Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000851.1

Orthogroup ID

OG0018224

Physical Location & Seq

Genomic Coordinates Forward (+)

48040 .. 49324

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgctctctctccacccatccaattcccattactactgccaccgatctggtgagattccaatcgatcaaagcttgcaaaacctcaaaactgcgccgccacgcttgaagacgaatacaatgacgatgaagctccaatcggagctacgtcactggagtccaactcagatctctccaattctctactcatctcagaaaccaaatgcttgcagcgaggcctctagtttctttgtgaactcaacctcgtgctcgtactttggcagcgagatttcgtgcgagtcaggcagattctcagttggatcggagagtgaggtgaggtcgagtttaaagaagagaaagttaggcgaatccaaccaaatcctagaagacccttccagactccgtgatagtagcttttgtaacctcgccggagttgccggaaatctcatcagagtagcttttggtgttagctacagtagcttttgtggtccccagaagttggccggagacccgccagagttgaccggagacctcgccggagaggagagagagaatgattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000724 GO:0000725 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0033554 GO:0034641 GO:0035825 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0050896 GO:0051026 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

179

Amino Acids

19.69

Weight (kDa)

6.42

Isoelectric Point (pI)

67.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018224)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000006726 RLG00000014746 RLG00000023318
rosa_multiflora	Rmu_co7984262.1_g000001 Rmu_sc0000851.1_g000016 Rmu_sc0008109.1_g000005 Rmu_sc0009114.1_g000002 Rmu_sc0009290.1_g000001 Rmu_sc0010911.1_g000006
rosa_samantha	Rh1DG123000 Rh2DG286600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AciI	CCGC	2 cut(s)	95, 488
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	477
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	7 cut(s)	72, 130, 142, 390, 434, 447, 456
AluI	AGCT	7 cut(s)	72, 130, 142, 390, 434, 447, 456
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	477, 498
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	2 cut(s)	213, 477
ApeKI	GCWGC	2 cut(s)	207, 258
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	62, 322
AvaII	GGWCC	1 cut(s)	464
BauI	CACGAG	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	113, 369
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	219, 270
BccI	CCATC	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	477, 498
BfaI	CTAG	2 cut(s)	219, 359
BfmI	CTRYAG	1 cut(s)	448
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	3 cut(s)	95, 208, 259
BlsI	GCNGC	3 cut(s)	96, 209, 260
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	466
BpiI	GAAGAC	2 cut(s)	113, 369
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpmI	CTGGAG	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	59
BsaI	GGTCTC	2 cut(s)	477, 498
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	63
BseGI	GGATG	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	3 cut(s)	176, 203, 303
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	2 cut(s)	219, 270
BshFI	GGCC	2 cut(s)	215, 479
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	5 cut(s)	405, 414, 480, 501, 513
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	477, 498
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	215, 479
Bso31I	GGTCTC	2 cut(s)	477, 498
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	4 cut(s)	44, 64, 165, 296
BspACI	CCGC	2 cut(s)	95, 488
BspANI	GGCC	2 cut(s)	215, 479
BspCNI	CTCAG	3 cut(s)	175, 202, 302
BspDI	ATCGAT	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	1 cut(s)	304
BspTNI	GGTCTC	2 cut(s)	477, 498
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	4 cut(s)	44, 64, 165, 296
BssSI	CACGAG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	74, 205
BstDEI	CTNAG	3 cut(s)	162, 189, 289
BstF5I	GGATG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	4 cut(s)	47, 67, 168, 299
BstMAI	GTCTC	2 cut(s)	477, 498
BstMBI	GATC	4 cut(s)	44, 64, 165, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 410, 453
BstSFI	CTRYAG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	219, 270
BstV2I	GAAGAC	2 cut(s)	113, 369
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	215, 479
BsuTUI	ATCGAT	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	74, 205
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	250
CviJI	RGCY	9 cut(s)	72, 130, 142, 215, 390, 434, 447, 456, 479
CviKI_1	RGCY	9 cut(s)	72, 130, 142, 215, 390, 434, 447, 456, 479
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	162, 189, 289
DpnI	GATC	4 cut(s)	46, 66, 167, 298
DpnII	GATC	4 cut(s)	44, 64, 165, 296
DraI	TTTAAA	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco147I	AGGCCT	1 cut(s)	215
Eco31I	GGTCTC	2 cut(s)	477, 498
Eco47I	GGWCC	1 cut(s)	464
FaqI	GGGAC	1 cut(s)	450
FauI	CCCGC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	95, 208, 259
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	3 cut(s)	95, 208, 259
FspBI	CTAG	2 cut(s)	219, 359
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	95, 208, 259
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	215, 479
HapII	CCGG	5 cut(s)	405, 414, 480, 501, 513
HhaI	GCGC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	6 cut(s)	55, 154, 275, 285, 344, 375
HpaII	CCGG	5 cut(s)	405, 414, 480, 501, 513
HphI	GGTGA	2 cut(s)	62, 322
Hpy166II	GTNNAC	2 cut(s)	232, 498
Hpy188I	TCNGA	5 cut(s)	139, 165, 192, 301, 428
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	2 cut(s)	232, 498
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	76, 207
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 410, 453
HpyF3I	CTNAG	3 cut(s)	162, 189, 289
HpySE526I	ACGT	1 cut(s)	145
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	44, 64, 165, 296
LmnI	GCTCC	2 cut(s)	135, 139
Lsp1109I	GCAGC	2 cut(s)	219, 270
MaeI	CTAG	2 cut(s)	219, 359
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	146, 395
MalI	GATC	4 cut(s)	46, 66, 167, 298
MboI	GATC	4 cut(s)	44, 64, 165, 296
MboII	GAAGA	3 cut(s)	118, 340, 374
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	2 cut(s)	22, 174
MlyI	GAGTC	3 cut(s)	163, 284, 369
MmeI	TCCRAC	3 cut(s)	182, 274, 372
MnlI	CCTC	9 cut(s)	92, 205, 226, 250, 301, 306, 410, 511, 518
MseI	TTAA	1 cut(s)	323
MspI	CCGG	5 cut(s)	405, 414, 480, 501, 513
MwoI	GCNNNNNNNGC	3 cut(s)	279, 410, 453
NdeII	GATC	4 cut(s)	44, 64, 165, 296
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	55, 285, 344
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	96, 209, 260
PleI	GAGTC	3 cut(s)	162, 283, 369
PpsI	GAGTC	3 cut(s)	162, 283, 369
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	95, 208, 259
Sau3AI	GATC	4 cut(s)	44, 64, 165, 296
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	163, 284, 369
SduI	GDGCHC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	2 cut(s)	22, 174
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	2 cut(s)	95, 488
SspMI	CTAG	2 cut(s)	219, 359
StuI	AGGCCT	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	63, 317
TasI	AATT	2 cut(s)	22, 174
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	3 cut(s)	55, 285, 344
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	207, 258
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	2 cut(s)	219, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.