Rorug02G0464300

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004659
Physical Location & Seq
Reverse (-)
59551044 .. 59551409
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0464300.1

Sequence Viewer

Length: 366 bp
ATGGTTCCGATGGGGGTGGGATCAAGCGGTGGTGCAGGTGCTTGTTCTGGAAGCAAGAAGAGCAACAAGCGATTTGAGCTGAAGAAGTGGAACGCAGTAAGTATGTGGGCGTGGGATTTTGTGGTGGATAACTGCGCCATCTGCAGGAACCATATAATGCACCTGTGCATAGAGTGCCAAGCCAACCAGAAAACTGTGACCAGCGAAGAATGTACGGTGGCTTGGGAACTTGCAACCATGCCTTCCACTTCCACTGCATTAGTTGATGCCTCAAGACTCGTCAGGTCTGTCCTTTGGATAACAGCGAGTGGGAGTTCCAGAAGTATGGTCATGATTAAAACCATGCATGTCAAAACCAGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

121

Amino Acids

13.24

Weight (kDa)

9.24

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 43 - 75 1.4e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
AlwI GGATC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 137
BccI CCATC 2 cut(s) 4, 146
BciT130I CCWGG 1 cut(s) 358
BfmI CTRYAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 6, 149
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 358
BseLI CCNNNNNNNGG 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 144
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 1 cut(s) 27
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 6, 149
BspMAI CTGCAG 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 53
BssMI GATC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 196, 217
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 174
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 4 cut(s) 60, 76, 141, 174
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 330
CfoI GCGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 213
CviAII CATG 4 cut(s) 238, 331, 343, 347
CviJI RGCY 4 cut(s) 79, 182, 221, 361
CviKI_1 RGCY 4 cut(s) 79, 182, 221, 361
CviQI GTAC 1 cut(s) 213
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 348
FaeI CATG 4 cut(s) 241, 334, 346, 350
FaiI YATR 9 cut(s) 104, 153, 155, 170, 239, 326, 332, 344, 348
FatI CATG 4 cut(s) 237, 330, 342, 346
GlaI GCGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 241, 334, 346, 350
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 4 cut(s) 48, 273, 318, 331
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 2 cut(s) 196, 217
HpyCH4V TGCA 7 cut(s) 35, 144, 160, 168, 233, 257, 346
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 76, 141, 174
Hsp92II CATG 4 cut(s) 241, 334, 346, 350
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 53
LpnPI CCDG 9 cut(s) 21, 33, 130, 176, 200, 214, 268, 331, 343
LweI GCATC 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 70, 94, 218
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 1 cut(s) 280
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 4 cut(s) 60, 76, 141, 174
NdeII GATC 1 cut(s) 20
NlaIII CATG 4 cut(s) 241, 334, 346, 350
NlaIV GGNNCC 2 cut(s) 6, 149
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 1 cut(s) 350
PagI TCATGA 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 53
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 6, 149
PstI CTGCAG 1 cut(s) 146
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 1 cut(s) 20
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 358
SetI ASST 4 cut(s) 40, 81, 165, 287
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SsiI CCGC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 196, 217
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspRI CASTG 1 cut(s) 259
XceI RCATGY 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.