Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

30818765 .. 30819457

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1210700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGGAGGGGAAGAGGAGCCGCTACGAGACCCGCAGCGCCGCCGGCCGAACCCACCGGATCCAGACCCTGTATTGGAAAAGAGGTCCGGTACCGAGGGGTTCGGAAAAGACCGTGGGGCCGGTTTGCTGCCGAGATCCGTGACCCGTGGAAGAAGACCCGGGTCTGGCTCGGCACCTTCGACTCAGCTGAAGACGCCGCCCGAGCCTACGATGCCGCCGCTCGCATCCTTCGCGGCCCCAAGGCCAAGACCAACTTCCAGATCTCATGTGCTTACCCTACCTTTTACAACAACCCTACCGACCCGGCTATCGAGGCTAAGCTTTTTGGGTCGGGTTACGGGTTTCAGGACCATCCGGCTGTAGATCCGCAGAGACCCGCATCCAGCAGCCTGAGCTCCACCGTGGAGTCGTTCAGTGGGCCCCGCCCGCCGCTTCAATCGACGACGGTCGCTGCCGAGTTGACGCGGCGGAAACGACAGCCGAGGACGCCGCCCGTGGTTCCCGAGGACTGCCACAGCGACTGCGACTCGTCTTCATCGGTAGTAGAAGACGACGGGGATTTCGTCGCGTCGTCGTCGTTTCGCAAGGCCCCGCTGCCCTTCGATCTAAATTTCCCACCGTTGGATGTGGATGGGGAGATGGGCGGTGGGGTGGACGGTCAGGATCTTCGATGTACGGCTCTATGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

231

Amino Acids

25.0

Weight (kDa)

8.77

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	30 - 79	2.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	90, 173
AccBSI	CCGCTC	1 cut(s)	221
AccII	CGCG	3 cut(s)	234, 466, 569
AclWI	GGATC	5 cut(s)	54, 67, 130, 359, 672
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	2 cut(s)	195, 488
AfaI	GTAC	2 cut(s)	92, 676
AfiI	CCNNNNNNNGG	3 cut(s)	74, 165, 622
AgsI	TTSAA	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	188, 322, 396
AluI	AGCT	3 cut(s)	188, 322, 396
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	22, 367
AlwI	GGATC	5 cut(s)	54, 67, 130, 359, 672
AlwNI	CAGNNNCTG	2 cut(s)	69, 522
Ama87I	CYCGRG	3 cut(s)	159, 201, 503
AoxI	GGCC	6 cut(s)	45, 118, 235, 243, 419, 588
ApaI	GGGCCC	1 cut(s)	423
ApeKI	GCWGC	5 cut(s)	35, 128, 387, 452, 595
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	7 cut(s)	85, 118, 236, 349, 419, 420, 589
AsuC2I	CCSGG	3 cut(s)	160, 161, 305
AvaI	CYCGRG	3 cut(s)	159, 201, 503
AvaII	GGWCC	2 cut(s)	85, 349
BaeGI	GKGCMC	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	59
BanI	GGYRCC	2 cut(s)	90, 173
BanII	GRGCYC	2 cut(s)	398, 423
BbsI	GAAGAC	4 cut(s)	161, 198, 525, 555
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	5 cut(s)	47, 115, 399, 439, 582
BccI	CCATC	3 cut(s)	360, 626, 634
BcnI	CCSGG	3 cut(s)	160, 161, 305
BcoDI	GTCTC	2 cut(s)	22, 367
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	41
BglII	AGATCT	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	318
Bme1390I	CCNGG	3 cut(s)	160, 161, 305
Bme18I	GGWCC	2 cut(s)	85, 349
BmeT110I	CYCGRG	3 cut(s)	159, 201, 503
BmgT120I	GGNCC	7 cut(s)	85, 118, 236, 349, 419, 420, 589
BmrFI	CCNGG	3 cut(s)	160, 161, 305
BmsI	GCATC	3 cut(s)	202, 234, 389
BoxI	GACNNNNGTC	2 cut(s)	161, 446
BpiI	GAAGAC	4 cut(s)	161, 198, 525, 555
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuMI	CCSGG	3 cut(s)	160, 161, 305
BsaHI	GRCGYC	2 cut(s)	195, 488
BsaI	GGTCTC	2 cut(s)	22, 367
BsaJI	CCNNGG	9 cut(s)	94, 113, 146, 159, 240, 402, 482, 495, 504
BsaWI	WCCGGW	2 cut(s)	56, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 165, 622
Bse118I	RCCGGY	2 cut(s)	43, 120
BseDI	CCNNGG	9 cut(s)	94, 113, 146, 159, 240, 402, 482, 495, 504
BseGI	GGATG	5 cut(s)	225, 352, 380, 631, 637
BseLI	CCNNNNNNNGG	3 cut(s)	74, 165, 622
BseMII	CTCAG	2 cut(s)	198, 383
BseRI	GAGGAG	2 cut(s)	19, 30
BseSI	GKGCMC	1 cut(s)	423
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	5 cut(s)	47, 115, 399, 439, 582
Bsh1236I	CGCG	3 cut(s)	234, 466, 569
Bsh1285I	CGRYCG	2 cut(s)	48, 450
BshFI	GGCC	6 cut(s)	47, 120, 237, 245, 421, 590
BshNI	GGYRCC	2 cut(s)	90, 173
BsiEI	CGRYCG	2 cut(s)	48, 450
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	3 cut(s)	159, 201, 503
BsiSI	CCGG	7 cut(s)	44, 57, 88, 121, 160, 305, 356
BslI	CCNNNNNNNGG	3 cut(s)	74, 165, 622
BsmAI	GTCTC	2 cut(s)	22, 367
BsnI	GGCC	6 cut(s)	47, 120, 237, 245, 421, 590
Bso31I	GGTCTC	2 cut(s)	22, 367
BsoBI	CYCGRG	3 cut(s)	159, 201, 503
Bsp120I	GGGCCC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	398, 423
Bsp143I	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
Bsp1720I	GCTNAGC	1 cut(s)	318
BspANI	GGCC	6 cut(s)	47, 120, 237, 245, 421, 590
BspCNI	CTCAG	2 cut(s)	197, 384
BspFNI	CGCG	3 cut(s)	234, 466, 569
BspPI	GGATC	5 cut(s)	54, 67, 130, 359, 672
BspT107I	GGYRCC	2 cut(s)	90, 173
BspTNI	GGTCTC	2 cut(s)	22, 367
BsrBI	CCGCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	43, 120
BssAI	RCCGGY	2 cut(s)	43, 120
BssECI	CCNNGG	9 cut(s)	94, 113, 146, 159, 240, 402, 482, 495, 504
BssMI	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
BssNI	GRCGYC	2 cut(s)	195, 488
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	5 cut(s)	114, 403, 448, 621, 659
Bst6I	CTCTTC	1 cut(s)	7
BstACI	GRCGYC	2 cut(s)	195, 488
BstC8I	GCNNGC	3 cut(s)	45, 223, 428
BstDEI	CTNAG	3 cut(s)	184, 318, 392
BstDSI	CCRYGG	4 cut(s)	113, 146, 402, 495
BstF5I	GGATG	5 cut(s)	225, 352, 380, 631, 637
BstFNI	CGCG	3 cut(s)	234, 466, 569
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	62, 138, 264, 367, 607, 667
BstMAI	GTCTC	2 cut(s)	22, 367
BstMBI	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
BstMCI	CGRYCG	2 cut(s)	48, 450
BstMWI	GCNNNNNNNGC	9 cut(s)	44, 194, 203, 212, 231, 314, 393, 427, 487
BstPAI	GACNNNNGTC	2 cut(s)	161, 446
BstSCI	CCNGG	3 cut(s)	158, 159, 303
BstSFI	CTRYAG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	3 cut(s)	234, 466, 569
BstV1I	GCAGC	5 cut(s)	47, 115, 399, 439, 582
BstV2I	GAAGAC	4 cut(s)	161, 198, 525, 555
BstX2I	RGATCY	5 cut(s)	59, 135, 261, 364, 664
BstYI	RGATCY	5 cut(s)	59, 135, 261, 364, 664
BstZI	CGGCCG	1 cut(s)	45
BsuRI	GGCC	6 cut(s)	47, 120, 237, 245, 421, 590
BtgI	CCRYGG	4 cut(s)	113, 146, 402, 495
BtsCI	GGATG	5 cut(s)	225, 352, 380, 631, 637
BtsIMutI	CAGTG	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	45, 223, 428
CaiI	CAGNNNCTG	2 cut(s)	69, 522
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	43, 120
Cfr13I	GGNCC	7 cut(s)	85, 118, 236, 349, 419, 420, 589
Cfr9I	CCCGGG	1 cut(s)	159
CseI	GACGC	4 cut(s)	203, 472, 496, 558
Csp6I	GTAC	2 cut(s)	91, 675
CviAII	CATG	1 cut(s)	267
CviQI	GTAC	2 cut(s)	91, 675
DdeI	CTNAG	3 cut(s)	184, 318, 392
DpnI	GATC	6 cut(s)	61, 137, 263, 366, 606, 666
DpnII	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	484
Ecl136II	GAGCTC	1 cut(s)	396
EclXI	CGGCCG	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	398, 423
Eco31I	GGTCTC	2 cut(s)	22, 367
Eco47I	GGWCC	2 cut(s)	85, 349
Eco52I	CGGCCG	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	3 cut(s)	159, 201, 503
EcoICRI	GAGCTC	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	420, 589
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	398, 423
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	270
FaiI	YATR	2 cut(s)	268, 685
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	1 cut(s)	266
FauI	CCCGC	5 cut(s)	40, 385, 431, 435, 600
FokI	GGATG	5 cut(s)	212, 339, 367, 638, 644
FriOI	GRGCYC	2 cut(s)	398, 423
GlaI	GCGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	6 cut(s)	47, 120, 237, 245, 421, 590
HapII	CCGG	7 cut(s)	44, 57, 88, 121, 160, 305, 356
HgaI	GACGC	4 cut(s)	203, 472, 496, 558
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	195, 488
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	3 cut(s)	182, 407, 527
HpaII	CCGG	7 cut(s)	44, 57, 88, 121, 160, 305, 356
Hpy166II	GTNNAC	2 cut(s)	462, 655
Hpy188I	TCNGA	2 cut(s)	105, 692
Hpy188III	TCNNGA	5 cut(s)	63, 259, 347, 503, 662
Hpy8I	GTNNAC	2 cut(s)	462, 655
Hpy99I	CGWCG	7 cut(s)	445, 448, 557, 569, 574, 577, 580
HpyAV	CCTTC	3 cut(s)	187, 239, 610
HpyCH4III	ACNGT	5 cut(s)	114, 403, 448, 621, 659
HpyF10VI	GCNNNNNNNGC	9 cut(s)	44, 194, 203, 212, 231, 314, 393, 427, 487
HpyF3I	CTNAG	3 cut(s)	184, 318, 392
Hsp92I	GRCGYC	2 cut(s)	195, 488
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
LmnI	GCTCC	2 cut(s)	17, 401
Lsp1109I	GCAGC	5 cut(s)	47, 115, 399, 439, 582
LweI	GCATC	3 cut(s)	202, 234, 389
MaeIII	GTNAC	2 cut(s)	140, 335
MalI	GATC	6 cut(s)	61, 137, 263, 366, 606, 666
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
MboII	GAAGA	7 cut(s)	24, 163, 166, 203, 525, 560, 659
MflI	RGATCY	5 cut(s)	59, 135, 261, 364, 664
MhlI	GDGCHC	2 cut(s)	398, 423
MluCI	AATT	1 cut(s)	610
MlyI	GAGTC	3 cut(s)	176, 416, 521
MmeI	TCCRAC	1 cut(s)	603
MnlI	CCTC	6 cut(s)	8, 76, 89, 307, 477, 499
MroNI	GCCGGC	1 cut(s)	43
MspA1I	CMGCKG	2 cut(s)	188, 595
MspI	CCGG	7 cut(s)	44, 57, 88, 121, 160, 305, 356
MspR9I	CCNGG	3 cut(s)	160, 161, 305
MvnI	CGCG	3 cut(s)	234, 466, 569
MwoI	GCNNNNNNNGC	9 cut(s)	44, 194, 203, 212, 231, 314, 393, 427, 487
NaeI	GCCGGC	1 cut(s)	45
NciI	CCSGG	3 cut(s)	160, 161, 305
NdeII	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	270
NmeAIII	GCCGAG	4 cut(s)	150, 157, 481, 507
NmuCI	GTSAC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 561
PdiI	GCCGGC	1 cut(s)	45
PleI	GAGTC	3 cut(s)	176, 415, 521
PpsI	GAGTC	3 cut(s)	176, 415, 521
PshAI	GACNNNNGTC	2 cut(s)	161, 446
Psp124BI	GAGCTC	1 cut(s)	398
PspOMI	GGGCCC	1 cut(s)	419
PspPI	GGNCC	7 cut(s)	85, 118, 236, 349, 419, 420, 589
PstNI	CAGNNNCTG	2 cut(s)	69, 522
PsuI	RGATCY	5 cut(s)	59, 135, 261, 364, 664
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	92, 676
RsaNI	GTAC	2 cut(s)	91, 675
SacI	GAGCTC	1 cut(s)	398
Sau3AI	GATC	6 cut(s)	59, 135, 261, 364, 604, 664
Sau96I	GGNCC	7 cut(s)	85, 118, 236, 349, 419, 420, 589
SchI	GAGTC	3 cut(s)	176, 416, 521
ScrFI	CCNGG	3 cut(s)	160, 161, 305
SduI	GDGCHC	2 cut(s)	398, 423
SetI	ASST	6 cut(s)	87, 179, 190, 284, 324, 398
SfaNI	GCATC	3 cut(s)	202, 234, 389
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	85, 349
SmaI	CCCGGG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	610
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	158, 159, 303
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	5 cut(s)	114, 403, 448, 621, 659
TaqI	TCGA	5 cut(s)	180, 312, 440, 603, 670
TasI	AATT	1 cut(s)	610
TauI	GCSGC	9 cut(s)	23, 43, 200, 218, 221, 237, 433, 469, 493
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	5 cut(s)	35, 128, 387, 452, 595
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	128
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	85, 349
XapI	RAATTY	1 cut(s)	610
XmaI	CCCGGG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.