Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000961.1

Orthogroup ID

OG0008792

Physical Location & Seq

Genomic Coordinates Forward (+)

43115 .. 44152

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgatatttgctccggattctgggtgttattgtaggataatggaagcttatttcaaaaaaggtgactatagaaaagttgttgaattgtttcaggaactgaaaagtaggcaattagaattgacaccattgtcaactcagattctatgcgagtcgctaaccaaattggttaagcctctagaagctcttgagatttttcgaagtatgtcaaagggcatttctttggactcttcgaagatatattctgttttgatcagttcatttgcgagcattcgagaagtgaaggtagctgaagagctgtttgaagaagcagaaaccaagaaaatgttgaggaatccgactgtatttttgagactgatcacaatgtatgttgaagaagggttggtggataagactcttgaaatagtcaagacaatgaagggtgcaaatatcagagtttccgataacatatgctgcgcagttgtgagtgggttctccaggaaaagcaggtttctcacagcagttaaagtgtttgaagatttaatctcaatgggatgtgaaccgggacaggtgacatacgctttgattatcaatgtgtattgtcgtcttgggcttcattctaaggctgagatggtgtttagagatatggaagaaaaagggtttgataaatgtgttgtggcgtattcaagcatggttgtaatgtatgggaagacaggaaggtcaagagaggcaatgaggcttgtggccaagatgaaagaaagagggtgtaagccgaatgtgtggatttacaattctttgatggatatgcatggaagggataataatacgaggcaagttgcaaagctatggagcgaaatgaagagaaggaaggtagcacctgataaggtgagctacacaactgttataggtgcttataacaaggcaggggactttgatatgtgcttgagattttacaatgagtataggactcatggcggtgttttggacaaggctatggctggaatgatggttggtgttttctccaagagtgatcgtgttgacgagttggtgaagcttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

345

Amino Acids

39.31

Weight (kDa)

9.12

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	152 - 194	3.6e-06	PPR repeat family
PPR_long	PF17177	158 - 314	9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	176 - 209	2.5e-07	PPR repeat
PPR_2	PF13041	180 - 213	6.9e-06	PPR repeat family
PPR	PF01535	183 - 213	3.3e-07	PPR repeat
PPR_3	PF13812	204 - 263	7.8e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	216 - 252	3e-08	PPR repeat family
PPR	PF01535	218 - 248	5.6e-06	PPR repeat
PPR_2	PF13041	250 - 296	5.8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13770
fragaria_vesca	FvH4_4g36140
malus_domestica	MD13G1010900.v1.1 MD16G1008400.v1.1
prunus_persica	Prupe.1G342100_v2.0.a1
pyrus_communis	pycom16g00820
rosa_chinensis	RchiOBHm_Chr4g0445881
rosa_laevigata	RLG00000005705
rosa_multiflora	Rmu_co8340621.1_g000001 Rmu_sc0000961.1_g000004 Rmu_sc0000961.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386320
rosa_rugosa	Rorug04G0365400
rosa_samantha	Rh4AG427200 Rh4BG437000 Rh4BG437400 Rh4BG437500 Rh4CG453700 Rh4CG453800 Rh4CG454200 Rh4DG435500
rosa_wichuraiana	Rw4G036550 Rw4G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	891
AasI	GACNNNNNNGTC	2 cut(s)	127, 694
Acc16I	TGCGCA	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	1 cut(s)	951
AcoI	YGGCCR	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	7 cut(s)	55, 83, 302, 371, 398, 512, 663
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	7 cut(s)	47, 182, 287, 295, 820, 867, 1030
AluI	AGCT	7 cut(s)	47, 182, 287, 295, 820, 867, 1030
Alw26I	GTCTC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	97
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	1 cut(s)	450
ArsI	GACNNNNNNTTYG	4 cut(s)	328, 360, 541, 573
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	4 cut(s)	74, 559, 874, 1036
AsuII	TTCGAA	2 cut(s)	196, 230
BalI	TGGCCA	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	3 cut(s)	601, 769, 976
BciT130I	CCWGG	1 cut(s)	475
BclI	TGATCA	2 cut(s)	249, 354
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	475, 540
BmrFI	CCNGG	2 cut(s)	475, 540
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	457
Bpu14I	TTCGAA	2 cut(s)	196, 230
BpuEI	CTTGAG	2 cut(s)	206, 940
BpuMI	CCSGG	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	714
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	149, 594
BseXI	GCAGC	1 cut(s)	437
BshFI	GGCC	1 cut(s)	722
BsiSI	CCGG	2 cut(s)	14, 539
BslFI	GGGAC	2 cut(s)	555, 917
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	2 cut(s)	555, 917
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	722
Bsp119I	TTCGAA	2 cut(s)	196, 230
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	249, 354, 1006
BspACI	CCGC	1 cut(s)	951
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	2 cut(s)	148, 595
BspEI	TCCGGA	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	474
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	2 cut(s)	196, 230
BsrDI	GCAATG	1 cut(s)	714
BssMI	GATC	3 cut(s)	249, 354, 1006
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	340, 877
Bst6I	CTCTTC	3 cut(s)	232, 285, 830
BstBI	TTCGAA	2 cut(s)	196, 230
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	135, 597, 603
BstF5I	GGATG	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	252, 357, 1009
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	249, 354, 1006
BstNI	CCWGG	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	473, 538
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	692
BsuRI	GGCC	1 cut(s)	722
BtsCI	GGATG	1 cut(s)	536
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	455
CviAII	CATG	3 cut(s)	667, 785, 947
DdeI	CTNAG	3 cut(s)	135, 597, 603
DpnI	GATC	3 cut(s)	251, 356, 1008
DpnII	GATC	3 cut(s)	249, 354, 1006
DrdI	GACNNNNNNGTC	2 cut(s)	127, 694
DseDI	GACNNNNNNGTC	2 cut(s)	127, 694
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	3 cut(s)	232, 285, 830
EarI	CTCTTC	3 cut(s)	232, 285, 830
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	786
FaeI	CATG	3 cut(s)	670, 788, 950
FaqI	GGGAC	2 cut(s)	555, 917
FatI	CATG	3 cut(s)	666, 784, 946
FauNDI	CATATG	1 cut(s)	446
FbaI	TGATCA	2 cut(s)	249, 354
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	176
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	2 cut(s)	14, 539
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	670, 788, 950
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	2 cut(s)	132, 1015
HindII	GTYRAC	2 cut(s)	132, 1015
HindIII	AAGCTT	2 cut(s)	45, 1028
HinfI	GANTC	7 cut(s)	17, 139, 149, 224, 331, 391, 943
HpaII	CCGG	2 cut(s)	14, 539
HphI	GGTGA	4 cut(s)	74, 559, 874, 1036
Hpy166II	GTNNAC	3 cut(s)	132, 536, 1015
Hpy188I	TCNGA	4 cut(s)	138, 336, 431, 439
Hpy188III	TCNNGA	8 cut(s)	14, 92, 176, 185, 272, 395, 406, 699
Hpy8I	GTNNAC	3 cut(s)	132, 536, 1015
HpyAV	CCTTC	7 cut(s)	274, 368, 409, 687, 783, 834, 838
HpyCH4III	ACNGT	2 cut(s)	340, 877
HpyCH4V	TGCA	3 cut(s)	422, 784, 815
HpyF3I	CTNAG	3 cut(s)	135, 597, 603
Hsp92II	CATG	3 cut(s)	670, 788, 950
HspAI	GCGC	1 cut(s)	453
Kpn2I	TCCGGA	1 cut(s)	13
Ksp22I	TGATCA	2 cut(s)	249, 354
Kzo9I	GATC	3 cut(s)	249, 354, 1006
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	16, 825
Lsp1109I	GCAGC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	62, 547
MalI	GATC	3 cut(s)	251, 356, 1008
MboI	GATC	3 cut(s)	249, 354, 1006
MboII	GAAGA	9 cut(s)	219, 244, 302, 314, 383, 524, 638, 697, 847
MlsI	TGGCCA	1 cut(s)	722
MluCI	AATT	5 cut(s)	83, 110, 116, 161, 766
MluNI	TGGCCA	1 cut(s)	722
MlyI	GAGTC	4 cut(s)	158, 218, 385, 937
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	183, 321, 697, 705, 731, 798
Mox20I	TGGCCA	1 cut(s)	722
Mph1103I	ATGCAT	1 cut(s)	786
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	722
MseI	TTAA	3 cut(s)	168, 501, 518
MslI	CAYNNNNRTG	1 cut(s)	951
Msp20I	TGGCCA	1 cut(s)	722
MspI	CCGG	2 cut(s)	14, 539
MspR9I	CCNGG	2 cut(s)	475, 540
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	475
NciI	CCSGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	3 cut(s)	249, 354, 1006
NlaIII	CATG	3 cut(s)	670, 788, 950
NmuCI	GTSAC	2 cut(s)	62, 547
NsbI	TGCGCA	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	786
NspV	TTCGAA	2 cut(s)	196, 230
PciSI	GCTCTTC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	17, 139, 331
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	4 cut(s)	157, 218, 385, 937
PpsI	GAGTC	4 cut(s)	157, 218, 385, 937
PsiI	TTATAA	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PstNI	CAGNNNCTG	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	951
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	168, 501, 518
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	3 cut(s)	249, 354, 1006
SchI	GAGTC	4 cut(s)	158, 218, 385, 937
ScrFI	CCNGG	2 cut(s)	475, 540
SfcI	CTRYAG	1 cut(s)	67
SfuI	TTCGAA	2 cut(s)	196, 230
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	2 cut(s)	185, 919
SmoI	CTYRAG	2 cut(s)	185, 919
Sse9I	AATT	5 cut(s)	83, 110, 116, 161, 766
SsiI	CCGC	1 cut(s)	951
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	473, 538
TaaI	ACNGT	2 cut(s)	340, 877
TaqI	TCGA	3 cut(s)	196, 230, 271
TasI	AATT	5 cut(s)	83, 110, 116, 161, 766
TfiI	GAWTC	3 cut(s)	17, 139, 331
Tru1I	TTAA	3 cut(s)	168, 501, 518
Tru9I	TTAA	3 cut(s)	168, 501, 518
TseFI	GTSAC	2 cut(s)	62, 547
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	2 cut(s)	62, 547
TspDTI	ATGAA	5 cut(s)	246, 428, 581, 743, 848
XbaI	TCTAGA	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.