Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017752

Physical Location & Seq

Genomic Coordinates Forward (+)

43230008 .. 43237254

Gene Structure 7247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG304000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGTTCAAATTCGGATTTGGTGCTGAAGCTAGAGTCGGCGCTTACAGTTTCGTTCGAAGGCTCAATGACGGACACGGCAGTGTTGATTGCGACGACTTCAATTGCATTGATAATAGGGGTTTTGGTGGTTCTGGGGTTGAGTTCTTCATTGCAGTGGTTTGATTCCTTGCCTCCAGCCAAGCTGTGGTGTGACTGTCTCTTCTGGACTGAAGATGGTATGTGCCTCCTGCGTGACTGCAGCGTCTACGAATGCCCGGAAAATGAATTTTCGGAACCTTTCAAGAGGCCCTTTCACCGTGGCCTTCCATCCGACAGTTTGGTTTGTCAAGATGACAAGCTGCAGGGGTGTGTTGACCGCACTCTAGACAGTAGGGCTTTCAGAGGCTGGATTGAGACAGATAACCCTTGGACAAATGATGACGAGACTGATAATGATGAGATAACATATGTGAACCTTCTACTGAACCCTGAACGTTACACTGGCTATGCTGGTCCATCAGCAAGAAGGATATGGGATGCTGTTTATTCTGAAAATTGCCCAAAATGTGAGTCGAAACTTTTGGTAGATCTACTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

193

Amino Acids

21.64

Weight (kDa)

4.25

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	61 - 182	8e-26	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017752)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G145200_v2.0.a1 Prupe.4G145200_v2.0.a1
rosa_multiflora	Rmu_sc0000689.1_g000027 Rmu_sc0000882.1_g000037 Rmu_sc0002522.1_g000031 Rmu_sc0006065.1_g000014 Rmu_sc0014478.1_g000016
rosa_rugosa	Rorug02G0232200 Rorug06G0256800
rosa_samantha	Rh2CG037300 Rh5AG086600 Rh5AG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	1 cut(s)	358
AclI	AACGTT	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	10, 266
AcuI	CTGAAG	2 cut(s)	47, 231
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	9, 102, 283
AleI	CACNNNNGTG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	31, 184, 340
AluI	AGCT	3 cut(s)	31, 184, 340
Alw26I	GTCTC	3 cut(s)	203, 389, 419
AlwNI	CAGNNNCTG	1 cut(s)	387
AoxI	GGCC	2 cut(s)	287, 301
ApeKI	GCWGC	2 cut(s)	240, 340
ApoI	RAATTY	2 cut(s)	10, 266
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	288, 494
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	252, 327
BccI	CCATC	3 cut(s)	209, 316, 505
BceAI	ACGGC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	3 cut(s)	203, 389, 419
BfaI	CTAG	2 cut(s)	32, 365
BfmI	CTRYAG	2 cut(s)	238, 341
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	2 cut(s)	241, 341
BlsI	GCNGC	2 cut(s)	242, 342
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	288, 494
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	298, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	298, 407
BseGI	GGATG	2 cut(s)	308, 523
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	252, 327
BshFI	GGCC	2 cut(s)	289, 303
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	3 cut(s)	203, 389, 419
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	289, 303
Bsp119I	TTCGAA	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	2 cut(s)	289, 303
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	2 cut(s)	242, 345
BspT104I	TTCGAA	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	298, 407
BssMI	GATC	1 cut(s)	568
BssT1I	CCWWGG	1 cut(s)	407
Bst4CI	ACNGT	5 cut(s)	49, 197, 299, 317, 371
Bst6I	CTCTTC	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	308, 523
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	3 cut(s)	203, 389, 419
BstMBI	GATC	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	238, 341
BstV1I	GCAGC	2 cut(s)	252, 327
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	289, 303
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	308, 523
BtsI	GCAGTG	2 cut(s)	87, 161
BtsIMutI	CAGTG	3 cut(s)	87, 161, 480
CaiI	CAGNNNCTG	1 cut(s)	387
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	288, 494
CseI	GACGC	1 cut(s)	232
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	47, 231
EcoO109I	RGGNCCY	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaiI	YATR	5 cut(s)	221, 448, 450, 489, 514
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FauNDI	CATATG	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	241, 341
FokI	GGATG	2 cut(s)	295, 530
Fsp4HI	GCNGC	2 cut(s)	241, 341
FspBI	CTAG	2 cut(s)	32, 365
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	241, 341
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	289, 303
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	35, 164, 551
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	3 cut(s)	247, 355, 454
Hpy188I	TCNGA	5 cut(s)	16, 274, 313, 383, 532
Hpy188III	TCNNGA	4 cut(s)	205, 283, 329, 365
Hpy8I	GTNNAC	3 cut(s)	247, 355, 454
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	4 cut(s)	53, 314, 467, 501
HpyCH4III	ACNGT	5 cut(s)	49, 197, 299, 317, 371
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	4 cut(s)	107, 154, 240, 343
HpySE526I	ACGT	1 cut(s)	475
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	568
Lsp1109I	GCAGC	2 cut(s)	252, 327
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	32, 365
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	3 cut(s)	191, 233, 476
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	3 cut(s)	138, 193, 224
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	4 cut(s)	10, 102, 266, 535
MlyI	GAGTC	2 cut(s)	44, 560
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	183, 236, 279, 377
MslI	CAYNNNNRTG	2 cut(s)	80, 154
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	1 cut(s)	568
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	191, 233
NspV	TTCGAA	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	80
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	242, 342
PleI	GAGTC	2 cut(s)	43, 559
PpsI	GAGTC	2 cut(s)	43, 559
Psp1406I	AACGTT	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	288, 494
PstI	CTGCAG	2 cut(s)	242, 345
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	568
RseI	CAYNNNNRTG	2 cut(s)	80, 154
SatI	GCNGC	2 cut(s)	241, 341
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	2 cut(s)	288, 494
SchI	GAGTC	2 cut(s)	44, 560
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	6 cut(s)	33, 186, 280, 342, 459, 478
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	238, 341
SfuI	TTCGAA	1 cut(s)	57
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	2 cut(s)	80, 154
Sse9I	AATT	4 cut(s)	10, 102, 266, 535
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	2 cut(s)	32, 365
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	5 cut(s)	49, 197, 299, 317, 371
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	57, 554
TasI	AATT	4 cut(s)	10, 102, 266, 535
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	3 cut(s)	87, 161, 487
TseFI	GTSAC	2 cut(s)	191, 233
TseI	GCWGC	2 cut(s)	240, 340
Tsp45I	GTSAC	2 cut(s)	191, 233
TspDTI	ATGAA	2 cut(s)	138, 279
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	87, 161, 487
Van91I	CCANNNNNTGG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	2 cut(s)	10, 266
XbaI	TCTAGA	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	2 cut(s)	32, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.