Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

21478739 .. 21481341

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCGGCGAGGAGGCAGAGCCACCGCAGCAGCAGCCGCAGGAGGAGCAGGAGCCCAATTATGCAATCCCAAACCCAAGCCCACGGGGCCCCAAGAAATCCGATTCCGCGGCGTGCGGAAGCGGCCGTGGGGCCGATTCGCCGCCGAGATCAGAGACCCCTGGAAAAAGACTCGGGTCTGGCTCGGAACTTTCGACTCGGCGGAGGACGCGGCTCGAGCCTACGATGCCGCAGCCCGATCTCTCCGCGGGCCCAAGGCCAAGACCAACTTCCCTCCCCCCACCTCCGCCGCGGATTACGACATCAACAATAACCACCGCCTCCCTCCTCATCATCCTTCTCTCTACGACGACGACACGGTTTGCGATGTCGTTCAGGCAAGCAGGCCCACCTCCAGCAGCCTCAGCAGCACCGTCGAGTCTTTCAGTGGGCCCCGCCCCCAGCCCAGGCCCACCTCCGATGCTCAGTTGCAGCGGAGACCCGTGCACCCTGTCCCACCCGATGACTGCCACAGCGACTGCGACTCCTCATCCTCCGTCGTAGACGACGGCGATGATTGCGTCCTGACGTCGTCGTTCCGGAGAGTCTCGCCTTTGCCGTTCGATCTCAACCTGCCGCCGCCCCAGATGATGGACGGCCTCGATTTATTCAAATCCGGTGAGGTTTGTGGTGATGATCATGATCTTCAAGCCACCGCTTTGTGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

25.47

Weight (kDa)

6.58

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	618
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	4 cut(s)	108, 209, 246, 290
AccIII	TCCGGA	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	444, 628
AgsI	TTSAA	2 cut(s)	649, 686
AjnI	CCWGG	2 cut(s)	158, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	3 cut(s)	147, 469, 589
Alw44I	GTGCAC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	516
Ama87I	CYCGRG	2 cut(s)	171, 213
Aor13HI	TCCGGA	1 cut(s)	576
AoxI	GGCC	9 cut(s)	86, 122, 130, 248, 255, 383, 428, 446, 634
ApaI	GGGCCC	3 cut(s)	90, 252, 432
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	7 cut(s)	26, 29, 32, 230, 396, 405, 469
AspS9I	GGNCC	9 cut(s)	86, 87, 130, 248, 249, 384, 428, 429, 447
AsuHPI	GGTGA	2 cut(s)	668, 680
AvaI	CYCGRG	2 cut(s)	171, 213
BaeGI	GKGCMC	4 cut(s)	90, 252, 432, 486
BanII	GRGCYC	4 cut(s)	55, 90, 252, 432
Bbv12I	GWGCWC	1 cut(s)	486
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	7 cut(s)	38, 41, 44, 242, 408, 417, 481
BccI	CCATC	1 cut(s)	622
BceAI	ACGGC	4 cut(s)	109, 562, 580, 649
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	160, 445
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	147, 469, 589
BfuAI	ACCTGC	1 cut(s)	618
BglI	GCCNNNNNGGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	160, 445
BmeT110I	CYCGRG	2 cut(s)	171, 213
BmgT120I	GGNCC	9 cut(s)	86, 87, 130, 248, 249, 384, 428, 429, 447
BmiI	GGNNCC	8 cut(s)	52, 87, 88, 89, 131, 250, 430, 431
BmrFI	CCNGG	2 cut(s)	160, 445
BmsI	GCATC	2 cut(s)	214, 448
BoxI	GACNNNNGTC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	2 cut(s)	147, 469
BsaJI	CCNNGG	8 cut(s)	81, 106, 125, 158, 244, 252, 288, 443
BsaWI	WCCGGW	2 cut(s)	576, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 628
Bse8I	GATNNNNATC	1 cut(s)	678
BseAI	TCCGGA	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	160, 445
BseDI	CCNNGG	8 cut(s)	81, 106, 125, 158, 244, 252, 288, 443
BseGI	GGATG	2 cut(s)	331, 527
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	444, 628
BseMII	CTCAG	2 cut(s)	415, 476
BseRI	GAGGAG	4 cut(s)	24, 57, 315, 514
BseSI	GKGCMC	4 cut(s)	90, 252, 432, 486
BseX3I	CGGCCG	1 cut(s)	122
BseXI	GCAGC	7 cut(s)	38, 41, 44, 242, 408, 417, 481
BseYI	CCCAGC	1 cut(s)	438
Bsh1236I	CGCG	4 cut(s)	108, 209, 246, 290
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	9 cut(s)	88, 124, 132, 250, 257, 385, 430, 448, 636
BsiEI	CGRYCG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	2 cut(s)	171, 213
BsiSI	CCGG	2 cut(s)	577, 654
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	444, 628
BsmAI	GTCTC	3 cut(s)	147, 469, 589
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	9 cut(s)	88, 124, 132, 250, 257, 385, 430, 448, 636
Bso31I	GGTCTC	2 cut(s)	147, 469
BsoBI	CYCGRG	2 cut(s)	171, 213
Bsp120I	GGGCCC	3 cut(s)	86, 248, 428
Bsp1286I	GDGCHC	5 cut(s)	55, 90, 252, 432, 486
Bsp13I	TCCGGA	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	147, 236, 601, 673, 679
BspANI	GGCC	9 cut(s)	88, 124, 132, 250, 257, 385, 430, 448, 636
BspCNI	CTCAG	2 cut(s)	414, 475
BspEI	TCCGGA	1 cut(s)	576
BspFNI	CGCG	4 cut(s)	108, 209, 246, 290
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	8 cut(s)	52, 87, 88, 89, 131, 250, 430, 431
BspMI	ACCTGC	1 cut(s)	618
BspTNI	GGTCTC	2 cut(s)	147, 469
BssECI	CCNNGG	8 cut(s)	81, 106, 125, 158, 244, 252, 288, 443
BssMI	GATC	5 cut(s)	147, 236, 601, 673, 679
BssNI	GRCGYC	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	160, 445
Bst4CI	ACNGT	2 cut(s)	358, 412
BstACI	GRCGYC	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	113, 248, 379, 383
BstDEI	CTNAG	2 cut(s)	401, 462
BstDSI	CCRYGG	5 cut(s)	81, 106, 125, 244, 288
BstF5I	GGATG	2 cut(s)	331, 527
BstFNI	CGCG	4 cut(s)	108, 209, 246, 290
BstKTI	GATC	5 cut(s)	150, 239, 604, 676, 682
BstMAI	GTCTC	3 cut(s)	147, 469, 589
BstMBI	GATC	5 cut(s)	147, 236, 601, 673, 679
BstMCI	CGRYCG	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	160, 445
BstPAI	GACNNNNGTC	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	158, 443
BstSLI	GKGCMC	4 cut(s)	90, 252, 432, 486
BstUI	CGCG	4 cut(s)	108, 209, 246, 290
BstV1I	GCAGC	7 cut(s)	38, 41, 44, 242, 408, 417, 481
BstZI	CGGCCG	1 cut(s)	122
BsuRI	GGCC	9 cut(s)	88, 124, 132, 250, 257, 385, 430, 448, 636
BtgI	CCRYGG	5 cut(s)	81, 106, 125, 244, 288
BtgZI	GCGATG	2 cut(s)	378, 564
BtsCI	GGATG	2 cut(s)	331, 527
BtsIMutI	CAGTG	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	618
Cac8I	GCNNGC	4 cut(s)	113, 248, 379, 383
CaiI	CAGNNNCTG	1 cut(s)	516
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	9 cut(s)	86, 87, 130, 248, 249, 384, 428, 429, 447
Cfr42I	CCGCGG	3 cut(s)	109, 247, 291
CseI	GACGC	2 cut(s)	215, 547
CviAII	CATG	1 cut(s)	677
DdeI	CTNAG	2 cut(s)	401, 462
DpnI	GATC	5 cut(s)	149, 238, 603, 675, 681
DpnII	GATC	5 cut(s)	147, 236, 601, 673, 679
EaeI	YGGCCR	1 cut(s)	122
EagI	CGGCCG	1 cut(s)	122
EciI	GGCGGA	2 cut(s)	215, 274
EclXI	CGGCCG	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	4 cut(s)	55, 90, 252, 432
Eco31I	GGTCTC	2 cut(s)	147, 469
Eco52I	CGGCCG	1 cut(s)	122
Eco88I	CYCGRG	2 cut(s)	171, 213
EcoO109I	RGGNCCY	3 cut(s)	86, 87, 429
EcoRII	CCWGG	2 cut(s)	158, 443
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	4 cut(s)	55, 90, 252, 432
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	680
FaiI	YATR	2 cut(s)	61, 678
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	1 cut(s)	676
FauI	CCCGC	2 cut(s)	239, 440
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	540
FokI	GGATG	2 cut(s)	318, 514
FriOI	GRGCYC	4 cut(s)	55, 90, 252, 432
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	9 cut(s)	88, 124, 132, 250, 257, 385, 430, 448, 636
HapII	CCGG	2 cut(s)	577, 654
HgaI	GACGC	2 cut(s)	215, 547
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	1 cut(s)	680
HinfI	GANTC	7 cut(s)	102, 135, 169, 194, 416, 521, 582
HpaII	CCGG	2 cut(s)	577, 654
HphI	GGTGA	2 cut(s)	668, 680
Hpy166II	GTNNAC	2 cut(s)	484, 541
Hpy188I	TCNGA	4 cut(s)	101, 152, 185, 457
Hpy188III	TCNNGA	3 cut(s)	562, 577, 677
Hpy8I	GTNNAC	2 cut(s)	484, 541
Hpy99I	CGWCG	7 cut(s)	350, 353, 416, 539, 548, 571, 574
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	358, 412
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	3 cut(s)	63, 469, 484
HpyF3I	CTNAG	2 cut(s)	401, 462
HpySE526I	ACGT	1 cut(s)	566
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	1 cut(s)	680
Kpn2I	TCCGGA	1 cut(s)	576
Ksp22I	TGATCA	1 cut(s)	673
KspI	CCGCGG	3 cut(s)	109, 247, 291
Kzo9I	GATC	5 cut(s)	147, 236, 601, 673, 679
LmnI	GCTCC	2 cut(s)	44, 50
Lsp1109I	GCAGC	7 cut(s)	38, 41, 44, 242, 408, 417, 481
LweI	GCATC	2 cut(s)	214, 448
MaeII	ACGT	1 cut(s)	566
MalI	GATC	5 cut(s)	149, 238, 603, 675, 681
MboI	GATC	5 cut(s)	147, 236, 601, 673, 679
MboII	GAAGA	1 cut(s)	674
MhlI	GDGCHC	5 cut(s)	55, 90, 252, 432, 486
MluCI	AATT	1 cut(s)	56
MlyI	GAGTC	5 cut(s)	163, 188, 425, 515, 591
MroI	TCCGGA	1 cut(s)	576
MspA1I	CMGCKG	4 cut(s)	108, 246, 290, 472
MspI	CCGG	2 cut(s)	577, 654
MspR9I	CCNGG	2 cut(s)	160, 445
MvaI	CCWGG	2 cut(s)	160, 445
MvnI	CGCG	4 cut(s)	108, 209, 246, 290
NdeII	GATC	5 cut(s)	147, 236, 601, 673, 679
NlaIII	CATG	1 cut(s)	680
NlaIV	GGNNCC	8 cut(s)	52, 87, 88, 89, 131, 250, 430, 431
NmeAIII	GCCGAG	2 cut(s)	169, 176
PaeR7I	CTCGAG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 593
PfeI	GAWTC	2 cut(s)	102, 135
PflFI	GACNNNGTC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	628
PleI	GAGTC	5 cut(s)	163, 188, 424, 515, 590
PpsI	GAGTC	5 cut(s)	163, 188, 424, 515, 590
PshAI	GACNNNNGTC	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	158, 443
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	2 cut(s)	158, 443
PspN4I	GGNNCC	8 cut(s)	52, 87, 88, 89, 131, 250, 430, 431
PspOMI	GGGCCC	3 cut(s)	86, 248, 428
PspPI	GGNCC	9 cut(s)	86, 87, 130, 248, 249, 384, 428, 429, 447
PspXI	VCTCGAGB	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	516
PsyI	GACNNNGTC	1 cut(s)	568
SacII	CCGCGG	3 cut(s)	109, 247, 291
Sau3AI	GATC	5 cut(s)	147, 236, 601, 673, 679
Sau96I	GGNCC	9 cut(s)	86, 87, 130, 248, 249, 384, 428, 429, 447
SchI	GAGTC	5 cut(s)	163, 188, 425, 515, 591
ScrFI	CCNGG	2 cut(s)	160, 445
SduI	GDGCHC	5 cut(s)	55, 90, 252, 432, 486
SetI	ASST	6 cut(s)	284, 392, 455, 569, 612, 663
SfaNI	GCATC	2 cut(s)	214, 448
Sfr274I	CTCGAG	1 cut(s)	213
Sfr303I	CCGCGG	3 cut(s)	109, 247, 291
SgrBI	CCGCGG	3 cut(s)	109, 247, 291
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	158, 443
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	358, 412
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	5 cut(s)	192, 214, 414, 600, 639
TasI	AATT	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	102, 135
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	7 cut(s)	26, 29, 32, 230, 396, 405, 469
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	568
Van91I	CCANNNNNTGG	1 cut(s)	628
VneI	GTGCAC	1 cut(s)	482
XhoI	CTCGAG	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	540
ZraI	GACGTC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.