, 492
PspPPI	RGGWCCY	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	528
PsuI	RGATCY	3 cut(s)	62, 138, 667
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SacII	CCGCGG	1 cut(s)	238
Sau3AI	GATC	6 cut(s)	62, 138, 264, 370, 610, 667
Sau96I	GGNCC	8 cut(s)	69, 88, 103, 239, 381, 425, 426, 492
SchI	GAGTC	4 cut(s)	179, 422, 473, 527
ScrFI	CCNGG	6 cut(s)	67, 163, 164, 311, 362, 430
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	5 cut(s)	90, 182, 330, 389, 404
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SinI	GGWCC	3 cut(s)	88, 103, 492
SmaI	CCCGGG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	616
StyD4I	CCNGG	6 cut(s)	65, 161, 162, 309, 360, 428
StyI	CCWWGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	126, 409
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	4 cut(s)	183, 369, 411, 609
TasI	AATT	1 cut(s)	616
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	5 cut(s)	35, 38, 218, 393, 601
TspMI	CCCGGG	1 cut(s)	162
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	3 cut(s)	88, 103, 492
XmaI	CCCGGG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.