Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017752

Physical Location & Seq

Genomic Coordinates Forward (+)

23196431 .. 23196928

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0232200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGTTCAATAGATGTAGCAGGATCCAACAAACTGCATGCAGTTTGTGTCCCTTACCCAGCACAAGGCCATGTCAAACCGAGGGGATTCCACATTACCTTTGTCAACACCGAGTTCAATCACCGGCGCTTAGTTCGGTCCAAAGGTTCCGACTTATCCGTTGAGGGCCTAGTGGATTTCCAGTTTGAGACCATACCGGATGGGCTGCCACCTTCGGATAAAGATGCGACACAAGATGTCCCAGCTTTATGTGACTCCACCAGGAAAACTTGTCTAGGTCCTTTTAAGGAGCTGGTGATGAAAATCAATTCATCATGTGAAGTGCCAAAAGTTAGTTGTGTAATCACAGATGGTGTGATGGGATTTGGGAGGGAAGCTGCTAAGGAATTAGGGATTCCTGAGGTTCAATTTTGGACTGCCTCTGCTTGTGGCTTCATGTCTTACCTGCACTATAGTGAACTAGCCAAACGAGGAATTGTTCCTTTTCAAGGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0015035 GO:0015036 GO:0016020 GO:0016491 GO:0016667 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0031984 GO:0034975 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04141 ko05110 map04141 map05110

Pfam Domains

Protein Families

ERO1

Protein Analysis

165

Amino Acids

17.96

Weight (kDa)

6.5

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017752)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G145200_v2.0.a1 Prupe.4G145200_v2.0.a1
rosa_multiflora	Rmu_sc0000689.1_g000027 Rmu_sc0000882.1_g000037 Rmu_sc0002522.1_g000031 Rmu_sc0006065.1_g000014 Rmu_sc0014478.1_g000016
rosa_rugosa	Rorug02G0232200 Rorug06G0256800
rosa_samantha	Rh2CG037300 Rh5AG086600 Rh5AG304000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	18, 31
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	65, 488
AgsI	TTSAA	4 cut(s)	9, 118, 407, 488
AjnI	CCWGG	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	245, 292, 377
AluI	AGCT	3 cut(s)	245, 292, 377
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	2 cut(s)	18, 31
AoxI	GGCC	2 cut(s)	67, 166
ApeKI	GCWGC	2 cut(s)	205, 377
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	3 cut(s)	138, 166, 278
AsuHPI	GGTGA	2 cut(s)	113, 307
AvaII	GGWCC	2 cut(s)	138, 278
AxyI	CCTNAGG	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	192, 364
BccI	CCATC	3 cut(s)	194, 344, 352
BciT130I	CCWGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	3 cut(s)	170, 275, 461
BfmI	CTRYAG	1 cut(s)	451
BfoI	RGCGCY	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	2 cut(s)	206, 378
BlsI	GCNGC	2 cut(s)	207, 379
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	2 cut(s)	138, 278
BmgT120I	GGNCC	3 cut(s)	138, 166, 278
BmiI	GGNNCC	2 cut(s)	25, 148
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 488
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	181
Bse21I	CCTNAGG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	65, 488
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	192, 364
BseYI	CCCAGC	2 cut(s)	58, 241
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	69, 168
BsiSI	CCGG	2 cut(s)	124, 197
BslFI	GGGAC	2 cut(s)	35, 224
BslI	CCNNNNNNNGG	2 cut(s)	65, 488
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	35, 224
BsnI	GGCC	2 cut(s)	69, 168
Bso31I	GGTCTC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	69, 168
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	25, 148
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	2 cut(s)	18, 31
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	130, 381, 399
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	192, 364
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	69, 168
BtsCI	GGATG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	138, 166, 278
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	4 cut(s)	38, 71, 315, 436
CviJI	RGCY	8 cut(s)	69, 168, 205, 245, 292, 377, 432, 464
CviKI_1	RGCY	8 cut(s)	69, 168, 205, 245, 292, 377, 432, 464
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	3 cut(s)	130, 381, 399
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	138, 278
Eco81I	CCTNAGG	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	486
EcoO109I	RGGNCCY	2 cut(s)	166, 278
EcoRII	CCWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	41, 74, 318, 439
FaiI	YATR	7 cut(s)	39, 72, 194, 250, 316, 437, 453
FaqI	GGGAC	2 cut(s)	35, 224
FatI	CATG	4 cut(s)	37, 70, 314, 435
Fnu4HI	GCNGC	2 cut(s)	206, 378
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	206, 378
FspBI	CTAG	3 cut(s)	170, 275, 461
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	206, 378
GsaI	CCCAGC	2 cut(s)	62, 245
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	69, 168
HapII	CCGG	2 cut(s)	124, 197
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	41, 74, 318, 439
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	87, 254, 394
HpaII	CCGG	2 cut(s)	124, 197
HphI	GGTGA	2 cut(s)	113, 307
Hpy166II	GTNNAC	2 cut(s)	106, 458
Hpy188I	TCNGA	2 cut(s)	151, 217
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	106, 458
HpyAV	CCTTC	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	37, 41, 448
HpyF3I	CTNAG	3 cut(s)	130, 381, 399
Hsp92II	CATG	4 cut(s)	41, 74, 318, 439
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	2 cut(s)	192, 364
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	3 cut(s)	170, 275, 461
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	4 cut(s)	307, 386, 407, 474
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	51, 174
MnlI	CCTC	6 cut(s)	75, 157, 363, 394, 430, 464
MseI	TTAA	2 cut(s)	285, 496
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	124, 197
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	4 cut(s)	41, 74, 318, 439
NlaIV	GGNNCC	2 cut(s)	25, 148
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	87, 394
PkrI	GCNGC	2 cut(s)	207, 379
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	2 cut(s)	58, 241
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	25, 148
PspPI	GGNCC	3 cut(s)	138, 166, 278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	285, 496
SatI	GCNGC	2 cut(s)	206, 378
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	3 cut(s)	138, 166, 278
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	451
SgrAI	CRCCGGYG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	138, 278
SmiMI	CAYNNNNRTG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	4 cut(s)	307, 386, 407, 474
SspMI	CTAG	3 cut(s)	170, 275, 461
StyD4I	CCNGG	1 cut(s)	260
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	4 cut(s)	307, 386, 407, 474
TfiI	GAWTC	2 cut(s)	87, 394
Tru1I	TTAA	2 cut(s)	285, 496
Tru9I	TTAA	2 cut(s)	285, 496
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	205, 377
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	300, 314, 424
TspGWI	ACGGA	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	138, 278
XagI	CCTNNNNNAGG	1 cut(s)	486
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	3 cut(s)	170, 275, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.