Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

56949416 .. 56950981

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGGAGGGGACGCGGAGCCGCCGCCGTGGCTGCCAGAGCAAATGGACCGCCGGCCGAGCCCAACGGATCCAGACCCATTAAAGAGGTGAAGTACCGGGGCGTCAGGAAAAGGCCGTGGGGAAAATACGCGGCGGAGATCCGCGACCCGTATAAGAAGAGCCGGGTCTGGCTCGGGACCTTCGAGTCCGCCGAGGACGCGGCTCGGGCCTACGACGCCGCCGCCCGGGTCCTCCGCGGACCCAAAGCCAAGACCAATTTCCCCACCTACTCCAATCATCTCTGTTACAACAACCCCTCCGATCCCAACCTCGACAGCAAGCTGTTCGGGTCGGGTTACGGGTTCCACGACGACAGCCCGGTGGGTCCCGCGAGGCCCGCGTCGAGCAGCTTGAGCTCCACCGTCGAGTCGTTCAGCGGGCCCCGGGCGGCCCCGCAGCGATCGTCTGCAACGATCGTGGCGGAGTCGTCGCGGCGGAAACAGCCGCGGACCCCGCCGATGGATCCGGAGGATTGCCACAGCGACTGCGACTCGTCGTCGTCGGTGGTTGAGGACGACGGAGAATTCGCGTCGTCGTCGTTTCGGAAGCCGCTGGATTTTGATCTTAATTTCCCACCGTTGGATGAGGTGGACGCGGCAGGAGGGGACGGGCAAGATCTTGGGTGGACTGCTCTGTGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

227

Amino Acids

24.5

Weight (kDa)

7.66

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	31 - 80	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	6 cut(s)	63, 76, 133, 296, 497, 510
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	563
AcyI	GRCGYC	2 cut(s)	102, 216
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	225, 499, 619
AhdI	GACNNNNNGTC	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	3 cut(s)	322, 390, 396
AluI	AGCT	3 cut(s)	322, 390, 396
Alw21I	GWGCWC	1 cut(s)	398
AlwI	GGATC	6 cut(s)	63, 76, 133, 296, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	525
Ama87I	CYCGRG	4 cut(s)	173, 204, 225, 423
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	6 cut(s)	54, 113, 207, 374, 419, 429
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	32, 387, 436
ApoI	RAATTY	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	548, 580
AsuC2I	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	4 cut(s)	173, 204, 225, 423
AvaII	GGWCC	6 cut(s)	47, 177, 229, 239, 365, 489
BaeGI	GKGCMC	1 cut(s)	423
BamHI	GGATCC	2 cut(s)	68, 502
BanII	GRGCYC	3 cut(s)	63, 398, 423
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	3 cut(s)	19, 399, 448
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	2 cut(s)	11, 100
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BcnI	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
BglI	GCCNNNNNGGC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	655
Bme1390I	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
Bme18I	GGWCC	6 cut(s)	47, 177, 229, 239, 365, 489
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmeT110I	CYCGRG	4 cut(s)	173, 204, 225, 423
BmrFI	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	2 cut(s)	102, 216
BsaJI	CCNNGG	9 cut(s)	27, 97, 116, 192, 225, 235, 422, 423, 485
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 499, 619
Bse118I	RCCGGY	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	505
BseDI	CCNNGG	9 cut(s)	27, 97, 116, 192, 225, 235, 422, 423, 485
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	3 cut(s)	225, 499, 619
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	423
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	19, 399, 448
Bsh1285I	CGRYCG	3 cut(s)	57, 443, 456
BshFI	GGCC	6 cut(s)	56, 115, 209, 376, 421, 431
BsiEI	CGRYCG	3 cut(s)	57, 443, 456
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	4 cut(s)	173, 204, 225, 423
BsiSI	CCGG	7 cut(s)	53, 97, 163, 226, 359, 424, 506
BslFI	GGGAC	4 cut(s)	24, 190, 351, 659
BslI	CCNNNNNNNGG	3 cut(s)	225, 499, 619
BsmFI	GGGAC	4 cut(s)	24, 190, 351, 659
BsnI	GGCC	6 cut(s)	56, 115, 209, 376, 421, 431
BsoBI	CYCGRG	4 cut(s)	173, 204, 225, 423
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	63, 398, 423
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
BspANI	GGCC	6 cut(s)	56, 115, 209, 376, 421, 431
BspEI	TCCGGA	1 cut(s)	505
BspPI	GGATC	6 cut(s)	63, 76, 133, 296, 497, 510
BspQI	GCTCTTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	9 cut(s)	27, 97, 116, 192, 225, 235, 422, 423, 485
BssMI	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
BssNI	GRCGYC	2 cut(s)	102, 216
Bst4CI	ACNGT	2 cut(s)	403, 618
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	102, 216
BstC8I	GCNNGC	4 cut(s)	54, 320, 378, 419
BstDSI	CCRYGG	4 cut(s)	27, 116, 235, 485
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	8 cut(s)	71, 141, 304, 443, 456, 505, 604, 658
BstMBI	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
BstMCI	CGRYCG	3 cut(s)	57, 443, 456
BstSCI	CCNGG	7 cut(s)	96, 162, 224, 225, 357, 422, 423
BstSLI	GKGCMC	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	19, 399, 448
BstX2I	RGATCY	4 cut(s)	68, 138, 502, 655
BstYI	RGATCY	4 cut(s)	68, 138, 502, 655
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	6 cut(s)	56, 115, 209, 376, 421, 431
BtgI	CCRYGG	4 cut(s)	27, 116, 235, 485
BtsCI	GGATG	1 cut(s)	628
Cac8I	GCNNGC	4 cut(s)	54, 320, 378, 419
CaiI	CAGNNNCTG	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	52
Cfr42I	CCGCGG	2 cut(s)	238, 488
Cfr9I	CCCGGG	2 cut(s)	225, 423
CseI	GACGC	7 cut(s)	21, 91, 206, 224, 369, 558, 641
Csp6I	GTAC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviQI	GTAC	1 cut(s)	94
DpnI	GATC	8 cut(s)	70, 140, 303, 442, 455, 504, 603, 657
DpnII	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
DrdI	GACNNNNNNGTC	1 cut(s)	184
DriI	GACNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	54
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	4 cut(s)	149, 178, 476, 490
Ecl136II	GAGCTC	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	3 cut(s)	63, 398, 423
Eco47I	GGWCC	6 cut(s)	47, 177, 229, 239, 365, 489
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	4 cut(s)	173, 204, 225, 423
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	4 cut(s)	177, 229, 365, 420
EcoRI	GAATTC	1 cut(s)	563
EcoT38I	GRGCYC	3 cut(s)	63, 398, 423
FaiI	YATR	1 cut(s)	153
FaqI	GGGAC	4 cut(s)	24, 190, 351, 659
FauI	CCCGC	5 cut(s)	376, 385, 410, 441, 501
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	3 cut(s)	63, 398, 423
HaeIII	GGCC	6 cut(s)	56, 115, 209, 376, 421, 431
HapII	CCGG	7 cut(s)	53, 97, 163, 226, 359, 424, 506
HgaI	GACGC	7 cut(s)	21, 91, 206, 224, 369, 558, 641
Hin1I	GRCGYC	2 cut(s)	102, 216
HinfI	GANTC	4 cut(s)	185, 407, 464, 530
HpaII	CCGG	7 cut(s)	53, 97, 163, 226, 359, 424, 506
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	631, 666
Hpy188I	TCNGA	3 cut(s)	301, 585, 683
Hpy188III	TCNNGA	4 cut(s)	72, 106, 175, 506
Hpy8I	GTNNAC	2 cut(s)	631, 666
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	403, 618
HpyCH4V	TGCA	1 cut(s)	449
Hsp92I	GRCGYC	2 cut(s)	102, 216
KflI	GGGWCCC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	505
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
KspI	CCGCGG	2 cut(s)	238, 488
Kzo9I	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	17, 401
Lsp1109I	GCAGC	3 cut(s)	19, 399, 448
MaeIII	GTNAC	2 cut(s)	284, 335
MalI	GATC	8 cut(s)	70, 140, 303, 442, 455, 504, 603, 657
MboI	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	4 cut(s)	68, 138, 502, 655
MhlI	GDGCHC	3 cut(s)	63, 398, 423
MluCI	AATT	3 cut(s)	256, 563, 607
MlyI	GAGTC	4 cut(s)	194, 416, 473, 524
MmeI	TCCRAC	1 cut(s)	600
MroI	TCCGGA	1 cut(s)	505
MroNI	GCCGGC	1 cut(s)	52
MseI	TTAA	2 cut(s)	81, 606
MspA1I	CMGCKG	4 cut(s)	237, 417, 487, 592
MspI	CCGG	7 cut(s)	53, 97, 163, 226, 359, 424, 506
MspR9I	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
NaeI	GCCGGC	1 cut(s)	54
NciI	CCSGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
NdeII	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
NgoMIV	GCCGGC	1 cut(s)	52
NmeAIII	GCCGAG	2 cut(s)	82, 217
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 189, 345, 449
PdiI	GCCGGC	1 cut(s)	54
Ple19I	CGATCG	2 cut(s)	443, 456
PleI	GAGTC	4 cut(s)	193, 415, 472, 524
PpsI	GAGTC	4 cut(s)	193, 415, 472, 524
PpuMI	RGGWCCY	3 cut(s)	177, 229, 365
Psp124BI	GAGCTC	1 cut(s)	398
Psp5II	RGGWCCY	3 cut(s)	177, 229, 365
PspOMI	GGGCCC	1 cut(s)	419
PspPPI	RGGWCCY	3 cut(s)	177, 229, 365
PstNI	CAGNNNCTG	1 cut(s)	525
PsuI	RGATCY	4 cut(s)	68, 138, 502, 655
PvuI	CGATCG	2 cut(s)	443, 456
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	398
SacII	CCGCGG	2 cut(s)	238, 488
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	81, 606
Sau3AI	GATC	8 cut(s)	68, 138, 301, 440, 453, 502, 601, 655
SchI	GAGTC	4 cut(s)	194, 416, 473, 524
ScrFI	CCNGG	7 cut(s)	98, 164, 226, 227, 359, 424, 425
SduI	GDGCHC	3 cut(s)	63, 398, 423
SetI	ASST	8 cut(s)	90, 182, 269, 312, 324, 392, 398, 630
Sfr303I	CCGCGG	2 cut(s)	238, 488
SgrBI	CCGCGG	2 cut(s)	238, 488
SinI	GGWCC	6 cut(s)	47, 177, 229, 239, 365, 489
SmaI	CCCGGG	2 cut(s)	227, 425
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	256, 563, 607
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	7 cut(s)	96, 162, 224, 225, 357, 422, 423
TaaI	ACNGT	2 cut(s)	403, 618
TaqI	TCGA	4 cut(s)	183, 312, 383, 405
TasI	AATT	3 cut(s)	256, 563, 607
Tru1I	TTAA	2 cut(s)	81, 606
Tru9I	TTAA	2 cut(s)	81, 606
TseI	GCWGC	3 cut(s)	32, 387, 436
TspGWI	ACGGA	2 cut(s)	81, 573
TspMI	CCCGGG	2 cut(s)	225, 423
VpaK11BI	GGWCC	6 cut(s)	47, 177, 229, 239, 365, 489
XapI	RAATTY	1 cut(s)	563
XmaI	CCCGGG	2 cut(s)	225, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.