RchiOBHm_Chr2g0157901

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004659
Physical Location & Seq
Reverse (-)
74240361 .. 74241752
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52662

Sequence Viewer

Length: 696 bp
ATGCGGCGAGCAGGCAGAGCCACCGCGGCGGCAGCCAACAACCAATCACCGGCATCATGCAAGAAGCCCAGGGCGGCAGCCGCAGCCCCGAAAACGACGCCGTCTTCGTCGCAGCAGCAGCAGCAACCGCAAATCAGATTCCGCGGCGTGCGGAAGCGGCCGTGGGGCCGATTCGCCGCCGAGATCAGAGACCCGTGGAAGAAGACGCGTGTCTGGCTCGGGACCTTCGATTCCGCCGAGGACGCGGCCAGAGCGTATGATGCCGCCGCCCGATCGTTACGGGGGCCCAAGGCCAAGACCAACTTCTCCCTGCCCTGCGATCCTTTCTACGGCGGCGATTTCAACGACGACGCGATTTGCTCTAAGATCGATGTGATTCAGGCCAGCCGGCCGACCTCCAGCAGCCTCAGCAGCACCGTCGAGTCCTTCAGCGGACCGAGGGTCAACTCCGGCAAGCCTCCTCCGATGAAACCCACGCAGCGGAGACCGGTGTATCCGGTTTCGCCAGAGGACTGCCACAGCGATTGTGACTCATCTTCCTCCGTCGTCGACGACGGTGACGATTGCGTCCTCACGTCGTCTTTCCGCAAAGCCCTGCCCTTCGATCTGAACATGCCGCCGCCGATGGATGGTTTTGATTTCTCCGGCGACAACGTGGATGATCACGATCTTCAAGCCACCGCGCTCTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

231

Amino Acids

25.04

Weight (kDa)

8.69

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 46 - 95 6.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 549
AccII CGCG 6 cut(s) 26, 144, 208, 245, 353, 683
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 3 cut(s) 158, 246, 389
AcuI CTGAAG 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 98
AfiI CCNNNNNNNGG 4 cut(s) 49, 329, 480, 629
AflIII ACRYGT 1 cut(s) 206
AgeI ACCGGT 1 cut(s) 487
AgsI TTSAA 2 cut(s) 343, 674
AhdI GACNNNNNGTC 1 cut(s) 440
AjiI CACGTC 1 cut(s) 576
AjnI CCWGG 1 cut(s) 68
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
Alw26I GTCTC 2 cut(s) 183, 478
AlwI GGATC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 7 cut(s) 158, 166, 246, 284, 291, 381, 389
ApaI GGGCCC 1 cut(s) 288
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 487
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 5 cut(s) 166, 222, 284, 285, 434
AsuHPI GGTGA 2 cut(s) 39, 569
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 2 cut(s) 222, 434
BaeGI GKGCMC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 476, 509
BanII GRGCYC 1 cut(s) 288
BbsI GAAGAC 2 cut(s) 96, 209
BbvCI CCTCAGC 1 cut(s) 407
BccI CCATC 2 cut(s) 619, 623
BceAI ACGGC 3 cut(s) 85, 145, 346
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 70
BciVI GTATCC 1 cut(s) 504
BclI TGATCA 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 183, 478
BfuI GTATCC 1 cut(s) 504
BglI GCCNNNNNGGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 222, 434
BmeRI GACNNNNNGTC 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 576
BmgT120I GGNCC 5 cut(s) 166, 222, 284, 285, 434
BmiI GGNNCC 4 cut(s) 167, 223, 285, 286
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 62, 250
BoxI GACNNNNGTC 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 96, 209
BpmI CTGGAG 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 98
BsaI GGTCTC 2 cut(s) 183, 478
BsaJI CCNNGG 9 cut(s) 24, 68, 69, 142, 161, 194, 237, 288, 437
BsaWI WCCGGW 2 cut(s) 487, 496
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 329, 480, 629
Bse118I RCCGGY 3 cut(s) 49, 387, 487
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 1 cut(s) 70
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 9 cut(s) 24, 68, 69, 142, 161, 194, 237, 288, 437
BseGI GGATG 2 cut(s) 634, 664
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 4 cut(s) 49, 329, 480, 629
BseMII CTCAG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 288
BseX3I CGGCCG 2 cut(s) 158, 389
Bsh1236I CGCG 6 cut(s) 26, 144, 208, 245, 353, 683
Bsh1285I CGRYCG 3 cut(s) 161, 275, 392
BshFI GGCC 7 cut(s) 160, 168, 248, 286, 293, 383, 391
BshTI ACCGGT 1 cut(s) 487
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 3 cut(s) 161, 275, 392
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 6 cut(s) 50, 388, 450, 488, 497, 645
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 4 cut(s) 49, 329, 480, 629
BsmAI GTCTC 2 cut(s) 183, 478
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 7 cut(s) 160, 168, 248, 286, 293, 383, 391
Bso31I GGTCTC 2 cut(s) 183, 478
BsoBI CYCGRG 1 cut(s) 218
Bsp120I GGGCCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
BspANI GGCC 7 cut(s) 160, 168, 248, 286, 293, 383, 391
BspCNI CTCAG 1 cut(s) 420
BspDI ATCGAT 1 cut(s) 369
BspFNI CGCG 6 cut(s) 26, 144, 208, 245, 353, 683
BspLI GGNNCC 4 cut(s) 167, 223, 285, 286
BspPI GGATC 1 cut(s) 314
BspTNI GGTCTC 2 cut(s) 183, 478
BsrFI RCCGGY 3 cut(s) 49, 387, 487
BssAI RCCGGY 3 cut(s) 49, 387, 487
BssECI CCNNGG 9 cut(s) 24, 68, 69, 142, 161, 194, 237, 288, 437
BssMI GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
BssNI GRCGYC 1 cut(s) 98
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 418, 557
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 6 cut(s) 9, 13, 149, 385, 389, 455
BstDEI CTNAG 2 cut(s) 363, 407
BstDSI CCRYGG 4 cut(s) 24, 142, 161, 194
BstF5I GGATG 2 cut(s) 634, 664
BstFNI CGCG 6 cut(s) 26, 144, 208, 245, 353, 683
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 7 cut(s) 186, 275, 322, 369, 607, 664, 670
BstMAI GTCTC 2 cut(s) 183, 478
BstMBI GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
BstMCI CGRYCG 3 cut(s) 161, 275, 392
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 6 cut(s) 26, 144, 208, 245, 353, 683
BstV2I GAAGAC 2 cut(s) 96, 209
BstZI CGGCCG 2 cut(s) 158, 389
Bsu15I ATCGAT 1 cut(s) 369
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 7 cut(s) 160, 168, 248, 286, 293, 383, 391
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 4 cut(s) 24, 142, 161, 194
BtrI CACGTC 1 cut(s) 576
BtsCI GGATG 2 cut(s) 634, 664
Cac8I GCNNGC 6 cut(s) 9, 13, 149, 385, 389, 455
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 3 cut(s) 49, 387, 487
Cfr13I GGNCC 5 cut(s) 166, 222, 284, 285, 434
Cfr42I CCGCGG 2 cut(s) 27, 145
ClaI ATCGAT 1 cut(s) 369
CpoI CGGWCCG 1 cut(s) 434
CseI GACGC 5 cut(s) 106, 214, 251, 359, 556
CspAI ACCGGT 1 cut(s) 487
CspCI CAANNNNNGTGG 2 cut(s) 506, 541
CspI CGGWCCG 1 cut(s) 434
CviAII CATG 2 cut(s) 57, 613
DdeI CTNAG 2 cut(s) 363, 407
DpnI GATC 7 cut(s) 185, 274, 321, 368, 606, 663, 669
DpnII GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
DrdI GACNNNNNNGTC 1 cut(s) 566
DriI GACNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 3 cut(s) 158, 246, 389
EagI CGGCCG 2 cut(s) 158, 389
Eam1105I GACNNNNNGTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 223
EclXI CGGCCG 2 cut(s) 158, 389
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 2 cut(s) 183, 478
Eco47I GGWCC 2 cut(s) 222, 434
Eco52I CGGCCG 2 cut(s) 158, 389
Eco57I CTGAAG 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 218
EcoO109I RGGNCCY 2 cut(s) 222, 284
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 60, 616
FaiI YATR 3 cut(s) 58, 258, 614
FalI AAGNNNNNCTT 2 cut(s) 287, 319
FaqI GGGAC 1 cut(s) 235
FatI CATG 2 cut(s) 56, 612
FbaI TGATCA 1 cut(s) 661
FblI GTMKAC 1 cut(s) 549
FokI GGATG 2 cut(s) 641, 671
FriOI GRGCYC 1 cut(s) 288
GlaI GCGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 382
HaeIII GGCC 7 cut(s) 160, 168, 248, 286, 293, 383, 391
HapII CCGG 6 cut(s) 50, 388, 450, 488, 497, 645
HgaI GACGC 5 cut(s) 106, 214, 251, 359, 556
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 2 cut(s) 60, 616
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 2 cut(s) 445, 550
HindII GTYRAC 2 cut(s) 445, 550
HinfI GANTC 6 cut(s) 138, 171, 230, 376, 422, 530
HpaII CCGG 6 cut(s) 50, 388, 450, 488, 497, 645
HphI GGTGA 2 cut(s) 39, 569
Hpy166II GTNNAC 2 cut(s) 445, 550
Hpy188I TCNGA 5 cut(s) 137, 188, 465, 609, 695
Hpy188III TCNNGA 2 cut(s) 220, 665
Hpy8I GTNNAC 2 cut(s) 445, 550
HpyAV CCTTC 3 cut(s) 235, 436, 610
HpyCH4III ACNGT 2 cut(s) 418, 557
HpyCH4IV ACGT 2 cut(s) 575, 654
HpyCH4V TGCA 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 363, 407
HpySE526I ACGT 2 cut(s) 575, 654
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 60, 616
HspAI GCGC 1 cut(s) 683
KroI GCCGGC 1 cut(s) 387
KroNI GCCGGC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 661
KspI CCGCGG 2 cut(s) 27, 145
Kzo9I GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
LweI GCATC 2 cut(s) 62, 250
MaeII ACGT 2 cut(s) 575, 654
MaeIII GTNAC 3 cut(s) 276, 527, 557
MalI GATC 7 cut(s) 185, 274, 321, 368, 606, 663, 669
MboI GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
MboII GAAGA 5 cut(s) 96, 211, 214, 528, 662
MhlI GDGCHC 1 cut(s) 288
MluI ACGCGT 1 cut(s) 206
MlyI GAGTC 2 cut(s) 431, 524
MnlI CCTC 9 cut(s) 232, 406, 416, 432, 468, 471, 502, 550, 581
MroNI GCCGGC 1 cut(s) 387
MspA1I CMGCKG 4 cut(s) 26, 144, 432, 481
MspI CCGG 6 cut(s) 50, 388, 450, 488, 497, 645
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 6 cut(s) 26, 144, 208, 245, 353, 683
NaeI GCCGGC 1 cut(s) 389
NdeII GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
NgoMIV GCCGGC 1 cut(s) 387
NlaIII CATG 2 cut(s) 60, 616
NlaIV GGNNCC 4 cut(s) 167, 223, 285, 286
NmeAIII GCCGAG 2 cut(s) 205, 262
NmuCI GTSAC 2 cut(s) 527, 557
NspI RCATGY 1 cut(s) 616
PasI CCCWGGG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 4 cut(s) 104, 225, 234, 558
PdiI GCCGGC 1 cut(s) 389
PfeI GAWTC 4 cut(s) 138, 171, 230, 376
PflFI GACNNNGTC 1 cut(s) 100
PinAI ACCGGT 1 cut(s) 487
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 2 cut(s) 430, 524
PpsI GAGTC 2 cut(s) 430, 524
PpuMI RGGWCCY 1 cut(s) 222
PshAI GACNNNNGTC 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 4 cut(s) 167, 223, 285, 286
PspOMI GGGCCC 1 cut(s) 284
PspPI GGNCC 5 cut(s) 166, 222, 284, 285, 434
PspPPI RGGWCCY 1 cut(s) 222
PsyI GACNNNGTC 1 cut(s) 100
PvuI CGATCG 1 cut(s) 275
Rsr2I CGGWCCG 1 cut(s) 434
RsrII CGGWCCG 1 cut(s) 434
SacII CCGCGG 2 cut(s) 27, 145
SalI GTCGAC 1 cut(s) 548
Sau3AI GATC 7 cut(s) 183, 272, 319, 366, 604, 661, 667
Sau96I GGNCC 5 cut(s) 166, 222, 284, 285, 434
SchI GAGTC 2 cut(s) 431, 524
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 288
SetI ASST 4 cut(s) 227, 398, 578, 657
SfaNI GCATC 2 cut(s) 62, 250
Sfr303I CCGCGG 2 cut(s) 27, 145
SgrBI CCGCGG 2 cut(s) 27, 145
SgrDI CGTCGACG 1 cut(s) 548
SinI GGWCC 2 cut(s) 222, 434
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 418, 557
TaiI ACGT 2 cut(s) 578, 657
TaqI TCGA 5 cut(s) 228, 369, 420, 549, 603
TaqII GACCGA 1 cut(s) 451
TfiI GAWTC 4 cut(s) 138, 171, 230, 376
TseFI GTSAC 2 cut(s) 527, 557
Tsp45I GTSAC 2 cut(s) 527, 557
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 532
Tth111I GACNNNGTC 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 222, 434
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.