Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0017752

Physical Location & Seq

Genomic Coordinates Reverse (-)

44028 .. 46683

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgttcagcatgaatgacatgaattgtcatggtttgtccccactatgtctcatcccgatccctactaaagtgacgagatcacataaatatgctgcaaacctgcctgcaaggaaggacgtccctacgagaggacgtaacgccaccctacacggagtcgatggagctaggcagtgggctgaaaatcggccgcctagtcgggctaggcggagcctaggcgttctgggcggcgtctacgaaagcccaaaaaatgaattttcggaacctttcaagaggccctttcaccgtggccttccatccgacagtttggtttgtcaagatgacaagctgcaagggtgtgttgaccgcactctagacagtagggctttcagaggctggattgagacagataacccttggacaaatgatgacgagactgataatgatgagataacatatgtgaaccttctactaaatcctgaacgttacactggctatgctggtccatcagcaagaaggatatgggatgctgtttattctgaaaatttcccaaaatgtgagtcgaaacttttggtagatctacttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

188

Amino Acids

21.25

Weight (kDa)

6.9

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017752)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G145200_v2.0.a1 Prupe.4G145200_v2.0.a1
rosa_multiflora	Rmu_sc0000689.1_g000027 Rmu_sc0000882.1_g000037 Rmu_sc0002522.1_g000031 Rmu_sc0006065.1_g000014 Rmu_sc0014478.1_g000016
rosa_rugosa	Rorug02G0232200 Rorug06G0256800
rosa_samantha	Rh2CG037300 Rh5AG086600 Rh5AG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	4 cut(s)	188, 205, 225, 343
AclI	AACGTT	1 cut(s)	460
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	251, 520
AcyI	GRCGYC	2 cut(s)	117, 228
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	2 cut(s)	164, 325
AluI	AGCT	2 cut(s)	164, 325
Alw26I	GTCTC	3 cut(s)	53, 374, 404
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	372
AoxI	GGCC	3 cut(s)	185, 272, 286
ApeKI	GCWGC	2 cut(s)	92, 325
ApoI	RAATTY	2 cut(s)	251, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspA2I	CCTAGG	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	273, 479
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	479
AvrII	CCTAGG	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	79, 312
BccI	CCATC	3 cut(s)	152, 301, 490
BcoDI	GTCTC	3 cut(s)	53, 374, 404
BfaI	CTAG	5 cut(s)	165, 192, 201, 212, 350
BfuAI	ACCTGC	1 cut(s)	108
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	4 cut(s)	93, 188, 226, 326
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	4 cut(s)	94, 189, 227, 327
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	273, 479
BmiI	GGNNCC	2 cut(s)	209, 261
BmsI	GCATC	1 cut(s)	493
BsaHI	GRCGYC	2 cut(s)	117, 228
BsaJI	CCNNGG	3 cut(s)	211, 283, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	472
BseDI	CCNNGG	3 cut(s)	211, 283, 392
BseGI	GGATG	3 cut(s)	51, 293, 508
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	472
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	79, 312
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	187, 274, 288
BsiEI	CGRYCG	1 cut(s)	188
BslFI	GGGAC	2 cut(s)	22, 104
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	3 cut(s)	53, 374, 404
BsmFI	GGGAC	2 cut(s)	22, 104
BsnI	GGCC	3 cut(s)	187, 274, 288
Bsp143I	GATC	3 cut(s)	57, 77, 553
BspACI	CCGC	4 cut(s)	188, 205, 225, 343
BspANI	GGCC	3 cut(s)	187, 274, 288
BspLI	GGNNCC	2 cut(s)	209, 261
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	211, 283, 392
BssMI	GATC	3 cut(s)	57, 77, 553
BssNI	GRCGYC	2 cut(s)	117, 228
BssT1I	CCWWGG	2 cut(s)	211, 392
Bst4CI	ACNGT	3 cut(s)	284, 302, 356
BstACI	GRCGYC	2 cut(s)	117, 228
BstC8I	GCNNGC	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	283
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	51, 293, 508
BstKTI	GATC	3 cut(s)	60, 80, 556
BstMAI	GTCTC	3 cut(s)	53, 374, 404
BstMBI	GATC	3 cut(s)	57, 77, 553
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	79, 312
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	187, 274, 288
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	51, 293, 508
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 465
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	273, 479
CseI	GACGC	1 cut(s)	217
CviAII	CATG	3 cut(s)	10, 19, 29
DpnI	GATC	3 cut(s)	59, 79, 555
DpnII	GATC	3 cut(s)	57, 77, 553
EaeI	YGGCCR	1 cut(s)	185
EagI	CGGCCG	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	211, 392
Eco47I	GGWCC	1 cut(s)	479
Eco52I	CGGCCG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	211, 392
ErhI	CCWWGG	2 cut(s)	211, 392
FaeI	CATG	3 cut(s)	13, 22, 32
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	22, 104
FatI	CATG	3 cut(s)	9, 18, 28
FauNDI	CATATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	93, 188, 226, 326
FokI	GGATG	3 cut(s)	38, 280, 515
Fsp4HI	GCNGC	4 cut(s)	93, 188, 226, 326
FspBI	CTAG	5 cut(s)	165, 192, 201, 212, 350
GluI	GCNGC	4 cut(s)	93, 188, 226, 326
HaeIII	GGCC	3 cut(s)	187, 274, 288
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	2 cut(s)	117, 228
Hin1II	CATG	3 cut(s)	13, 22, 32
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	153, 536
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	232, 340, 439
Hpy188I	TCNGA	4 cut(s)	259, 298, 368, 517
Hpy188III	TCNNGA	5 cut(s)	55, 268, 314, 350, 455
Hpy8I	GTNNAC	3 cut(s)	232, 340, 439
HpyAV	CCTTC	4 cut(s)	106, 299, 452, 486
HpyCH4III	ACNGT	3 cut(s)	284, 302, 356
HpyCH4IV	ACGT	3 cut(s)	117, 133, 460
HpyCH4V	TGCA	3 cut(s)	95, 107, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpySE526I	ACGT	3 cut(s)	117, 133, 460
Hsp92I	GRCGYC	2 cut(s)	117, 228
Hsp92II	CATG	3 cut(s)	13, 22, 32
Kzo9I	GATC	3 cut(s)	57, 77, 553
LmnI	GCTCC	2 cut(s)	161, 207
LpnPI	CCDG	7 cut(s)	113, 117, 206, 358, 453, 462, 468
Lsp1109I	GCAGC	2 cut(s)	79, 312
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	5 cut(s)	165, 192, 201, 212, 350
MaeII	ACGT	3 cut(s)	117, 133, 460
MaeIII	GTNAC	3 cut(s)	70, 134, 461
MalI	GATC	3 cut(s)	59, 79, 555
MboI	GATC	3 cut(s)	57, 77, 553
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	3 cut(s)	22, 251, 520
MlyI	GAGTC	2 cut(s)	162, 545
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	3 cut(s)	122, 264, 362
MslI	CAYNNNNRTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	3 cut(s)	57, 77, 553
NlaIII	CATG	3 cut(s)	13, 22, 32
NlaIV	GGNNCC	2 cut(s)	209, 261
NmuCI	GTSAC	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	94, 189, 227, 327
PleI	GAGTC	2 cut(s)	161, 544
PpsI	GAGTC	2 cut(s)	161, 544
Psp1406I	AACGTT	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	209, 261
PspPI	GGNCC	2 cut(s)	273, 479
PstNI	CAGNNNCTG	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	553
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	4 cut(s)	93, 188, 226, 326
Sau3AI	GATC	3 cut(s)	57, 77, 553
Sau96I	GGNCC	2 cut(s)	273, 479
SchI	GAGTC	2 cut(s)	162, 545
SetI	ASST	8 cut(s)	102, 120, 136, 166, 265, 327, 444, 463
SfaNI	GCATC	1 cut(s)	493
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	22, 251, 520
SsiI	CCGC	4 cut(s)	188, 205, 225, 343
SspMI	CTAG	5 cut(s)	165, 192, 201, 212, 350
StyI	CCWWGG	2 cut(s)	211, 392
TaaI	ACNGT	3 cut(s)	284, 302, 356
TaiI	ACGT	3 cut(s)	120, 136, 463
TaqI	TCGA	2 cut(s)	156, 539
TasI	AATT	3 cut(s)	22, 251, 520
TauI	GCSGC	2 cut(s)	190, 228
TscAI	CASTG	2 cut(s)	176, 472
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	92, 325
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	26, 35, 264
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	176, 472
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	251, 520
XbaI	TCTAGA	1 cut(s)	349
XmaJI	CCTAGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	5 cut(s)	165, 192, 201, 212, 350
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.