Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000882.1

Orthogroup ID

OG0017752

Physical Location & Seq

Genomic Coordinates Reverse (-)

189359 .. 193829

Gene Structure 4471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000882.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgttgggcttcggtgaattggtttctcgctgccatagtcggcggagtgagttggtgtcacaagttcagcgtcgtcgtgctatggtcatggcggtgcaacggggttctgatcgggctaacctgatctgggttgggtcctttggatcctatctaggggagagtctgattggtagaggcagagctcacccatgccgtttcagcgatggcgtgttgaatgcagaggtccggcgactctgcatatgtgaatgcccagaaaacgaatttccagaaccttttaaaaggcgcttgcaccgtggccttacatctgacagtttggtttgtcaagaggaaaagcttcagggttctgttgaccgcacgttagacagtagagttttcagaggctggattgatacagataacccttggataattgatgatgagaatggtgagatgacaaatgtgaaccttctactaaaccctgaacgttacactggctacacaggtccatcggctagaaggatatgggatgctgtttactctgaaaattgcccaaaatgtgtgtttaatattctgttagatcactatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

189

Amino Acids

21.67

Weight (kDa)

6.89

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017752)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G145200_v2.0.a1 Prupe.4G145200_v2.0.a1
rosa_multiflora	Rmu_sc0000689.1_g000027 Rmu_sc0000882.1_g000037 Rmu_sc0002522.1_g000031 Rmu_sc0006065.1_g000014 Rmu_sc0014478.1_g000016
rosa_rugosa	Rorug02G0232200 Rorug06G0256800
rosa_samantha	Rh2CG037300 Rh5AG086600 Rh5AG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	43, 92, 352
AclI	AACGTT	1 cut(s)	463
AclWI	GGATC	2 cut(s)	138, 151
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	127, 153
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	2 cut(s)	182, 334
AluI	AGCT	2 cut(s)	182, 334
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	138, 151
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	135, 223, 482
AsuHPI	GGTGA	3 cut(s)	26, 176, 437
AvaII	GGWCC	3 cut(s)	135, 223, 482
BamHI	GGATCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	197, 493
BceAI	ACGGC	1 cut(s)	177
BfaI	CTAG	2 cut(s)	152, 492
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme18I	GGWCC	3 cut(s)	135, 223, 482
BmgT120I	GGNCC	3 cut(s)	135, 223, 482
BmiI	GGNNCC	2 cut(s)	136, 145
BmsI	GCATC	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	292, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 153
Bse1I	ACTGG	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	292, 401
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	127, 153
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	127, 153
BsmI	GAATGC	2 cut(s)	220, 251
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	109, 123, 143, 556
BspACI	CCGC	3 cut(s)	43, 92, 352
BspANI	GGCC	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	136, 145
BspPI	GGATC	2 cut(s)	138, 151
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	292, 401
BssMI	GATC	4 cut(s)	109, 123, 143, 556
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	3 cut(s)	293, 311, 365
BstC8I	GCNNGC	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	4 cut(s)	112, 126, 146, 559
BstMBI	GATC	4 cut(s)	109, 123, 143, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	287
CaiI	CAGNNNCTG	1 cut(s)	381
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	135, 223, 482
CseI	GACGC	1 cut(s)	59
CviAII	CATG	2 cut(s)	88, 189
CviJI	RGCY	8 cut(s)	9, 116, 182, 297, 334, 381, 474, 491
CviKI_1	RGCY	8 cut(s)	9, 116, 182, 297, 334, 381, 474, 491
DpnI	GATC	4 cut(s)	111, 125, 145, 558
DpnII	GATC	4 cut(s)	109, 123, 143, 556
DraI	TTTAAA	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	135, 223, 482
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	2 cut(s)	91, 192
FaiI	YATR	7 cut(s)	36, 83, 89, 190, 239, 241, 502
FatI	CATG	2 cut(s)	87, 188
FauNDI	CATATG	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	2 cut(s)	152, 492
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	91, 192
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	160, 231
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	3 cut(s)	26, 176, 437
Hpy166II	GTNNAC	3 cut(s)	349, 442, 514
Hpy188I	TCNGA	5 cut(s)	109, 165, 307, 377, 520
Hpy188III	TCNNGA	2 cut(s)	266, 323
Hpy8I	GTNNAC	3 cut(s)	349, 442, 514
Hpy99I	CGWCG	2 cut(s)	75, 78
HpyAV	CCTTC	2 cut(s)	455, 489
HpyCH4III	ACNGT	3 cut(s)	293, 311, 365
HpyCH4IV	ACGT	2 cut(s)	356, 463
HpyCH4V	TGCA	4 cut(s)	97, 218, 237, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	356, 463
Hsp92II	CATG	2 cut(s)	91, 192
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	109, 123, 143, 556
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	152, 492
MaeII	ACGT	2 cut(s)	356, 463
MaeIII	GTNAC	2 cut(s)	57, 464
MalI	GATC	4 cut(s)	111, 125, 145, 558
MboI	GATC	4 cut(s)	109, 123, 143, 556
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	4 cut(s)	17, 260, 408, 523
MlyI	GAGTC	2 cut(s)	169, 225
MnlI	CCTC	4 cut(s)	167, 214, 319, 371
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	2 cut(s)	276, 543
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	226
Mva1269I	GAATGC	2 cut(s)	220, 251
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	4 cut(s)	109, 123, 143, 556
NlaIII	CATG	2 cut(s)	91, 192
NlaIV	GGNNCC	2 cut(s)	136, 145
NmuCI	GTSAC	1 cut(s)	57
PctI	GAATGC	2 cut(s)	220, 251
PdmI	GAANNNNTTC	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	32
PleI	GAGTC	2 cut(s)	168, 225
PpsI	GAGTC	2 cut(s)	168, 225
PpuMI	RGGWCCY	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	136, 145
PspPI	GGNCC	3 cut(s)	135, 223, 482
PspPPI	RGGWCCY	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	276, 543
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	4 cut(s)	109, 123, 143, 556
Sau96I	GGNCC	3 cut(s)	135, 223, 482
SchI	GAGTC	2 cut(s)	169, 225
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	9 cut(s)	123, 184, 225, 274, 336, 359, 447, 466, 484
SfaNI	GCATC	1 cut(s)	496
SinI	GGWCC	3 cut(s)	135, 223, 482
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	17, 260, 408, 523
SsiI	CCGC	3 cut(s)	43, 92, 352
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	2 cut(s)	152, 492
SstI	GAGCTC	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	293, 311, 365
TaiI	ACGT	2 cut(s)	359, 466
TasI	AATT	4 cut(s)	17, 260, 408, 523
Tru1I	TTAA	2 cut(s)	276, 543
Tru9I	TTAA	2 cut(s)	276, 543
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	57
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	3 cut(s)	135, 223, 482
XapI	RAATTY	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	152, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.