Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006065.1

Orthogroup ID

OG0017752

Physical Location & Seq

Genomic Coordinates Forward (+)

67997 .. 72490

Gene Structure 4494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006065.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgttgggcttcggtgaattggtttctcactgccatagtcggcggagtgagttggtgtcacaagttcagcgtcgtcgtgctatggtcatggcggtgcaacggggttctgatcgggctaacccgatctgggttgggtcctttggatcctatctaggggagggtctgattggtagaggcagagcttacccatgccgtgtcggggatggcgtgttgaatgcagaggtccggcaactctggggaacccaaaggcttcctaggcccaagataaaccccttcggcgcatgtgaaatgctccaactgtgcattgcagcacagtgcctggccactttgacagcttcgggcatatgtgaatgcccagaaaacgaatttccagaaccttttaaaaggcgcttgcaccgtggccttacatctgacagtttggtttgtcaagaggaaaagcttcagggttctgttgaccgcacgttagacagtagagttttcagaggctggattgatacagataacccttggataattgatgatgagaatggtgagatgacatatgtgaaccttctactaaaccctgaacgttacactggctacacaggtccatcggctagaaggatatgggatgctgtttactctgaaaattgcccaaaatgtgtgtttaatattctgttagatcactatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

224

Amino Acids

25.31

Weight (kDa)

6.88

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017752)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G145200_v2.0.a1 Prupe.4G145200_v2.0.a1
rosa_multiflora	Rmu_sc0000689.1_g000027 Rmu_sc0000882.1_g000037 Rmu_sc0002522.1_g000031 Rmu_sc0006065.1_g000014 Rmu_sc0014478.1_g000016
rosa_rugosa	Rorug02G0232200 Rorug06G0256800
rosa_samantha	Rh2CG037300 Rh5AG086600 Rh5AG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	43, 92, 457
AclI	AACGTT	1 cut(s)	568
AclWI	GGATC	2 cut(s)	138, 151
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	127, 153, 199
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	182, 335, 439
AluI	AGCT	3 cut(s)	182, 335, 439
AlwI	GGATC	2 cut(s)	138, 151
AlwNI	CAGNNNCTG	2 cut(s)	319, 486
AoxI	GGCC	3 cut(s)	257, 321, 400
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	281, 390
AspS9I	GGNCC	4 cut(s)	135, 223, 258, 587
AsuHPI	GGTGA	2 cut(s)	26, 542
AvaII	GGWCC	3 cut(s)	135, 223, 587
AvrII	CCTAGG	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	2 cut(s)	197, 598
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	320
BfaI	CTAG	3 cut(s)	152, 255, 597
BfoI	RGCGCY	1 cut(s)	391
BisI	GCNGC	1 cut(s)	309
BlnI	CCTAGG	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	320
Bme18I	GGWCC	3 cut(s)	135, 223, 587
BmgT120I	GGNCC	4 cut(s)	135, 223, 258, 587
BmiI	GGNNCC	3 cut(s)	136, 145, 241
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	601
BsaJI	CCNNGG	3 cut(s)	254, 397, 506
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 153, 199
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	254, 397, 506
BseGI	GGATG	2 cut(s)	208, 616
BseLI	CCNNNNNNNGG	3 cut(s)	127, 153, 199
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	3 cut(s)	259, 323, 402
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	127, 153, 199
BsmI	GAATGC	2 cut(s)	220, 356
BsnI	GGCC	3 cut(s)	259, 323, 402
Bsp143I	GATC	4 cut(s)	109, 123, 143, 661
BspACI	CCGC	3 cut(s)	43, 92, 457
BspANI	GGCC	3 cut(s)	259, 323, 402
BspLI	GGNNCC	3 cut(s)	136, 145, 241
BspPI	GGATC	2 cut(s)	138, 151
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	254, 397, 506
BssMI	GATC	4 cut(s)	109, 123, 143, 661
BssT1I	CCWWGG	2 cut(s)	254, 506
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	5 cut(s)	300, 315, 398, 416, 470
BstC8I	GCNNGC	1 cut(s)	392
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	208, 616
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	2 cut(s)	281, 390
BstKTI	GATC	4 cut(s)	112, 126, 146, 664
BstMBI	GATC	4 cut(s)	109, 123, 143, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	259, 323, 402
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	2 cut(s)	208, 616
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	3 cut(s)	28, 320, 573
Cac8I	GCNNGC	1 cut(s)	392
CaiI	CAGNNNCTG	2 cut(s)	319, 486
CfoI	GCGC	2 cut(s)	281, 390
Cfr13I	GGNCC	4 cut(s)	135, 223, 258, 587
CseI	GACGC	1 cut(s)	59
CviAII	CATG	3 cut(s)	88, 189, 282
DpnI	GATC	4 cut(s)	111, 125, 145, 663
DpnII	GATC	4 cut(s)	109, 123, 143, 661
DraI	TTTAAA	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	254, 506
Eco47I	GGWCC	3 cut(s)	135, 223, 587
Eco57I	CTGAAG	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	254, 506
ErhI	CCWWGG	2 cut(s)	254, 506
FaeI	CATG	3 cut(s)	91, 192, 285
FatI	CATG	3 cut(s)	87, 188, 281
FauNDI	CATATG	2 cut(s)	344, 541
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	215, 623
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	152, 255, 597
GlaI	GCGC	2 cut(s)	280, 389
GluI	GCNGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	3 cut(s)	259, 323, 402
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	281, 390
Hin1II	CATG	3 cut(s)	91, 192, 285
Hin6I	GCGC	2 cut(s)	279, 388
HinP1I	GCGC	2 cut(s)	279, 388
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	437
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	2 cut(s)	26, 542
Hpy166II	GTNNAC	3 cut(s)	454, 547, 619
Hpy188I	TCNGA	5 cut(s)	109, 165, 412, 482, 625
Hpy188III	TCNNGA	2 cut(s)	371, 428
Hpy8I	GTNNAC	3 cut(s)	454, 547, 619
Hpy99I	CGWCG	2 cut(s)	75, 78
HpyAV	CCTTC	3 cut(s)	283, 560, 594
HpyCH4III	ACNGT	5 cut(s)	300, 315, 398, 416, 470
HpyCH4IV	ACGT	2 cut(s)	461, 568
HpyCH4V	TGCA	5 cut(s)	97, 218, 303, 308, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpySE526I	ACGT	2 cut(s)	461, 568
Hsp92II	CATG	3 cut(s)	91, 192, 285
HspAI	GCGC	2 cut(s)	279, 388
Kzo9I	GATC	4 cut(s)	109, 123, 143, 661
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	3 cut(s)	152, 255, 597
MaeII	ACGT	2 cut(s)	461, 568
MaeIII	GTNAC	2 cut(s)	57, 569
MalI	GATC	4 cut(s)	111, 125, 145, 663
MboI	GATC	4 cut(s)	109, 123, 143, 661
MflI	RGATCY	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	4 cut(s)	17, 365, 513, 628
MluNI	TGGCCA	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	5 cut(s)	151, 167, 214, 424, 476
Mox20I	TGGCCA	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	2 cut(s)	381, 648
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	2 cut(s)	220, 356
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	256
NdeI	CATATG	2 cut(s)	344, 541
NdeII	GATC	4 cut(s)	109, 123, 143, 661
NlaIII	CATG	3 cut(s)	91, 192, 285
NlaIV	GGNNCC	3 cut(s)	136, 145, 241
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	2 cut(s)	220, 356
PdmI	GAANNNNTTC	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	310
PpuMI	RGGWCCY	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	3 cut(s)	136, 145, 241
PspPI	GGNCC	4 cut(s)	135, 223, 258, 587
PspPPI	RGGWCCY	1 cut(s)	135
PstNI	CAGNNNCTG	2 cut(s)	319, 486
PsuI	RGATCY	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	381, 648
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	4 cut(s)	109, 123, 143, 661
Sau96I	GGNCC	4 cut(s)	135, 223, 258, 587
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	9 cut(s)	184, 225, 337, 379, 441, 464, 552, 571, 589
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	3 cut(s)	135, 223, 587
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	17, 365, 513, 628
SsiI	CCGC	3 cut(s)	43, 92, 457
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	3 cut(s)	152, 255, 597
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	254, 506
TaaI	ACNGT	5 cut(s)	300, 315, 398, 416, 470
TaiI	ACGT	2 cut(s)	464, 571
TasI	AATT	4 cut(s)	17, 365, 513, 628
Tru1I	TTAA	2 cut(s)	381, 648
Tru9I	TTAA	2 cut(s)	381, 648
TscAI	CASTG	3 cut(s)	35, 320, 580
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	57
TspRI	CASTG	3 cut(s)	35, 320, 580
VpaK11BI	GGWCC	3 cut(s)	135, 223, 587
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	152, 255, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.