Rmu_sc0000738.1_g000003

Phosphoinositide phospholipase C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000738.1
OG0012680
Physical Location & Seq
Reverse (-)
11348 .. 13751
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
atgaattattttcctttccgcaaaccaaacgagaccttaaggtactacttattaacacttgaaaataagcaggacaatgacgaagatgatcgggatgaagatgaggagaatgctgatctacaatataagcagttaattgcaatccatgctggaaaaccgaaaggggggttggatatgttgcatattgatcccaagaaagtcagacgtcttagcttgagcgagcaacaactcgaacgtgcatcaaaaactcgtggaacagatattgttaggaagtgcatgtctagctccatattctctcttctggataaacaggttaaagtttacatgggtgaaggatggcattcagacttccaccgcacgcactttgatctcttctctccaccggacttttttgtgagggttggaattgctggagtaccaatggacacactaatggaggagactaagacaatcgaagacgagtggattccagtgtggaatcaggagttcaacttcccattgagtgttccagaactagctgtgcttagaattgaagttaaagagtacgacagttctggaaatcatgactttggtggccaaatatgtctgccaatatcagagcttagaactgggttcagagcagttcctctgcatgataaaaaaggggtaaggtataaatctgtgaagcttcttatgaaatttgagtttgaaagtcctgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004629 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0008081 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009553 GO:0009555 GO:0009556 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010600 GO:0010601 GO:0010817 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0034293 GO:0042221 GO:0042578 GO:0042742 GO:0043207 GO:0043934 GO:0044464 GO:0044703 GO:0046885 GO:0046886 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071944 GO:0090354 GO:0090355 GO:0090567 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

233

Amino Acids

27.15

Weight (kDa)

5.47

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 105 - 203 8.9e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
AciI CCGC 2 cut(s) 19, 355
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 3 cut(s) 44, 417, 545
AfiI CCNNNNNNNGG 1 cut(s) 164
AflII CTTAAG 1 cut(s) 37
AgsI TTSAA 4 cut(s) 62, 490, 533, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 5 cut(s) 213, 285, 518, 601, 667
AluI AGCT 5 cut(s) 213, 285, 518, 601, 667
Alw26I GTCTC 2 cut(s) 26, 434
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 574
ApoI RAATTY 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 341
BalI TGGCCA 1 cut(s) 576
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 462
BccI CCATC 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 26, 434
BfaI CTAG 2 cut(s) 282, 515
BfrI CTTAAG 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 248
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 470, 613
BseGI GGATG 2 cut(s) 100, 341
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 2 cut(s) 470, 613
BseRI GAGGAG 2 cut(s) 119, 452
BshFI GGCC 1 cut(s) 576
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 26, 434
BsmI GAATGC 2 cut(s) 115, 340
BsnI GGCC 1 cut(s) 576
Bso31I GGTCTC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 88, 115, 187, 367
BspACI CCGC 2 cut(s) 19, 355
BspANI GGCC 1 cut(s) 576
BspCNI CTCAG 1 cut(s) 688
BspHI TCATGA 1 cut(s) 562
BspPI GGATC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 26
BsrI ACTGG 2 cut(s) 470, 613
BssMI GATC 4 cut(s) 88, 115, 187, 367
BssNI GRCGYC 1 cut(s) 205
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 2 cut(s) 303, 377
BstACI GRCGYC 1 cut(s) 205
BstAFI CTTAAG 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 221, 359
BstDEI CTNAG 5 cut(s) 209, 444, 524, 602, 696
BstF5I GGATG 2 cut(s) 100, 341
BstKTI GATC 4 cut(s) 91, 118, 190, 370
BstMAI GTCTC 2 cut(s) 26, 434
BstMBI GATC 4 cut(s) 88, 115, 187, 367
BstMWI GCNNNNNNNGC 2 cut(s) 146, 282
BstNSI RCATGY 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 462
BsuRI GGCC 1 cut(s) 576
BtsCI GGATG 2 cut(s) 100, 341
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 221, 359
CciI TCATGA 1 cut(s) 562
Csp6I GTAC 3 cut(s) 43, 416, 544
CviAII CATG 5 cut(s) 146, 277, 325, 563, 632
CviJI RGCY 6 cut(s) 213, 285, 518, 576, 601, 667
CviKI_1 RGCY 6 cut(s) 213, 285, 518, 576, 601, 667
CviQI GTAC 3 cut(s) 43, 416, 544
DdeI CTNAG 5 cut(s) 209, 444, 524, 602, 696
DpnI GATC 4 cut(s) 90, 117, 189, 369
DpnII GATC 4 cut(s) 88, 115, 187, 367
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 303, 377
EarI CTCTTC 2 cut(s) 303, 377
Eco31I GGTCTC 1 cut(s) 26
FaeI CATG 5 cut(s) 149, 280, 328, 566, 635
FatI CATG 5 cut(s) 145, 276, 324, 562, 631
FokI GGATG 2 cut(s) 107, 348
FspBI CTAG 2 cut(s) 282, 515
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 576
HapII CCGG 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 5 cut(s) 149, 280, 328, 566, 635
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 2 cut(s) 466, 478
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 203, 346, 598, 617
Hpy188III TCNNGA 7 cut(s) 92, 302, 482, 509, 555, 563, 695
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 205, 235
HpyCH4V TGCA 5 cut(s) 140, 181, 239, 276, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 282
HpyF3I CTNAG 5 cut(s) 209, 444, 524, 602, 696
HpySE526I ACGT 2 cut(s) 205, 235
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 5 cut(s) 149, 280, 328, 566, 635
Kzo9I GATC 4 cut(s) 88, 115, 187, 367
LmnI GCTCC 1 cut(s) 290
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 282, 515
MaeII ACGT 2 cut(s) 205, 235
MalI GATC 4 cut(s) 90, 117, 189, 369
MboI GATC 4 cut(s) 88, 115, 187, 367
MboII GAAGA 5 cut(s) 95, 110, 290, 364, 467
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 5 cut(s) 4, 135, 405, 528, 677
MluNI TGGCCA 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 150, 382
MnlI CCTC 4 cut(s) 97, 390, 430, 636
Mox20I TGGCCA 1 cut(s) 576
MscI TGGCCA 1 cut(s) 576
MseI TTAA 5 cut(s) 38, 53, 134, 315, 537
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 576
MspCI CTTAAG 1 cut(s) 37
MspI CCGG 1 cut(s) 383
Mva1269I GAATGC 2 cut(s) 115, 340
MwoI GCNNNNNNNGC 2 cut(s) 146, 282
NdeII GATC 4 cut(s) 88, 115, 187, 367
NlaIII CATG 5 cut(s) 149, 280, 328, 566, 635
NspI RCATGY 1 cut(s) 280
PagI TCATGA 1 cut(s) 562
PctI GAATGC 2 cut(s) 115, 340
PfeI GAWTC 2 cut(s) 466, 478
RsaI GTAC 3 cut(s) 44, 417, 545
RsaNI GTAC 3 cut(s) 43, 416, 544
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 5 cut(s) 38, 53, 134, 315, 537
Sau3AI GATC 4 cut(s) 88, 115, 187, 367
SfaNI GCATC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 2 cut(s) 37, 214
SmoI CTYRAG 2 cut(s) 37, 214
Sse9I AATT 5 cut(s) 4, 135, 405, 528, 677
SsiI CCGC 2 cut(s) 19, 355
SspMI CTAG 2 cut(s) 282, 515
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 208, 238
TaqI TCGA 2 cut(s) 231, 453
TasI AATT 5 cut(s) 4, 135, 405, 528, 677
TfiI GAWTC 2 cut(s) 466, 478
Tru1I TTAA 5 cut(s) 38, 53, 134, 315, 537
Tru9I TTAA 5 cut(s) 38, 53, 134, 315, 537
TscAI CASTG 1 cut(s) 477
TspDTI ATGAA 3 cut(s) 17, 111, 689
TspRI CASTG 1 cut(s) 477
Vha464I CTTAAG 1 cut(s) 37
XapI RAATTY 1 cut(s) 677
XceI RCATGY 1 cut(s) 280
XspI CTAG 2 cut(s) 282, 515
ZraI GACGTC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.