Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

18756972 .. 18758708

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGGAGAGGAAGAGGCTCTTCCGCCGTCGCCGGACCTACCGTCGTTGCCGCCATCAACGGATCTGTAAAAGAAATCAGATTCAGAGGCGTAAGGAAGAGACCTTGGGGACGATTCGCAGCTGAGATCCGTGATCCATGGAAAAAAGCTCGTGTTTGGTTAGGTACTTTCGATTCCGCCGAAGAAGCTGCTCGCGCTTACGACTCCGCCGCTCGTAACCTCCGTGGTCCTAAAGCCAAAACTAATTTCCCCATCGATTCTTCTTCTCCTCCTCCTCCTAATCTCCGATTTAATCAGATTCGTAATCAAAATCAAAACCAAGTCGATCCGTTTATGGACCACCGGTTATTCACCGACCATCAACAACAGTTCCCGATTGTTAACCGGCCTACTAGTAGCAGCATGAGCAGCACCGTTGAATCGTTTAGCGGACCCAGACCTACGACGATGAAACCGGCCACGACGAAGAGATATCCTAGAACTCCACCGGTTGTTCCGGAGGATTGTCACAGCGATTGCGATTCGTCGTCGTCTGTAATCGACGACGACGACGATATCGCATCGTCTTCACGGCGACGGAATCCGCCGTTTCAATTCGATCTTAATTTTCCACCGTTGGATTGTGTTGACTTGTTCAATGGCGCTGATGATCTTCACTGTACCGATCTACGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

225

Amino Acids

25.22

Weight (kDa)

9.23

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	27 - 76	1.6e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	7 cut(s)	24, 51, 177, 207, 210, 429, 584
AclWI	GGATC	4 cut(s)	70, 121, 128, 320
AcoI	YGGCCR	1 cut(s)	456
AfaI	GTAC	2 cut(s)	166, 661
AgeI	ACCGGT	2 cut(s)	342, 487
AgsI	TTSAA	3 cut(s)	419, 593, 637
AhdI	GACNNNNNGTC	1 cut(s)	41
AhlI	ACTAGT	1 cut(s)	392
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	3 cut(s)	122, 149, 188
AluI	AGCT	3 cut(s)	122, 149, 188
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	4 cut(s)	70, 121, 128, 320
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	2 cut(s)	386, 456
ApeKI	GCWGC	4 cut(s)	119, 188, 399, 408
AsiGI	ACCGGT	2 cut(s)	342, 487
AspLEI	GCGC	2 cut(s)	197, 644
AspS9I	GGNCC	4 cut(s)	35, 227, 337, 431
AsuHPI	GGTGA	1 cut(s)	343
AvaII	GGWCC	4 cut(s)	35, 227, 337, 431
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	558
BbvI	GCAGC	4 cut(s)	131, 175, 411, 420
BccI	CCATC	3 cut(s)	62, 260, 366
BceAI	ACGGC	3 cut(s)	11, 571, 587
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BcoDI	GTCTC	1 cut(s)	94
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	2 cut(s)	393, 477
BfoI	RGCGCY	1 cut(s)	645
BisI	GCNGC	6 cut(s)	51, 120, 189, 210, 400, 409
BlsI	GCNGC	6 cut(s)	52, 121, 190, 211, 401, 410
Bme18I	GGWCC	4 cut(s)	35, 227, 337, 431
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmgT120I	GGNCC	4 cut(s)	35, 227, 337, 431
BmiI	GGNNCC	1 cut(s)	433
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	104, 137, 223
BsaWI	WCCGGW	3 cut(s)	342, 487, 496
Bse118I	RCCGGY	4 cut(s)	342, 384, 454, 487
BseAI	TCCGGA	1 cut(s)	496
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	104, 137, 223
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	4 cut(s)	19, 258, 261, 264
BseXI	GCAGC	4 cut(s)	131, 175, 411, 420
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	388, 458
BshTI	ACCGGT	2 cut(s)	342, 487
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	6 cut(s)	33, 343, 385, 455, 488, 497
BslFI	GGGAC	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	388, 458
Bso31I	GGTCTC	1 cut(s)	94
Bsp13I	TCCGGA	1 cut(s)	496
Bsp143I	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	7 cut(s)	24, 51, 177, 207, 210, 429, 584
BspANI	GGCC	2 cut(s)	388, 458
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	4 cut(s)	70, 121, 128, 320
BspQI	GCTCTTC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	212
BsrFI	RCCGGY	4 cut(s)	342, 384, 454, 487
BssAI	RCCGGY	4 cut(s)	342, 384, 454, 487
BssECI	CCNNGG	3 cut(s)	104, 137, 223
BssMI	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	104, 137
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	5 cut(s)	43, 369, 415, 615, 659
Bst6I	CTCTTC	4 cut(s)	7, 25, 92, 461
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	2 cut(s)	137, 223
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	197, 644
BstKTI	GATC	7 cut(s)	65, 129, 136, 328, 601, 652, 667
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 194, 405, 408
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	131, 175, 411, 420
BstV2I	GAAGAC	1 cut(s)	558
BstX2I	RGATCY	2 cut(s)	62, 126
BstYI	RGATCY	2 cut(s)	62, 126
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	388, 458
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	137, 223
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	197, 644
Cfr10I	RCCGGY	4 cut(s)	342, 384, 454, 487
Cfr13I	GGNCC	4 cut(s)	35, 227, 337, 431
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	165, 660
CspAI	ACCGGT	2 cut(s)	342, 487
CviAII	CATG	2 cut(s)	138, 403
CviJI	RGCY	7 cut(s)	18, 122, 149, 188, 236, 388, 458
CviKI_1	RGCY	7 cut(s)	18, 122, 149, 188, 236, 388, 458
CviQI	GTAC	2 cut(s)	165, 660
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	7 cut(s)	64, 128, 135, 327, 600, 651, 666
DpnII	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
DriI	GACNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	4 cut(s)	7, 25, 92, 461
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EarI	CTCTTC	4 cut(s)	7, 25, 92, 461
EciI	GGCGGA	4 cut(s)	13, 166, 196, 573
Eco130I	CCWWGG	2 cut(s)	104, 137
Eco31I	GGTCTC	1 cut(s)	94
Eco32I	GATATC	2 cut(s)	473, 556
Eco47I	GGWCC	4 cut(s)	35, 227, 337, 431
EcoRV	GATATC	2 cut(s)	473, 556
EcoT14I	CCWWGG	2 cut(s)	104, 137
ErhI	CCWWGG	2 cut(s)	104, 137
FaeI	CATG	2 cut(s)	141, 406
FaiI	YATR	3 cut(s)	139, 335, 404
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	137, 402
Fnu4HI	GCNGC	6 cut(s)	51, 120, 189, 210, 400, 409
Fsp4HI	GCNGC	6 cut(s)	51, 120, 189, 210, 400, 409
FspBI	CTAG	2 cut(s)	393, 477
GlaI	GCGC	2 cut(s)	196, 643
GluI	GCNGC	6 cut(s)	51, 120, 189, 210, 400, 409
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	388, 458
HapII	CCGG	6 cut(s)	33, 343, 385, 455, 488, 497
HhaI	GCGC	2 cut(s)	197, 644
Hin1II	CATG	2 cut(s)	141, 406
Hin6I	GCGC	2 cut(s)	195, 642
HinP1I	GCGC	2 cut(s)	195, 642
HincII	GTYRAC	2 cut(s)	382, 628
HindII	GTYRAC	2 cut(s)	382, 628
HinfI	GANTC	9 cut(s)	81, 114, 173, 203, 257, 298, 419, 521, 580
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	6 cut(s)	33, 343, 385, 455, 488, 497
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	382, 628
Hpy188I	TCNGA	4 cut(s)	80, 86, 287, 297
Hpy188III	TCNNGA	2 cut(s)	373, 497
Hpy8I	GTNNAC	2 cut(s)	382, 628
HpyCH4III	ACNGT	5 cut(s)	43, 369, 415, 615, 659
HpyCH4IV	ACGT	1 cut(s)	670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 194, 405, 408
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	141, 406
HspAI	GCGC	2 cut(s)	195, 642
Kpn2I	TCCGGA	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
LguI	GCTCTTC	1 cut(s)	25
LpnPI	CCDG	7 cut(s)	46, 356, 398, 448, 468, 501, 510
Lsp1109I	GCAGC	4 cut(s)	131, 175, 411, 420
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	2 cut(s)	393, 477
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	2 cut(s)	215, 506
MalI	GATC	7 cut(s)	64, 128, 135, 327, 600, 651, 666
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
MboII	GAAGA	9 cut(s)	12, 24, 109, 194, 252, 255, 478, 558, 644
MflI	RGATCY	2 cut(s)	62, 126
MluCI	AATT	3 cut(s)	244, 593, 604
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	7 cut(s)	8, 80, 230, 279, 282, 285, 493
MroI	TCCGGA	1 cut(s)	496
MseI	TTAA	3 cut(s)	291, 381, 603
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	6 cut(s)	33, 343, 385, 455, 488, 497
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	185, 194, 405, 408
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
NlaIII	CATG	2 cut(s)	141, 406
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	4 cut(s)	177, 220, 546, 549
PfeI	GAWTC	8 cut(s)	81, 114, 173, 257, 298, 419, 521, 580
PinAI	ACCGGT	2 cut(s)	342, 487
PkrI	GCNGC	6 cut(s)	52, 121, 190, 211, 401, 410
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	4 cut(s)	35, 227, 337, 431
PsuI	RGATCY	2 cut(s)	62, 126
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	166, 661
RsaNI	GTAC	2 cut(s)	165, 660
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	291, 381, 603
SatI	GCNGC	6 cut(s)	51, 120, 189, 210, 400, 409
Sau3AI	GATC	7 cut(s)	62, 126, 133, 325, 598, 649, 664
Sau96I	GGNCC	4 cut(s)	35, 227, 337, 431
SchI	GAGTC	1 cut(s)	197
SetI	ASST	9 cut(s)	40, 106, 124, 151, 166, 190, 222, 442, 673
SfaNI	GCATC	1 cut(s)	569
SinI	GGWCC	4 cut(s)	35, 227, 337, 431
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	3 cut(s)	244, 593, 604
SsiI	CCGC	7 cut(s)	24, 51, 177, 207, 210, 429, 584
SspMI	CTAG	2 cut(s)	393, 477
StyI	CCWWGG	2 cut(s)	104, 137
TaaI	ACNGT	5 cut(s)	43, 369, 415, 615, 659
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	5 cut(s)	171, 255, 324, 540, 597
TasI	AATT	3 cut(s)	244, 593, 604
TauI	GCSGC	2 cut(s)	53, 212
TfiI	GAWTC	8 cut(s)	81, 114, 173, 257, 298, 419, 521, 580
Tru1I	TTAA	3 cut(s)	291, 381, 603
Tru9I	TTAA	3 cut(s)	291, 381, 603
TscAI	CASTG	1 cut(s)	662
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	4 cut(s)	119, 188, 399, 408
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	5 cut(s)	75, 119, 212, 318, 592
TspRI	CASTG	1 cut(s)	662
VpaK11BI	GGWCC	4 cut(s)	35, 227, 337, 431
XspI	CTAG	2 cut(s)	393, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.