FvH4_6g42000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004659
Physical Location & Seq
Reverse (-)
32869294 .. 32869977
684 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42000.t1

Sequence Viewer

Length: 684 bp
ATGCGGCGAGCAAGAGCCACCGCTGGACCCGCCAACCAATCCCCACCATCATGCAAGAAGCCTCGGGCGGCCGCCGCCCCGAGAGCCACGCCGTCGTCGCAGCAACAACAACAACCGCAGATCAGATTCCGAGGCGTGCGGAAGCGGCCGTGGGGCCGATTCGCCGCCGAGATCAGAGACCCGTGGAAGAAGACGCGTGTTTGGCTCGGGACGTTTGATTCCGCCGAGGACGCCGCCAGAGCATATGATGCCGCCGCCCGATCTTTACGGGGGCCGAAGGCCAAGACTAACTTCTCCCTGCCGTGCGATCCTTTCTACGGCGGCGAGTTCAACGACGACGCGATTTGCTCCAAGATCGATGTGATTCAGGCCAGCCGGCCGACCTCCAGCAGCCTCAGCAGCACCGTCGAGTCCTTCAGCGGGCCGAGGGTCAACTCCGGCAAGCCTCCGCCGATGAAGCCGACGCAGCGGAGACCGGTGTATCCTGTTTCGCCTGAGGACTGCCACAGCGATTGCGACTCCTCTTCCTCCGTCGTCGACGATGGTGATGATTGCGTTCTCACGTCGTCGTTCCGGAGAGTCCTGCCCTTCGATCTCAACATGCCGCCGCCGATGGATGGTTTTGATTTTTCCAGCGACAACGTGGATGATGACGATCTTCGAGCCACCGCCCTCTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

228

Amino Acids

24.86

Weight (kDa)

8.71

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 42 - 91 6.1e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 537
AccII CGCG 2 cut(s) 196, 341
AccIII TCCGGA 1 cut(s) 573
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 3 cut(s) 69, 146, 377
AcuI CTGAAG 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 231
AfiI CCNNNNNNNGG 3 cut(s) 317, 420, 617
AflIII ACRYGT 1 cut(s) 194
AgeI ACCGGT 1 cut(s) 475
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
Alw26I GTCTC 2 cut(s) 171, 466
AlwI GGATC 1 cut(s) 302
Ama87I CYCGRG 3 cut(s) 63, 79, 206
Aor13HI TCCGGA 1 cut(s) 573
AoxI GGCC 8 cut(s) 69, 146, 154, 272, 279, 369, 377, 422
ApeKI GCWGC 4 cut(s) 100, 390, 399, 466
AsiGI ACCGGT 1 cut(s) 475
AspS9I GGNCC 4 cut(s) 26, 154, 272, 422
AsuHPI GGTGA 1 cut(s) 557
AvaI CYCGRG 3 cut(s) 63, 79, 206
AvaII GGWCC 1 cut(s) 26
AxyI CCTNAGG 1 cut(s) 495
BaeI ACNNNNGTAYC 2 cut(s) 464, 497
BbsI GAAGAC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 4 cut(s) 112, 402, 411, 478
BccI CCATC 4 cut(s) 55, 536, 607, 611
BceAI ACGGC 4 cut(s) 76, 133, 286, 334
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciVI GTATCC 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 171, 466
BfuI GTATCC 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 3 cut(s) 63, 79, 206
BmgBI CACGTC 1 cut(s) 564
BmgT120I GGNCC 4 cut(s) 26, 154, 272, 422
BmiI GGNNCC 3 cut(s) 28, 155, 273
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 370
Bpu10I CCTNAGC 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 171, 466
BsaJI CCNNGG 6 cut(s) 62, 130, 149, 182, 225, 425
BsaWI WCCGGW 2 cut(s) 475, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 420, 617
Bse118I RCCGGY 2 cut(s) 375, 475
Bse21I CCTNAGG 1 cut(s) 495
Bse8I GATNNNNATC 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 573
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 6 cut(s) 62, 130, 149, 182, 225, 425
BseGI GGATG 2 cut(s) 622, 652
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 3 cut(s) 317, 420, 617
BseMII CTCAG 2 cut(s) 409, 486
BseRI GAGGAG 1 cut(s) 511
BseX3I CGGCCG 3 cut(s) 69, 146, 377
BseXI GCAGC 4 cut(s) 112, 402, 411, 478
Bsh1236I CGCG 2 cut(s) 196, 341
Bsh1285I CGRYCG 3 cut(s) 72, 149, 380
BshFI GGCC 8 cut(s) 71, 148, 156, 274, 281, 371, 379, 424
BshTI ACCGGT 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 3 cut(s) 72, 149, 380
BsiHKCI CYCGRG 3 cut(s) 63, 79, 206
BsiSI CCGG 4 cut(s) 376, 438, 476, 574
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 3 cut(s) 317, 420, 617
BsmAI GTCTC 2 cut(s) 171, 466
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 8 cut(s) 71, 148, 156, 274, 281, 371, 379, 424
Bso31I GGTCTC 2 cut(s) 171, 466
BsoBI CYCGRG 3 cut(s) 63, 79, 206
Bsp13I TCCGGA 1 cut(s) 573
Bsp143I GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
BspANI GGCC 8 cut(s) 71, 148, 156, 274, 281, 371, 379, 424
BspCNI CTCAG 2 cut(s) 408, 487
BspDI ATCGAT 1 cut(s) 357
BspEI TCCGGA 1 cut(s) 573
BspFNI CGCG 2 cut(s) 196, 341
BspLI GGNNCC 3 cut(s) 28, 155, 273
BspPI GGATC 1 cut(s) 302
BspTNI GGTCTC 2 cut(s) 171, 466
BsrFI RCCGGY 2 cut(s) 375, 475
BssAI RCCGGY 2 cut(s) 375, 475
BssECI CCNNGG 6 cut(s) 62, 130, 149, 182, 225, 425
BssMI GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 1 cut(s) 529
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 6 cut(s) 9, 137, 373, 377, 422, 443
BstDEI CTNAG 2 cut(s) 395, 495
BstDSI CCRYGG 2 cut(s) 149, 182
BstF5I GGATG 2 cut(s) 622, 652
BstFNI CGCG 2 cut(s) 196, 341
BstKTI GATC 7 cut(s) 123, 174, 263, 310, 357, 595, 658
BstMAI GTCTC 2 cut(s) 171, 466
BstMBI GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
BstMCI CGRYCG 3 cut(s) 72, 149, 380
BstNSI RCATGY 1 cut(s) 604
BstUI CGCG 2 cut(s) 196, 341
BstV1I GCAGC 4 cut(s) 112, 402, 411, 478
BstV2I GAAGAC 1 cut(s) 197
BstZI CGGCCG 3 cut(s) 69, 146, 377
Bsu15I ATCGAT 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 495
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 8 cut(s) 71, 148, 156, 274, 281, 371, 379, 424
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 2 cut(s) 149, 182
BtrI CACGTC 1 cut(s) 564
BtsCI GGATG 2 cut(s) 622, 652
Cac8I GCNNGC 6 cut(s) 9, 137, 373, 377, 422, 443
CciNI GCGGCCGC 1 cut(s) 69
Cfr10I RCCGGY 2 cut(s) 375, 475
Cfr13I GGNCC 4 cut(s) 26, 154, 272, 422
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 4 cut(s) 202, 239, 347, 472
CspAI ACCGGT 1 cut(s) 475
CspCI CAANNNNNGTGG 2 cut(s) 494, 529
CviAII CATG 2 cut(s) 51, 601
DdeI CTNAG 2 cut(s) 395, 495
DpnI GATC 7 cut(s) 122, 173, 262, 309, 356, 594, 657
DpnII GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
EaeI YGGCCR 3 cut(s) 69, 146, 377
EagI CGGCCG 3 cut(s) 69, 146, 377
Eam1104I CTCTTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 529
EciI GGCGGA 2 cut(s) 211, 438
EclXI CGGCCG 3 cut(s) 69, 146, 377
Eco31I GGTCTC 2 cut(s) 171, 466
Eco47I GGWCC 1 cut(s) 26
Eco52I CGGCCG 3 cut(s) 69, 146, 377
Eco57I CTGAAG 1 cut(s) 400
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 3 cut(s) 63, 79, 206
FaeI CATG 2 cut(s) 54, 604
FaiI YATR 4 cut(s) 52, 244, 246, 602
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 50, 600
FauI CCCGC 2 cut(s) 37, 413
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 537
FokI GGATG 2 cut(s) 629, 659
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 8 cut(s) 71, 148, 156, 274, 281, 371, 379, 424
HapII CCGG 4 cut(s) 376, 438, 476, 574
HgaI GACGC 4 cut(s) 202, 239, 347, 472
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 2 cut(s) 54, 604
HincII GTYRAC 2 cut(s) 433, 538
HindII GTYRAC 2 cut(s) 433, 538
HinfI GANTC 7 cut(s) 126, 159, 218, 364, 410, 518, 579
HpaII CCGG 4 cut(s) 376, 438, 476, 574
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 2 cut(s) 433, 538
Hpy188I TCNGA 4 cut(s) 125, 131, 176, 683
Hpy188III TCNNGA 2 cut(s) 208, 574
Hpy8I GTNNAC 2 cut(s) 433, 538
HpyAV CCTTC 3 cut(s) 271, 424, 598
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 3 cut(s) 212, 563, 642
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 395, 495
HpySE526I ACGT 3 cut(s) 212, 563, 642
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 2 cut(s) 54, 604
Kpn2I TCCGGA 1 cut(s) 573
KroI GCCGGC 1 cut(s) 375
KroNI GCCGGC 1 cut(s) 377
Kzo9I GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 4 cut(s) 112, 402, 411, 478
LweI GCATC 1 cut(s) 238
MaeII ACGT 3 cut(s) 212, 563, 642
MalI GATC 7 cut(s) 122, 173, 262, 309, 356, 594, 657
MboI GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
MboII GAAGA 4 cut(s) 199, 202, 516, 650
MluI ACGCGT 1 cut(s) 194
MlyI GAGTC 3 cut(s) 419, 512, 588
MroI TCCGGA 1 cut(s) 573
MroNI GCCGGC 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 49
MspA1I CMGCKG 3 cut(s) 23, 420, 469
MspI CCGG 4 cut(s) 376, 438, 476, 574
MvnI CGCG 2 cut(s) 196, 341
NaeI GCCGGC 1 cut(s) 377
NdeI CATATG 1 cut(s) 244
NdeII GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
NgoMIV GCCGGC 1 cut(s) 375
NlaIII CATG 2 cut(s) 54, 604
NlaIV GGNNCC 3 cut(s) 28, 155, 273
NmeAIII GCCGAG 3 cut(s) 193, 250, 450
NotI GCGGCCGC 1 cut(s) 69
NspI RCATGY 1 cut(s) 604
PdiI GCCGGC 1 cut(s) 377
PfeI GAWTC 4 cut(s) 126, 159, 218, 364
PinAI ACCGGT 1 cut(s) 475
PleI GAGTC 3 cut(s) 418, 512, 587
PpsI GAGTC 3 cut(s) 418, 512, 587
PspN4I GGNNCC 3 cut(s) 28, 155, 273
PspPI GGNCC 4 cut(s) 26, 154, 272, 422
RseI CAYNNNNRTG 1 cut(s) 49
SalI GTCGAC 1 cut(s) 536
Sau3AI GATC 7 cut(s) 120, 171, 260, 307, 354, 592, 655
Sau96I GGNCC 4 cut(s) 26, 154, 272, 422
SchI GAGTC 3 cut(s) 419, 512, 588
SetI ASST 4 cut(s) 215, 386, 566, 645
SfaNI GCATC 1 cut(s) 238
SgrDI CGTCGACG 1 cut(s) 536
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 3 cut(s) 215, 566, 645
TaqI TCGA 5 cut(s) 357, 408, 537, 591, 661
TfiI GAWTC 4 cut(s) 126, 159, 218, 364
TseI GCWGC 4 cut(s) 100, 390, 399, 466
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 26
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.