Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005430

Physical Location & Seq

Genomic Coordinates Forward (+)

16094163 .. 16162321

Gene Structure 68159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG092600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCCGCCGTCGTCGGAGGAATCCACGAATCCCAAGGTTCCGAGAACAGCCGCGAAATCGACGACCTCGCTCGCTTCGCCGTCCAAGAGCACAACACCAAGGAGAATGCTGTGCTTGAGTTTGTGAGGGTTGTGAAGACCAAGCAACAAGTGGTTTCTGGCACTGTGTACTATCTCACCATTGAGGCCACCGATGGGGGTCAGAAGAAGCTTTTTGAGGCCAAGGTCTGGGTTAAGCCTTGGCTCAACTTCAAGGAAGTCCAGGAATTCAAACCCGTTGCTGACCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCCCTAAAGAGCTTCAAGAGATTGTCCATTATAAGGCAGAGGTGATAGAAGATCATGCCAAGTTCAACATGCTTCTTAAGCTGAAGAGGGGAGACGAAGAAGAGAAATATAAAGTTGAAGTGCACAATAACAATGAAGGTGCCTACAATCTGAATCAGATGGAGGCACAGCACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

178

Amino Acids

20.31

Weight (kDa)

5.76

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	6 - 93	2.9e-19	Cystatin domain
SQAPI	PF16845	17 - 93	1e-21	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40880 AT5G12140
fragaria_vesca	FvH4_7g04180
malus_domestica	MD02G1274700.v1.1 MD07G1042400.v1.1
prunus_persica	Prupe.2G044800_v2.0.a1 Prupe.2G047300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0328521
rosa_laevigata	RLG00000016813
rosa_multiflora	Rmu_sc0000725.1_g000003 Rmu_sc0001563.1_g000009 Rmu_sc0006331.1_g000001 Rmu_sc0016254.1_g000002
rosa_roxburghii	Rroxscaffold_4G00321540
rosa_rugosa	Rorug01G0074300 Rorug01G0074800 Rorug05G0191000
rosa_samantha	Rh1AG092600 Rh1AG092800 Rh1AG093400 Rh1BG072900 Rh1BG074600 Rh1CG089700 Rh1CG090500 Rh1DG095800 Rh1DG096300 Rh1DG096500
rosa_wichuraiana	Rw1G007240 Rw1G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	6, 52
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	2 cut(s)	320, 461
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	195, 228, 391
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	6 cut(s)	253, 271, 305, 374, 424, 476
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	3 cut(s)	211, 370, 439
AluI	AGCT	3 cut(s)	211, 370, 439
Alw21I	GWGCWC	2 cut(s)	93, 483
Alw26I	GTCTC	1 cut(s)	444
Alw44I	GTGCAC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	3 cut(s)	3, 186, 219
ApaLI	GTGCAC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	169, 412
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	2 cut(s)	93, 483
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	2 cut(s)	188, 511
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	444
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	6, 52, 312
BlsI	GCNGC	3 cut(s)	7, 53, 313
Bme1390I	CCNGG	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	40, 499
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	137, 282
BsaJI	CCNNGG	4 cut(s)	34, 99, 222, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 228, 391
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	4 cut(s)	34, 99, 222, 239
BseLI	CCNNNNNNNGG	3 cut(s)	195, 228, 391
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	5, 188, 221
BshNI	GGYRCC	1 cut(s)	497
BsiHKAI	GWGCWC	2 cut(s)	93, 483
BslI	CCNNNNNNNGG	3 cut(s)	195, 228, 391
BsmAI	GTCTC	1 cut(s)	444
BsmBI	CGTCTC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	5, 188, 221
Bsp1286I	GDGCHC	2 cut(s)	93, 483
Bsp143I	GATC	2 cut(s)	292, 409
BspACI	CCGC	2 cut(s)	6, 52
BspANI	GGCC	3 cut(s)	5, 188, 221
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	40, 499
BspPI	GGATC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	497
BspTI	CTTAAG	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	34, 99, 222, 239
BssMI	GATC	2 cut(s)	292, 409
BssT1I	CCWWGG	4 cut(s)	34, 99, 222, 239
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	3 cut(s)	323, 437, 453
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	295, 412
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	2 cut(s)	292, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 320, 436
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	5, 188, 221
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	73
CciI	TCATGA	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	290, 320, 413, 427
CviQI	GTAC	1 cut(s)	169
DpnI	GATC	2 cut(s)	294, 411
DpnII	GATC	2 cut(s)	292, 409
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	323, 437, 453
EarI	CTCTTC	3 cut(s)	323, 437, 453
Eco130I	CCWWGG	4 cut(s)	34, 99, 222, 239
Eco57I	CTGAAG	2 cut(s)	320, 461
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	4 cut(s)	34, 99, 222, 239
ErhI	CCWWGG	4 cut(s)	34, 99, 222, 239
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	4 cut(s)	293, 323, 416, 430
FaiI	YATR	7 cut(s)	291, 321, 390, 414, 428, 468, 535
FatI	CATG	4 cut(s)	289, 319, 412, 426
Fnu4HI	GCNGC	3 cut(s)	6, 52, 312
Fsp4HI	GCNGC	3 cut(s)	6, 52, 312
GluI	GCNGC	3 cut(s)	6, 52, 312
HaeIII	GGCC	3 cut(s)	5, 188, 221
Hin1II	CATG	4 cut(s)	293, 323, 416, 430
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	21, 29, 511
HphI	GGTGA	2 cut(s)	169, 412
Hpy166II	GTNNAC	2 cut(s)	169, 481
Hpy188I	TCNGA	5 cut(s)	17, 43, 204, 510, 516
Hpy188III	TCNNGA	3 cut(s)	290, 305, 374
Hpy8I	GTNNAC	2 cut(s)	169, 481
Hpy99I	CGWCG	3 cut(s)	14, 17, 65
HpyAV	CCTTC	2 cut(s)	344, 488
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	311, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 320, 436
Hsp92II	CATG	4 cut(s)	293, 323, 416, 430
Kzo9I	GATC	2 cut(s)	292, 409
LguI	GCTCTTC	1 cut(s)	323
LpnPI	CCDG	4 cut(s)	144, 214, 248, 275
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	298
MalI	GATC	2 cut(s)	294, 411
MboI	GATC	2 cut(s)	292, 409
MboII	GAAGA	7 cut(s)	148, 217, 340, 419, 454, 467, 470
MhlI	GDGCHC	2 cut(s)	93, 483
MluCI	AATT	2 cut(s)	266, 349
MseI	TTAA	2 cut(s)	234, 435
MspCI	CTTAAG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	77, 320, 436
NdeII	GATC	2 cut(s)	292, 409
NlaIII	CATG	4 cut(s)	293, 323, 416, 430
NlaIV	GGNNCC	2 cut(s)	40, 499
NspI	RCATGY	1 cut(s)	430
PagI	TCATGA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	323
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	21, 29, 511
PflMI	CCANNNNNTGG	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	7, 53, 313
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	40, 499
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	234, 435
SatI	GCNGC	3 cut(s)	6, 52, 312
Sau3AI	GATC	2 cut(s)	292, 409
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	93, 483
SetI	ASST	8 cut(s)	40, 69, 213, 228, 372, 402, 441, 499
SfaNI	GCATC	1 cut(s)	298
SmlI	CTYRAG	3 cut(s)	116, 297, 434
SmoI	CTYRAG	3 cut(s)	116, 297, 434
Sse9I	AATT	2 cut(s)	266, 349
SsiI	CCGC	2 cut(s)	6, 52
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	4 cut(s)	34, 99, 222, 239
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	266, 349
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	8, 54
TfiI	GAWTC	3 cut(s)	21, 29, 511
Tru1I	TTAA	2 cut(s)	234, 435
Tru9I	TTAA	2 cut(s)	234, 435
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	342, 507
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.