Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

26651109 .. 26651798

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1194300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGGAGGGGCAGAGGAGCAGCCACGAGAGCCGCAGCGCCGCCGGCCGAACCCACCGGATCCAGACGCAGTATTGGCAAAGAGGTCCGGTACCGAGGGGTGCGGAGAAGACCGTGGGGTCGGTTTGCAGCCGAGATCCGGGACCCGTGGAAGAAGACCCGGGTTTGGCTCGGCACCTTCGACTCGGCCGAAGACGCCGCCCGAGCTTACGATGCCGCCGCTCGGATCCTCCGCGGCCCCAAGGCCAAGACTAACTTCCCGATCTCATGTGCTTACCCGCCCTTTTACAACAACCCTACCGACACTATCGAGGCAAAGCTTTTCGGGTCGGGTTACGGATTTCAGGACAATCCGGTTGTAGATCCTCAGAGACCCGCATCCAGCAGCCTGAGCTCCACCGTGGAGTCGTTCAGTGGGCCCCGGCCGCCGCCTCAATTTACGACGATGGCTGCCGAGTTGTCGCGGCCTAAACGACAGCCGAGGACCCCGCCGGTGGTTCCCGAGGACTGCCACAGCGACTGCGACTCGTCGTCATCGGTGGTTGAGGACGACGGGGATTTCGTTGCGTCGTCGTCGTTTCGCAAGGCCCCGCTGCCCTTCGATCTTAATTTCCCACCGTTGGATGTGGATGGGGATTTGGGCGGTGGGGTGGACGGTCATGATCTTCGATGTACGGCTCTATGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

24.93

Weight (kDa)

8.86

Isoelectric Point (pI)

66.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	30 - 79	8.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	117
Acc65I	GGTACC	1 cut(s)	90
AccB1I	GGYRCC	2 cut(s)	90, 173
AccBSI	CCGCTC	1 cut(s)	221
AccII	CGCG	2 cut(s)	234, 463
AclWI	GGATC	6 cut(s)	54, 67, 130, 220, 233, 356
AcoI	YGGCCR	3 cut(s)	45, 186, 422
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	92, 673
AfiI	CCNNNNNNNGG	5 cut(s)	138, 165, 222, 493, 619
AhdI	GACNNNNNGTC	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	3 cut(s)	206, 319, 393
AluI	AGCT	3 cut(s)	206, 319, 393
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	6 cut(s)	54, 67, 130, 220, 233, 356
AlwNI	CAGNNNCTG	1 cut(s)	519
Ama87I	CYCGRG	3 cut(s)	159, 201, 500
AoxI	GGCC	8 cut(s)	45, 186, 235, 243, 416, 422, 464, 585
ApaI	GGGCCC	1 cut(s)	420
ApeKI	GCWGC	6 cut(s)	20, 35, 128, 384, 449, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp718I	GGTACC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	7 cut(s)	85, 142, 236, 416, 417, 483, 586
AsuC2I	CCSGG	4 cut(s)	140, 160, 161, 421
AvaI	CYCGRG	3 cut(s)	159, 201, 500
AvaII	GGWCC	3 cut(s)	85, 142, 483
BaeGI	GKGCMC	1 cut(s)	420
BamHI	GGATCC	2 cut(s)	59, 225
BanI	GGYRCC	2 cut(s)	90, 173
BanII	GRGCYC	2 cut(s)	395, 420
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	3 cut(s)	115, 161, 198
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	6 cut(s)	32, 47, 140, 396, 436, 579
BccI	CCATC	2 cut(s)	439, 623
BcnI	CCSGG	4 cut(s)	140, 160, 161, 421
BcoDI	GTCTC	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	41
Bme1390I	CCNGG	4 cut(s)	140, 160, 161, 421
Bme18I	GGWCC	3 cut(s)	85, 142, 483
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmeT110I	CYCGRG	3 cut(s)	159, 201, 500
BmgT120I	GGNCC	7 cut(s)	85, 142, 236, 416, 417, 483, 586
BmrFI	CCNGG	4 cut(s)	140, 160, 161, 421
BmsI	GCATC	2 cut(s)	202, 386
BpiI	GAAGAC	3 cut(s)	115, 161, 198
Bpu10I	CCTNAGC	1 cut(s)	389
BpuMI	CCSGG	4 cut(s)	140, 160, 161, 421
BsaHI	GRCGYC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	364
BsaWI	WCCGGW	3 cut(s)	56, 87, 352
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 165, 222, 493, 619
Bse118I	RCCGGY	2 cut(s)	43, 490
BseGI	GGATG	3 cut(s)	377, 628, 634
BseLI	CCNNNNNNNGG	5 cut(s)	138, 165, 222, 493, 619
BseMII	CTCAG	2 cut(s)	380, 380
BseRI	GAGGAG	2 cut(s)	19, 30
BseSI	GKGCMC	1 cut(s)	420
BseX3I	CGGCCG	3 cut(s)	45, 186, 422
BseXI	GCAGC	6 cut(s)	32, 47, 140, 396, 436, 579
Bsh1236I	CGCG	2 cut(s)	234, 463
Bsh1285I	CGRYCG	3 cut(s)	48, 189, 425
BshFI	GGCC	8 cut(s)	47, 188, 237, 245, 418, 424, 466, 587
BshNI	GGYRCC	2 cut(s)	90, 173
BsiEI	CGRYCG	3 cut(s)	48, 189, 425
BsiHKAI	GWGCWC	1 cut(s)	395
BsiHKCI	CYCGRG	3 cut(s)	159, 201, 500
BsiSI	CCGG	8 cut(s)	44, 57, 88, 139, 160, 353, 421, 491
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	5 cut(s)	138, 165, 222, 493, 619
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	8 cut(s)	47, 188, 237, 245, 418, 424, 466, 587
Bso31I	GGTCTC	1 cut(s)	364
BsoBI	CYCGRG	3 cut(s)	159, 201, 500
Bsp120I	GGGCCC	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	395, 420
Bsp143I	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
BspANI	GGCC	8 cut(s)	47, 188, 237, 245, 418, 424, 466, 587
BspCNI	CTCAG	2 cut(s)	379, 381
BspFNI	CGCG	2 cut(s)	234, 463
BspHI	TCATGA	1 cut(s)	658
BspPI	GGATC	6 cut(s)	54, 67, 130, 220, 233, 356
BspT107I	GGYRCC	2 cut(s)	90, 173
BspTNI	GGTCTC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	43, 490
BssAI	RCCGGY	2 cut(s)	43, 490
BssMI	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
BssNI	GRCGYC	1 cut(s)	195
BssSI	CACGAG	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	25
Bst4CI	ACNGT	4 cut(s)	114, 400, 618, 656
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	366, 389
BstDSI	CCRYGG	4 cut(s)	113, 146, 232, 399
BstF5I	GGATG	3 cut(s)	377, 628, 634
BstFNI	CGCG	2 cut(s)	234, 463
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	7 cut(s)	62, 138, 228, 264, 364, 604, 664
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
BstMCI	CGRYCG	3 cut(s)	48, 189, 425
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 44, 75, 194, 203, 212, 390, 424
BstSCI	CCNGG	4 cut(s)	138, 158, 159, 419
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	2 cut(s)	234, 463
BstV1I	GCAGC	6 cut(s)	32, 47, 140, 396, 436, 579
BstV2I	GAAGAC	3 cut(s)	115, 161, 198
BstX2I	RGATCY	4 cut(s)	59, 135, 225, 361
BstYI	RGATCY	4 cut(s)	59, 135, 225, 361
BstZI	CGGCCG	3 cut(s)	45, 186, 422
BsuRI	GGCC	8 cut(s)	47, 188, 237, 245, 418, 424, 466, 587
BtgI	CCRYGG	4 cut(s)	113, 146, 232, 399
BtsCI	GGATG	3 cut(s)	377, 628, 634
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	519
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	43, 490
Cfr13I	GGNCC	7 cut(s)	85, 142, 236, 416, 417, 483, 586
Cfr42I	CCGCGG	1 cut(s)	235
Cfr9I	CCCGGG	1 cut(s)	159
CseI	GACGC	3 cut(s)	75, 203, 555
Csp6I	GTAC	2 cut(s)	91, 672
CviAII	CATG	2 cut(s)	267, 659
CviQI	GTAC	2 cut(s)	91, 672
DdeI	CTNAG	2 cut(s)	366, 389
DpnI	GATC	7 cut(s)	61, 137, 227, 263, 363, 603, 663
DpnII	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
DrdI	GACNNNNNNGTC	1 cut(s)	117
DriI	GACNNNNNGTC	1 cut(s)	529
DseDI	GACNNNNNNGTC	1 cut(s)	117
EaeI	YGGCCR	3 cut(s)	45, 186, 422
EagI	CGGCCG	3 cut(s)	45, 186, 422
Eam1105I	GACNNNNNGTC	1 cut(s)	529
Ecl136II	GAGCTC	1 cut(s)	393
EclXI	CGGCCG	3 cut(s)	45, 186, 422
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	395, 420
Eco31I	GGTCTC	1 cut(s)	364
Eco47I	GGWCC	3 cut(s)	85, 142, 483
Eco52I	CGGCCG	3 cut(s)	45, 186, 422
Eco53kI	GAGCTC	1 cut(s)	393
Eco88I	CYCGRG	3 cut(s)	159, 201, 500
EcoICRI	GAGCTC	1 cut(s)	393
EcoO109I	RGGNCCY	4 cut(s)	142, 417, 483, 586
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	395, 420
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	270, 662
FaiI	YATR	3 cut(s)	268, 660, 682
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	266, 658
FauI	CCCGC	4 cut(s)	285, 382, 495, 597
FokI	GGATG	3 cut(s)	364, 635, 641
FriOI	GRGCYC	2 cut(s)	395, 420
GlaI	GCGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	8 cut(s)	47, 188, 237, 245, 418, 424, 466, 587
HapII	CCGG	8 cut(s)	44, 57, 88, 139, 160, 353, 421, 491
HgaI	GACGC	3 cut(s)	75, 203, 555
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	270, 662
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	3 cut(s)	182, 404, 524
HpaII	CCGG	8 cut(s)	44, 57, 88, 139, 160, 353, 421, 491
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	2 cut(s)	225, 369
Hpy188III	TCNNGA	5 cut(s)	63, 259, 344, 500, 659
Hpy8I	GTNNAC	1 cut(s)	652
Hpy99I	CGWCG	6 cut(s)	445, 532, 554, 571, 574, 577
HpyAV	CCTTC	2 cut(s)	187, 607
HpyCH4III	ACNGT	4 cut(s)	114, 400, 618, 656
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 44, 75, 194, 203, 212, 390, 424
HpyF3I	CTNAG	2 cut(s)	366, 389
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	270, 662
HspAI	GCGC	1 cut(s)	38
KflI	GGGWCCC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
LmnI	GCTCC	2 cut(s)	17, 398
Lsp1109I	GCAGC	6 cut(s)	32, 47, 140, 396, 436, 579
LweI	GCATC	2 cut(s)	202, 386
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	7 cut(s)	61, 137, 227, 263, 363, 603, 663
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
MboII	GAAGA	5 cut(s)	120, 163, 166, 203, 656
MflI	RGATCY	4 cut(s)	59, 135, 225, 361
MhlI	GDGCHC	2 cut(s)	395, 420
MluCI	AATT	2 cut(s)	434, 607
MlyI	GAGTC	3 cut(s)	176, 413, 518
MmeI	TCCRAC	1 cut(s)	600
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	606
MspA1I	CMGCKG	2 cut(s)	234, 592
MspI	CCGG	8 cut(s)	44, 57, 88, 139, 160, 353, 421, 491
MspR9I	CCNGG	4 cut(s)	140, 160, 161, 421
MvnI	CGCG	2 cut(s)	234, 463
MwoI	GCNNNNNNNGC	8 cut(s)	29, 44, 75, 194, 203, 212, 390, 424
NaeI	GCCGGC	1 cut(s)	45
NciI	CCSGG	4 cut(s)	140, 160, 161, 421
NdeII	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	270, 662
NmeAIII	GCCGAG	5 cut(s)	150, 157, 164, 478, 504
PagI	TCATGA	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 186, 558
PdiI	GCCGGC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	138
PleI	GAGTC	3 cut(s)	176, 412, 518
PpsI	GAGTC	3 cut(s)	176, 412, 518
PpuMI	RGGWCCY	2 cut(s)	142, 483
Psp124BI	GAGCTC	1 cut(s)	395
Psp5II	RGGWCCY	2 cut(s)	142, 483
PspOMI	GGGCCC	1 cut(s)	416
PspPI	GGNCC	7 cut(s)	85, 142, 236, 416, 417, 483, 586
PspPPI	RGGWCCY	2 cut(s)	142, 483
PstNI	CAGNNNCTG	1 cut(s)	519
PsuI	RGATCY	4 cut(s)	59, 135, 225, 361
RsaI	GTAC	2 cut(s)	92, 673
RsaNI	GTAC	2 cut(s)	91, 672
SacI	GAGCTC	1 cut(s)	395
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	7 cut(s)	59, 135, 225, 261, 361, 601, 661
Sau96I	GGNCC	7 cut(s)	85, 142, 236, 416, 417, 483, 586
SchI	GAGTC	3 cut(s)	176, 413, 518
ScrFI	CCNGG	4 cut(s)	140, 160, 161, 421
SduI	GDGCHC	2 cut(s)	395, 420
SetI	ASST	5 cut(s)	87, 179, 208, 321, 395
SfaNI	GCATC	2 cut(s)	202, 386
Sfr303I	CCGCGG	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	490
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	3 cut(s)	85, 142, 483
SmaI	CCCGGG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	434, 607
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	4 cut(s)	138, 158, 159, 419
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	114, 400, 618, 656
TaqI	TCGA	4 cut(s)	180, 309, 600, 667
TasI	AATT	2 cut(s)	434, 607
TauI	GCSGC	9 cut(s)	35, 43, 200, 218, 221, 237, 427, 430, 466
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	6 cut(s)	20, 35, 128, 384, 449, 592
TspGWI	ACGGA	1 cut(s)	351
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	3 cut(s)	85, 142, 483
XmaI	CCCGGG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.