Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000778.1

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Reverse (-)

18356 .. 22398

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggccctctcttccgcattttggcgcctaagtctcctctcaaaaccctcagtttctctcagagctctaaaacccttcaagcccaaaccaaggcccatgtcctcgcttcccatttcttctaaatcaaattcctccaacttctccgcatcaaagaatccaacttttctagacccaaaaactcgctgcgacgacaccgccgccgccgtcgtgaaaagcaacggtgaaattctcagccaagttatttcttctcaggcagatttgcttgctcaatatggaggtgttgctcccaaaatggcagaagaagcgcacttgcaagtgattgatcgggttgtgcaagaagcgctcaacaaagctaatttaaccgagagagatttgtctgcagttgctgttaccattggtcctggtttaagcctttgtcttcgtgttggtgtgcggaaagctcgtaaaattgctggtacttttagcttaccaattattggtgtacatcacatggaggctcatgctcttgtagccaggttaactgaacaagaactacaatttcctttcatggctctgcttatttcaggaggacacaatgttctcatccttgctcgtgatcttggtcattatgtacaacttgggaccacaatagatgatgctattggtgaggcatatgataagatagcaaaatggcttggtcttgacttgaggagaagtggtgggccagctatagaagagcttgcccgagagggtgatgcaaaatcaatcaaattctcgagagttgcagtattacatctgaaagaaaggtgtgaacgagcaattgaatgggctttgaagattgaaccttctgtaaaacatatggttgtgtctggtggtgttgcatcaaatcaatatgttcgggctcaacttgatcaggttgtcaagaaaaacaacttacaacttgtatgccctcctcccagcctttgtacagacaacggtgtaatggtggcatggactggcattgagaacttttgtatgggaagatttgatccaccaccacctgcagatgaacctgaagatattgagtttgatctgcggccaaggtggccattgggggaagaatacgctgagggaaggagtgaagctcggtcaatgagaacggcccgcattcaaccgtctctgacatctctcgtccaagcatctttgcaacagcaactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

392

Amino Acids

42.83

Weight (kDa)

8.66

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	75 - 324	2.2e-71	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1027
Acc36I	ACCTGC	1 cut(s)	1027
AccB1I	GGYRCC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	8 cut(s)	15, 144, 195, 198, 201, 433, 1054, 1123
AclWI	GGATC	1 cut(s)	1001
AcoI	YGGCCR	2 cut(s)	1055, 1064
AcsI	RAATTY	3 cut(s)	127, 225, 749
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	4 cut(s)	457, 483, 612, 946
AfeI	AGCGCT	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	21, 90, 476
AgsI	TTSAA	5 cut(s)	79, 803, 814, 821, 1130
AjnI	CCWGG	2 cut(s)	400, 512
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
AluBI	AGCT	7 cut(s)	65, 353, 440, 465, 707, 718, 1103
AluI	AGCT	7 cut(s)	65, 353, 440, 465, 707, 718, 1103
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	38, 1140
AlwI	GGATC	1 cut(s)	1001
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	2 cut(s)	723, 754
Aor51HI	AGCGCT	1 cut(s)	342
AoxI	GGCC	6 cut(s)	3, 92, 701, 1055, 1064, 1119
ApeKI	GCWGC	1 cut(s)	183
ApoI	RAATTY	3 cut(s)	127, 225, 749
AspLEI	GCGC	3 cut(s)	27, 307, 343
AspS9I	GGNCC	6 cut(s)	4, 93, 398, 621, 701, 1120
AsuHPI	GGTGA	3 cut(s)	233, 656, 743
AvaI	CYCGRG	2 cut(s)	723, 754
AvaII	GGWCC	2 cut(s)	398, 621
BalI	TGGCCA	1 cut(s)	1066
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	2 cut(s)	67, 883
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	67
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	188, 1134
BciT130I	CCWGG	2 cut(s)	402, 514
BclI	TGATCA	1 cut(s)	889
BcoDI	GTCTC	2 cut(s)	38, 1140
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	3 cut(s)	378, 708, 1020
BfoI	RGCGCY	2 cut(s)	28, 344
BfuAI	ACCTGC	1 cut(s)	1027
BglI	GCCNNNNNGGC	1 cut(s)	1063
BisI	GCNGC	4 cut(s)	184, 198, 201, 1055
BlsI	GCNGC	4 cut(s)	185, 199, 202, 1056
Bme1390I	CCNGG	2 cut(s)	402, 514
Bme18I	GGWCC	2 cut(s)	398, 621
BmeT110I	CYCGRG	2 cut(s)	723, 754
BmgT120I	GGNCC	6 cut(s)	4, 93, 398, 621, 701, 1120
BmiI	GGNNCC	2 cut(s)	26, 622
BmrFI	CCNGG	2 cut(s)	402, 514
BmsI	GCATC	5 cut(s)	155, 625, 724, 869, 1166
BpiI	GAAGAC	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	1087, 1119
Bpu10I	CCTNAGC	1 cut(s)	1086
BpuEI	CTTGAG	1 cut(s)	706
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	89, 1058
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 90, 476
Bse1I	ACTGG	1 cut(s)	979
BseBI	CCWGG	2 cut(s)	402, 514
BseDI	CCNNGG	2 cut(s)	89, 1058
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	21, 90, 476
BseMII	CTCAG	5 cut(s)	63, 73, 244, 263, 1077
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	3 cut(s)	26, 703, 921
BseXI	GCAGC	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	935
BshFI	GGCC	6 cut(s)	5, 94, 703, 1057, 1066, 1121
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	723, 754
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	3 cut(s)	21, 90, 476
BsmAI	GTCTC	2 cut(s)	38, 1140
BsmBI	CGTCTC	1 cut(s)	1140
BsmFI	GGGAC	1 cut(s)	634
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	6 cut(s)	5, 94, 703, 1057, 1066, 1121
BsoBI	CYCGRG	2 cut(s)	723, 754
Bsp1286I	GDGCHC	2 cut(s)	67, 883
Bsp1407I	TGTACA	3 cut(s)	481, 610, 944
Bsp143I	GATC	5 cut(s)	322, 595, 889, 1006, 1048
BspACI	CCGC	8 cut(s)	15, 144, 195, 198, 201, 433, 1054, 1123
BspANI	GGCC	6 cut(s)	5, 94, 703, 1057, 1066, 1121
BspCNI	CTCAG	5 cut(s)	62, 72, 243, 262, 1078
BspLI	GGNNCC	2 cut(s)	26, 622
BspMAI	CTGCAG	2 cut(s)	382, 1024
BspMI	ACCTGC	1 cut(s)	1027
BspPI	GGATC	1 cut(s)	1001
BspQI	GCTCTTC	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	24
BsrGI	TGTACA	3 cut(s)	481, 610, 944
BsrI	ACTGG	1 cut(s)	979
BssECI	CCNNGG	2 cut(s)	89, 1058
BssMI	GATC	5 cut(s)	322, 595, 889, 1006, 1048
BssNI	GRCGYC	1 cut(s)	25
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	89, 1058
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	402, 514
Bst4CI	ACNGT	3 cut(s)	221, 956, 1134
Bst6I	CTCTTC	2 cut(s)	16, 708
BstACI	GRCGYC	1 cut(s)	25
BstAUI	TGTACA	3 cut(s)	481, 610, 944
BstC8I	GCNNGC	4 cut(s)	264, 705, 720, 1123
BstDEI	CTNAG	6 cut(s)	29, 49, 59, 230, 249, 1086
BstF5I	GGATG	1 cut(s)	582
BstH2I	RGCGCY	2 cut(s)	28, 344
BstHHI	GCGC	3 cut(s)	27, 307, 343
BstKTI	GATC	5 cut(s)	325, 598, 892, 1009, 1051
BstMAI	GTCTC	2 cut(s)	38, 1140
BstMBI	GATC	5 cut(s)	322, 595, 889, 1006, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 340, 509, 1063
BstNI	CCWGG	2 cut(s)	402, 514
BstSCI	CCNGG	2 cut(s)	400, 512
BstSFI	CTRYAG	3 cut(s)	378, 708, 1020
BstV1I	GCAGC	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	410
BsuRI	GGCC	6 cut(s)	5, 94, 703, 1057, 1066, 1121
BtsCI	GGATG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	1027
Cac8I	GCNNGC	4 cut(s)	264, 705, 720, 1123
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	3 cut(s)	27, 307, 343
Cfr13I	GGNCC	6 cut(s)	4, 93, 398, 621, 701, 1120
Csp6I	GTAC	4 cut(s)	456, 482, 611, 945
CviAII	CATG	5 cut(s)	97, 490, 500, 547, 969
CviQI	GTAC	4 cut(s)	456, 482, 611, 945
DdeI	CTNAG	6 cut(s)	29, 49, 59, 230, 249, 1086
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	5 cut(s)	324, 597, 891, 1008, 1050
DpnII	GATC	5 cut(s)	322, 595, 889, 1006, 1048
EaeI	YGGCCR	2 cut(s)	1055, 1064
Eam1104I	CTCTTC	2 cut(s)	16, 708
EarI	CTCTTC	2 cut(s)	16, 708
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	89, 1058
Eco24I	GRGCYC	2 cut(s)	67, 883
Eco47I	GGWCC	2 cut(s)	398, 621
Eco47III	AGCGCT	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	2 cut(s)	723, 754
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	400, 512
EcoT14I	CCWWGG	2 cut(s)	89, 1058
EcoT38I	GRGCYC	2 cut(s)	67, 883
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	89, 1058
Esp3I	CGTCTC	1 cut(s)	1140
FaeI	CATG	5 cut(s)	100, 493, 503, 550, 972
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	5 cut(s)	96, 489, 499, 546, 968
FauI	CCCGC	1 cut(s)	1130
FauNDI	CATATG	2 cut(s)	652, 837
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	4 cut(s)	184, 198, 201, 1055
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	2 cut(s)	67, 883
Fsp4HI	GCNGC	4 cut(s)	184, 198, 201, 1055
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	3 cut(s)	26, 306, 342
GluI	GCNGC	4 cut(s)	184, 198, 201, 1055
GsaI	CCCAGC	1 cut(s)	939
HaeII	RGCGCY	2 cut(s)	28, 344
HaeIII	GGCC	6 cut(s)	5, 94, 703, 1057, 1066, 1121
HhaI	GCGC	3 cut(s)	27, 307, 343
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	5 cut(s)	100, 493, 503, 550, 972
Hin6I	GCGC	3 cut(s)	25, 305, 341
HinP1I	GCGC	3 cut(s)	25, 305, 341
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	1 cut(s)	154
HpaI	GTTAAC	1 cut(s)	519
HphI	GGTGA	3 cut(s)	233, 656, 743
Hpy166II	GTNNAC	3 cut(s)	482, 519, 791
Hpy188I	TCNGA	3 cut(s)	62, 777, 1140
Hpy188III	TCNNGA	8 cut(s)	167, 208, 564, 593, 680, 754, 756, 901
Hpy8I	GTNNAC	3 cut(s)	482, 519, 791
Hpy99I	CGWCG	2 cut(s)	191, 209
HpyAV	CCTTC	3 cut(s)	85, 834, 1086
HpyCH4III	ACNGT	3 cut(s)	221, 956, 1134
HpyCH4V	TGCA	8 cut(s)	313, 334, 380, 737, 764, 860, 1022, 1165
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 340, 509, 1063
HpyF3I	CTNAG	6 cut(s)	29, 49, 59, 230, 249, 1086
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	5 cut(s)	100, 493, 503, 550, 972
HspAI	GCGC	3 cut(s)	25, 305, 341
KasI	GGCGCC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	889
KspAI	GTTAAC	1 cut(s)	519
Kzo9I	GATC	5 cut(s)	322, 595, 889, 1006, 1048
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	5 cut(s)	155, 625, 724, 869, 1166
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	5 cut(s)	324, 597, 891, 1008, 1050
MboI	GATC	5 cut(s)	322, 595, 889, 1006, 1048
MfeI	CAATTG	1 cut(s)	798
MhlI	GDGCHC	2 cut(s)	67, 883
MlsI	TGGCCA	1 cut(s)	1066
MluCI	AATT	8 cut(s)	127, 225, 355, 447, 471, 536, 749, 798
MluNI	TGGCCA	1 cut(s)	1066
Mly113I	GGCGCC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	159, 182
Mox20I	TGGCCA	1 cut(s)	1066
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	3 cut(s)	359, 407, 518
Msp20I	TGGCCA	1 cut(s)	1066
MspR9I	CCNGG	2 cut(s)	402, 514
MunI	CAATTG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	1125
MvaI	CCWGG	2 cut(s)	402, 514
MwoI	GCNNNNNNNGC	4 cut(s)	302, 340, 509, 1063
NarI	GGCGCC	1 cut(s)	25
NdeI	CATATG	2 cut(s)	652, 837
NdeII	GATC	5 cut(s)	322, 595, 889, 1006, 1048
NlaIII	CATG	5 cut(s)	100, 493, 503, 550, 972
NlaIV	GGNNCC	2 cut(s)	26, 622
PaeR7I	CTCGAG	1 cut(s)	754
PaqCI	CACCTGC	1 cut(s)	1027
PciSI	GCTCTTC	1 cut(s)	708
PctI	GAATGC	1 cut(s)	1125
PfeI	GAWTC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	4 cut(s)	185, 199, 202, 1056
PluTI	GGCGCC	1 cut(s)	28
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	400, 512
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	2 cut(s)	400, 512
PspN4I	GGNNCC	2 cut(s)	26, 622
PspPI	GGNCC	6 cut(s)	4, 93, 398, 621, 701, 1120
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PstI	CTGCAG	2 cut(s)	382, 1024
PstNI	CAGNNNCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	457, 483, 612, 946
RsaNI	GTAC	4 cut(s)	456, 482, 611, 945
SacI	GAGCTC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	359, 407, 518
SatI	GCNGC	4 cut(s)	184, 198, 201, 1055
Sau3AI	GATC	5 cut(s)	322, 595, 889, 1006, 1048
Sau96I	GGNCC	6 cut(s)	4, 93, 398, 621, 701, 1120
ScrFI	CCNGG	2 cut(s)	402, 514
SduI	GDGCHC	2 cut(s)	67, 883
SfaNI	GCATC	5 cut(s)	155, 625, 724, 869, 1166
SfcI	CTRYAG	3 cut(s)	378, 708, 1020
SfiI	GGCCNNNNNGGCC	1 cut(s)	1063
SfoI	GGCGCC	1 cut(s)	26
Sfr274I	CTCGAG	1 cut(s)	754
SinI	GGWCC	2 cut(s)	398, 621
SlaI	CTCGAG	1 cut(s)	754
SmlI	CTYRAG	2 cut(s)	685, 754
SmoI	CTYRAG	2 cut(s)	685, 754
Sse9I	AATT	8 cut(s)	127, 225, 355, 447, 471, 536, 749, 798
SsiI	CCGC	8 cut(s)	15, 144, 195, 198, 201, 433, 1054, 1123
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	400, 512
StyI	CCWWGG	2 cut(s)	89, 1058
TaaI	ACNGT	3 cut(s)	221, 956, 1134
TaqI	TCGA	1 cut(s)	755
TaqII	GACCGA	1 cut(s)	1095
TasI	AATT	8 cut(s)	127, 225, 355, 447, 471, 536, 749, 798
TatI	WGTACW	3 cut(s)	481, 610, 944
TauI	GCSGC	3 cut(s)	200, 203, 1057
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	359, 407, 518
Tru9I	TTAA	3 cut(s)	359, 407, 518
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	2 cut(s)	535, 1041
Van91I	CCANNNNNTGG	1 cut(s)	476
VpaK11BI	GGWCC	2 cut(s)	398, 621
XapI	RAATTY	3 cut(s)	127, 225, 749
XbaI	TCTAGA	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	754
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.