Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017752

Physical Location & Seq

Genomic Coordinates Reverse (-)

2962724 .. 2963489

Gene Structure 766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG037300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTGCCTCCTGCGTGACTGCAGCGTCTACGAATGCCCGGAAAATGAATTTTCGGAACCTTTCAAGAGGCCCTTTCACCGTGGCCTTCCATCCGACAGTTTGGTTTGTCAAGATGACAAGCTGCAGGGGTGTGTTGACCGCACTCTAGACAGTAGGGCTTTCAGAGGCTGGATTGAGACAGATAACCCTTGGACAAATGATGACGAGACTGATAATGATGAGATAACATATGTGAACCTTCTACTGAACCCTGAACGTTACACTGGCTATGCTGGTCCATCAGCAAGAAGGATATGGGATGCTGTTTATTCTGAAAATTGCCCAAAATGTGAGTCGAAACTTTTGGTAGATCTACTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

120

Amino Acids

13.84

Weight (kDa)

4.43

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERO1	PF04137	1 - 109	2.3e-21	Endoplasmic Reticulum Oxidoreductin 1 (ERO1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017752)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G145200_v2.0.a1 Prupe.4G145200_v2.0.a1
rosa_multiflora	Rmu_sc0000689.1_g000027 Rmu_sc0000882.1_g000037 Rmu_sc0002522.1_g000031 Rmu_sc0006065.1_g000014 Rmu_sc0014478.1_g000016
rosa_rugosa	Rorug02G0232200 Rorug06G0256800
rosa_samantha	Rh2CG037300 Rh5AG086600 Rh5AG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	1 cut(s)	139
AclI	AACGTT	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	170, 200
AlwNI	CAGNNNCTG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	68, 82
ApeKI	GCWGC	2 cut(s)	21, 121
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspS9I	GGNCC	2 cut(s)	69, 275
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	33, 108
BccI	CCATC	2 cut(s)	97, 286
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	170, 200
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	19, 122
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	22, 122
BlsI	GCNGC	2 cut(s)	23, 123
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	69, 275
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	79, 188
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	79, 188
BseGI	GGATG	2 cut(s)	89, 304
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	33, 108
BshFI	GGCC	2 cut(s)	70, 84
BsiSI	CCGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	170, 200
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	70, 84
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	70, 84
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	2 cut(s)	23, 126
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	79, 188
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	80, 98, 152
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	89, 304
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	170, 200
BstMBI	GATC	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	2 cut(s)	19, 122
BstV1I	GCAGC	2 cut(s)	33, 108
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	70, 84
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	89, 304
BtsIMutI	CAGTG	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	69, 275
CseI	GACGC	1 cut(s)	13
CviJI	RGCY	6 cut(s)	70, 84, 121, 158, 168, 267
CviKI_1	RGCY	6 cut(s)	70, 84, 121, 158, 168, 267
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaiI	YATR	4 cut(s)	229, 231, 270, 295
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FauNDI	CATATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	22, 122
FokI	GGATG	2 cut(s)	76, 311
Fsp4HI	GCNGC	2 cut(s)	22, 122
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	22, 122
HaeIII	GGCC	2 cut(s)	70, 84
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	28, 136, 235
Hpy188I	TCNGA	4 cut(s)	55, 94, 164, 313
Hpy188III	TCNNGA	3 cut(s)	64, 110, 146
Hpy8I	GTNNAC	3 cut(s)	28, 136, 235
HpyAV	CCTTC	3 cut(s)	95, 248, 282
HpyCH4III	ACNGT	3 cut(s)	80, 98, 152
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	2 cut(s)	21, 124
HpySE526I	ACGT	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	7 cut(s)	23, 51, 110, 154, 249, 258, 264
Lsp1109I	GCAGC	2 cut(s)	33, 108
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	14, 257
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	47, 316
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	17, 60, 158
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	23, 123
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	69, 275
PstI	CTGCAG	2 cut(s)	23, 126
PstNI	CAGNNNCTG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	349
SatI	GCNGC	2 cut(s)	22, 122
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	2 cut(s)	69, 275
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	4 cut(s)	61, 123, 240, 259
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	19, 122
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	47, 316
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	80, 98, 152
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	47, 316
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	21, 121
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.