Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004659

Physical Location & Seq

Genomic Coordinates Reverse (-)

7084727 .. 7086894

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGGAAAGGGAGAGGCTCTTCCGTCGTTGGACCCGCCCTTCCAGTAACCGCCGGTGGATCTGTGAAGGAGCCGAGGTATAGAGGCGTTAGGAAGAGACCTTGGGGTCGATTCGCAGCTGAGATCCGTGATCCATTAAAAAAATCTCGTGTCTGGCTCGGTACTTTCGATTCCGCCGTAGATGCTGCACGCGCTTACGATACCGCCGCACGTAACCTCCGTGGTCCAAAGGCCAAGACCAATTTCCCGATCGATTGTTCTCCTTCTTCTCCTCTCCAACCTCTCACCTACCTCCACAATCAAAACCTCTGTTCTCCTCCGGTGATTCAGAACCAGATCGATCCGTTTATGGACCATCGGTTATACGGCGGAGGTAATTTCCAGGAGCAGCAGCAGCAGCAGATTATTAGTCGGCCGGCGAGTAGCAGCATGAGCAGCACCGTTAAATCTTGTAGCGGACCGAGACCGATGGAAGCCGCGGCGGCGTCTTCGTCGGTGGCGAAACCGTTACATGCGATTAAGAGATATCCGAGAACTCCACCGGTAGCTCCGGAGGATTGTCATAGCGACTGCGATTCTTCGTCGTCTGTTATTGACGACGGAGATGATATCGCATCTTCGTCTTCCCGCCGGAAAACGCCGTTTCAGTTTGATCTTAATTTCCCGCCGTTGGATGGCGTTGACTTATTCGCTGGCGGGATAGATGATCTCCACTGTACCGATCTACGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

26.51

Weight (kDa)

9.08

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 75	3.4e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50640 AT3G20310
fragaria_vesca	FvH4_3g23440 FvH4_3g23440 FvH4_6g42000
malus_domestica	MD03G1194300.v1.1 MD11G1210700.v1.1 MD17G1107200.v1.1
prunus_persica	Prupe.3G209100_v2.0.a1 Prupe.4G222300_v2.0.a1
pyrus_communis	pycom17g09990
rosa_chinensis	RchiOBHm_Chr2g0157901 RchiOBHm_Chr5g0041261
rosa_laevigata	RLG00000021035 RLG00000034044
rosa_multiflora	Rmu_sc0002441.1_g000004 Rmu_sc0002715.1_g000012
rosa_roxburghii	Rroxscaffold_1G00039350 Rroxscaffold_2G00091860
rosa_rugosa	Rorug02G0464300 Rorug05G0191000
rosa_samantha	Rh2AG529700 Rh2BG544300 Rh2CG514000 Rh2DG552600 Rh5AG277100 Rh5BG281900 Rh5CG314100 Rh5DG290600
rosa_wichuraiana	Rw2G043830 Rw5G026070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
AccII	CGCG	2 cut(s)	192, 479
AccIII	TCCGGA	1 cut(s)	550
AclWI	GGATC	4 cut(s)	67, 118, 125, 335
AcoI	YGGCCR	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	2 cut(s)	163, 718
AfiI	CCNNNNNNNGG	2 cut(s)	670, 674
AgeI	ACCGGT	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	381
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	119, 548
AluI	AGCT	2 cut(s)	119, 548
Alw26I	GTCTC	2 cut(s)	91, 457
AlwI	GGATC	4 cut(s)	67, 118, 125, 335
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	2 cut(s)	231, 413
ApeKI	GCWGC	8 cut(s)	116, 185, 388, 391, 394, 397, 426, 435
AsiGI	ACCGGT	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	32, 224, 352, 458
AsuHPI	GGTGA	2 cut(s)	277, 334
AvaII	GGWCC	4 cut(s)	32, 224, 352, 458
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	480, 615
BbvI	GCAGC	8 cut(s)	128, 172, 400, 403, 406, 409, 438, 447
BccI	CCATC	3 cut(s)	363, 463, 668
BceAI	ACGGC	4 cut(s)	161, 382, 625, 652
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	91, 457
BglI	GCCNNNNNGGC	1 cut(s)	482
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	4 cut(s)	32, 224, 352, 458
BmgT120I	GGNCC	4 cut(s)	32, 224, 352, 458
BmiI	GGNNCC	2 cut(s)	34, 72
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	172, 623
BpiI	GAAGAC	2 cut(s)	480, 615
Bsa29I	ATCGAT	2 cut(s)	252, 339
BsaAI	YACGTR	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	485
BsaI	GGTCTC	2 cut(s)	91, 457
BsaJI	CCNNGG	4 cut(s)	74, 101, 220, 477
BsaWI	WCCGGW	3 cut(s)	319, 541, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 674
Bse118I	RCCGGY	3 cut(s)	53, 415, 541
Bse1I	ACTGG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	383
BseCI	ATCGAT	2 cut(s)	252, 339
BseDI	CCNNGG	4 cut(s)	74, 101, 220, 477
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	670, 674
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	2 cut(s)	261, 306
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	8 cut(s)	128, 172, 400, 403, 406, 409, 438, 447
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	192, 479
Bsh1285I	CGRYCG	2 cut(s)	252, 416
BshFI	GGCC	2 cut(s)	233, 415
BshTI	ACCGGT	1 cut(s)	541
BshVI	ATCGAT	2 cut(s)	252, 339
BsiEI	CGRYCG	2 cut(s)	252, 416
BsiSI	CCGG	6 cut(s)	54, 320, 416, 542, 551, 631
BslI	CCNNNNNNNGG	2 cut(s)	670, 674
BsmAI	GTCTC	2 cut(s)	91, 457
BsnI	GGCC	2 cut(s)	233, 415
Bso31I	GGTCTC	2 cut(s)	91, 457
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
BspANI	GGCC	2 cut(s)	233, 415
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	2 cut(s)	252, 339
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	2 cut(s)	192, 479
BspLI	GGNNCC	2 cut(s)	34, 72
BspPI	GGATC	4 cut(s)	67, 118, 125, 335
BspQI	GCTCTTC	1 cut(s)	25
BspTNI	GGTCTC	2 cut(s)	91, 457
BsrFI	RCCGGY	3 cut(s)	53, 415, 541
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	3 cut(s)	53, 415, 541
BssECI	CCNNGG	4 cut(s)	74, 101, 220, 477
BssMI	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
BssNI	GRCGYC	1 cut(s)	485
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	3 cut(s)	442, 507, 716
Bst6I	CTCTTC	2 cut(s)	25, 89
BstACI	GRCGYC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	190, 417, 694
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	2 cut(s)	220, 477
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	2 cut(s)	192, 479
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	9 cut(s)	62, 126, 133, 252, 339, 343, 655, 709, 724
BstMAI	GTCTC	2 cut(s)	91, 457
BstMBI	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
BstMCI	CGRYCG	2 cut(s)	252, 416
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 191, 394, 397, 432, 435, 482
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	2 cut(s)	192, 479
BstV1I	GCAGC	8 cut(s)	128, 172, 400, 403, 406, 409, 438, 447
BstV2I	GAAGAC	2 cut(s)	480, 615
BstX2I	RGATCY	2 cut(s)	59, 123
BstYI	RGATCY	2 cut(s)	59, 123
BstZI	CGGCCG	1 cut(s)	413
Bsu15I	ATCGAT	2 cut(s)	252, 339
BsuRI	GGCC	2 cut(s)	233, 415
BsuTUI	ATCGAT	2 cut(s)	252, 339
BtgI	CCRYGG	2 cut(s)	220, 477
BtsCI	GGATG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	712
Cac8I	GCNNGC	3 cut(s)	190, 417, 694
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	3 cut(s)	53, 415, 541
Cfr13I	GGNCC	4 cut(s)	32, 224, 352, 458
Cfr42I	CCGCGG	1 cut(s)	480
ClaI	ATCGAT	2 cut(s)	252, 339
CpoI	CGGWCCG	1 cut(s)	458
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	162, 717
CspAI	ACCGGT	1 cut(s)	541
CspI	CGGWCCG	1 cut(s)	458
CviAII	CATG	2 cut(s)	430, 512
CviJI	RGCY	8 cut(s)	18, 73, 119, 157, 233, 415, 476, 548
CviKI_1	RGCY	8 cut(s)	18, 73, 119, 157, 233, 415, 476, 548
CviQI	GTAC	2 cut(s)	162, 717
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	9 cut(s)	61, 125, 132, 251, 338, 342, 654, 708, 723
DpnII	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	2 cut(s)	25, 89
EarI	CTCTTC	2 cut(s)	25, 89
EciI	GGCGGA	2 cut(s)	163, 384
EclXI	CGGCCG	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	101
Eco31I	GGTCTC	2 cut(s)	91, 457
Eco32I	GATATC	2 cut(s)	527, 610
Eco47I	GGWCC	4 cut(s)	32, 224, 352, 458
Eco52I	CGGCCG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	2 cut(s)	527, 610
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	433, 515
FaiI	YATR	6 cut(s)	81, 350, 364, 431, 513, 564
FatI	CATG	2 cut(s)	429, 511
FauI	CCCGC	4 cut(s)	43, 635, 672, 689
FokI	GGATG	1 cut(s)	686
GlaI	GCGC	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	233, 415
HapII	CCGG	6 cut(s)	54, 320, 416, 542, 551, 631
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	433, 515
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	4 cut(s)	111, 170, 325, 575
HpaII	CCGG	6 cut(s)	54, 320, 416, 542, 551, 631
HphI	GGTGA	2 cut(s)	277, 334
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	3 cut(s)	330, 531, 734
Hpy188III	TCNNGA	2 cut(s)	247, 551
Hpy8I	GTNNAC	1 cut(s)	682
Hpy99I	CGWCG	4 cut(s)	29, 496, 586, 602
HpyAV	CCTTC	3 cut(s)	50, 61, 273
HpyCH4III	ACNGT	3 cut(s)	442, 507, 716
HpyCH4IV	ACGT	2 cut(s)	211, 727
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 191, 394, 397, 432, 435, 482
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	211, 727
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	2 cut(s)	433, 515
HspAI	GCGC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
KspI	CCGCGG	1 cut(s)	480
Kzo9I	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	3 cut(s)	70, 385, 553
Lsp1109I	GCAGC	8 cut(s)	128, 172, 400, 403, 406, 409, 438, 447
LweI	GCATC	2 cut(s)	172, 623
MaeII	ACGT	2 cut(s)	211, 727
MaeIII	GTNAC	3 cut(s)	46, 212, 507
MalI	GATC	9 cut(s)	61, 125, 132, 251, 338, 342, 654, 708, 723
MboI	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
MboII	GAAGA	7 cut(s)	12, 106, 258, 480, 570, 609, 615
MflI	RGATCY	2 cut(s)	59, 123
MluCI	AATT	3 cut(s)	241, 376, 658
MmeI	TCCRAC	3 cut(s)	10, 301, 651
MroI	TCCGGA	1 cut(s)	550
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	4 cut(s)	137, 444, 519, 657
MspA1I	CMGCKG	2 cut(s)	119, 479
MspI	CCGG	6 cut(s)	54, 320, 416, 542, 551, 631
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	192, 479
MwoI	GCNNNNNNNGC	7 cut(s)	182, 191, 394, 397, 432, 435, 482
NaeI	GCCGGC	1 cut(s)	417
NdeII	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	2 cut(s)	433, 515
NlaIV	GGNNCC	2 cut(s)	34, 72
NmeAIII	GCCGAG	1 cut(s)	99
NspI	RCATGY	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	4 cut(s)	165, 174, 217, 497
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	111, 170, 325, 575
PfoI	TCCNGGA	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	541
Ple19I	CGATCG	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	34, 72
PspPI	GGNCC	4 cut(s)	32, 224, 352, 458
PsuI	RGATCY	2 cut(s)	59, 123
PvuI	CGATCG	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	163, 718
RsaNI	GTAC	2 cut(s)	162, 717
Rsr2I	CGGWCCG	1 cut(s)	458
RsrII	CGGWCCG	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	4 cut(s)	137, 444, 519, 657
Sau3AI	GATC	9 cut(s)	59, 123, 130, 249, 336, 340, 652, 706, 721
Sau96I	GGNCC	4 cut(s)	32, 224, 352, 458
ScrFI	CCNGG	1 cut(s)	383
SfaNI	GCATC	2 cut(s)	172, 623
Sfr303I	CCGCGG	1 cut(s)	480
SgrAI	CRCCGGYG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	480
SinI	GGWCC	4 cut(s)	32, 224, 352, 458
Sse9I	AATT	3 cut(s)	241, 376, 658
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	3 cut(s)	442, 507, 716
TaiI	ACGT	2 cut(s)	214, 730
TaqI	TCGA	4 cut(s)	109, 168, 252, 339
TaqII	GACCGA	2 cut(s)	475, 481
TasI	AATT	3 cut(s)	241, 376, 658
TauI	GCSGC	4 cut(s)	209, 479, 482, 485
TfiI	GAWTC	4 cut(s)	111, 170, 325, 575
Tru1I	TTAA	4 cut(s)	137, 444, 519, 657
Tru9I	TTAA	4 cut(s)	137, 444, 519, 657
TscAI	CASTG	1 cut(s)	719
TseI	GCWGC	8 cut(s)	116, 185, 388, 391, 394, 397, 426, 435
TspGWI	ACGGA	5 cut(s)	13, 116, 209, 333, 615
TspRI	CASTG	1 cut(s)	719
VpaK11BI	GGWCC	4 cut(s)	32, 224, 352, 458
XceI	RCATGY	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.