Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0010981

Physical Location & Seq

Genomic Coordinates Forward (+)

118907 .. 122699

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggtgttccgaggcgattctctaaaatgggttgtagtcgccttgacgattctgcacccggttgacccggtctctgccaactgccatttcagttttgttgacgattacaagctctacgacttcagtttggatactcccatacccttgtatcctcacggagttcaaagcgaagatgggttctacaaggtcgtaggaaataagactgtgatctggtttcagctttgcgatggaatgattttcaatcacgacccacctagatgtgttgattgctcggattgtggtggcccatcacactgtggcatgggttgtagtgctcttgtagcaaaaaacacaggaggttacgatgtttgcactaacattgggcgtgcctcgagcatggacattaacataattgataagaacaatcctcacattggtgtcattgttaagatgtcaagtaatggcctaaatgaaaattgttcactctctgtgtctgtaatttgtgatccttatggatttcagggaccatattcgttggagaaaacagggacatgtaactatggtacagtgctgaagcatccttctggctgtgccaagattgtacatgttagtggcaaaggatggggctggtttgccacctttctaataatagtcttgtgcatttttggagtgtatctgttggctggtgcagtttatcgatattacagtcttggagttagtggaatagatattataccaaatctggacttttggactggcttacctcagcaagcacaaagtgtgtctgcttctttattgcacaaatttaggggatcttctcaaggttatcgaagctcctattctcctgtcaacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

ATG27

Protein Analysis

278

Amino Acids

30.27

Weight (kDa)

6.47

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40316 AT2G40316 AT2G40316
fragaria_vesca	FvH4_7g25140 FvH4_7g25140
malus_domestica	MD01G1158200.v1.1 MD07G1226900.v1.1
prunus_persica	Prupe.2G256500_v2.0.a1
pyrus_communis	pycom01g17490 pycom07g20550
rosa_chinensis	RchiOBHm_Chr1g0371041
rosa_laevigata	RLG00000026990
rosa_multiflora	Rmu_sc0001018.1_g000028
rosa_roxburghii	Rroxscaffold_4G00286040
rosa_rugosa	Rorug01G0361000 Rorug01G0361100
rosa_samantha	Rh1AG371300 Rh1CG348100 Rh1DG366000
rosa_wichuraiana	Rw1G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	479, 799
AcsI	RAATTY	1 cut(s)	782
AcuI	CTGAAG	2 cut(s)	106, 572
AdeI	CACNNNGTG	2 cut(s)	296, 758
AfaI	GTAC	2 cut(s)	544, 582
AfiI	CCNNNNNNNGG	1 cut(s)	413
AflIII	ACRYGT	2 cut(s)	530, 583
AgsI	TTSAA	2 cut(s)	164, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	3 cut(s)	112, 220, 813
AluI	AGCT	3 cut(s)	112, 220, 813
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	479, 799
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	2 cut(s)	283, 442
ApoI	RAATTY	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	284, 503
AsuC2I	CCSGG	2 cut(s)	59, 68
AvaI	CYCGRG	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	503
BaeI	ACNNNNGTAYC	2 cut(s)	131, 164
Bbv12I	GWGCWC	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	744
BccI	CCATC	4 cut(s)	167, 221, 295, 594
BciVI	GTATCC	2 cut(s)	124, 159
BcnI	CCSGG	2 cut(s)	59, 68
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	2 cut(s)	124, 159
Bme1390I	CCNGG	2 cut(s)	59, 68
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	284, 503
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	2 cut(s)	59, 68
BmsI	GCATC	1 cut(s)	565
Bpu10I	CCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	783
BpuMI	CCSGG	2 cut(s)	59, 68
Bsa29I	ATCGAT	1 cut(s)	676
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	739
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	556, 605
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	1 cut(s)	739
BsgI	GTGCAG	2 cut(s)	38, 687
BshFI	GGCC	2 cut(s)	285, 444
BshVI	ATCGAT	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	2 cut(s)	59, 68
BslFI	GGGAC	2 cut(s)	516, 541
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	516, 541
BsnI	GGCC	2 cut(s)	285, 444
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	207, 484, 791
BspANI	GGCC	2 cut(s)	285, 444
BspCNI	CTCAG	1 cut(s)	757
BspDI	ATCGAT	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	479, 799
BspTNI	GGTCTC	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	739
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	207, 484, 791
Bst4CI	ACNGT	4 cut(s)	205, 296, 547, 686
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	366, 750
BstDEI	CTNAG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	556, 605
BstKTI	GATC	3 cut(s)	210, 487, 794
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	3 cut(s)	207, 484, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNSI	RCATGY	2 cut(s)	534, 587
BstSCI	CCNGG	2 cut(s)	57, 66
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
Bsu15I	ATCGAT	1 cut(s)	676
BsuI	GTATCC	2 cut(s)	124, 159
BsuRI	GGCC	2 cut(s)	285, 444
BsuTUI	ATCGAT	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	556, 605
BtsIMutI	CAGTG	2 cut(s)	292, 552
Cac8I	GCNNGC	2 cut(s)	366, 750
Cfr13I	GGNCC	2 cut(s)	284, 503
ClaI	ATCGAT	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	543, 581
CviAII	CATG	4 cut(s)	301, 376, 531, 584
CviJI	RGCY	9 cut(s)	112, 220, 285, 444, 567, 606, 662, 738, 813
CviKI_1	RGCY	9 cut(s)	112, 220, 285, 444, 567, 606, 662, 738, 813
CviQI	GTAC	2 cut(s)	543, 581
DdeI	CTNAG	1 cut(s)	744
DpnI	GATC	3 cut(s)	209, 486, 793
DpnII	GATC	3 cut(s)	207, 484, 791
DraIII	CACNNNGTG	2 cut(s)	296, 758
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	106, 572
Eco88I	CYCGRG	1 cut(s)	370
FaeI	CATG	4 cut(s)	304, 379, 534, 587
FaqI	GGGAC	2 cut(s)	516, 541
FatI	CATG	4 cut(s)	300, 375, 530, 583
FokI	GGATG	2 cut(s)	543, 612
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	2 cut(s)	285, 444
HapII	CCGG	2 cut(s)	59, 68
Hin1II	CATG	4 cut(s)	304, 379, 534, 587
HincII	GTYRAC	3 cut(s)	64, 100, 829
HindII	GTYRAC	3 cut(s)	64, 100, 829
HinfI	GANTC	2 cut(s)	17, 49
HpaII	CCGG	2 cut(s)	59, 68
Hpy166II	GTNNAC	4 cut(s)	64, 100, 461, 829
Hpy188I	TCNGA	3 cut(s)	11, 274, 836
Hpy188III	TCNNGA	2 cut(s)	245, 722
Hpy8I	GTNNAC	4 cut(s)	64, 100, 461, 829
HpyAV	CCTTC	1 cut(s)	570
HpyCH4III	ACNGT	4 cut(s)	205, 296, 547, 686
HpyCH4V	TGCA	5 cut(s)	55, 351, 639, 668, 778
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	744
Hsp92II	CATG	4 cut(s)	304, 379, 534, 587
Kzo9I	GATC	3 cut(s)	207, 484, 791
LmnI	GCTCC	1 cut(s)	818
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	338, 533
MalI	GATC	3 cut(s)	209, 486, 793
MboI	GATC	3 cut(s)	207, 484, 791
MboII	GAAGA	2 cut(s)	182, 786
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	4 cut(s)	390, 454, 477, 782
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	5, 162, 329, 379, 417, 753
MseI	TTAA	2 cut(s)	384, 426
MslI	CAYNNNNRTG	3 cut(s)	256, 414, 588
MspI	CCGG	2 cut(s)	59, 68
MspR9I	CCNGG	2 cut(s)	59, 68
MwoI	GCNNNNNNNGC	1 cut(s)	320
NciI	CCSGG	2 cut(s)	59, 68
NdeII	GATC	3 cut(s)	207, 484, 791
NlaIII	CATG	4 cut(s)	304, 379, 534, 587
NlaIV	GGNNCC	1 cut(s)	504
NspI	RCATGY	2 cut(s)	534, 587
OliI	CACNNNNGTG	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	370
PciI	ACATGT	2 cut(s)	530, 583
PfeI	GAWTC	2 cut(s)	17, 49
PflFI	GACNNNGTC	1 cut(s)	68
PscI	ACATGT	2 cut(s)	530, 583
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	284, 503
PspXI	VCTCGAGB	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	791
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	2 cut(s)	544, 582
RsaNI	GTAC	2 cut(s)	543, 581
RseI	CAYNNNNRTG	3 cut(s)	256, 414, 588
SaqAI	TTAA	2 cut(s)	384, 426
Sau3AI	GATC	3 cut(s)	207, 484, 791
Sau96I	GGNCC	2 cut(s)	284, 503
ScrFI	CCNGG	2 cut(s)	59, 68
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	9 cut(s)	114, 189, 222, 256, 340, 620, 745, 805, 815
SfaNI	GCATC	1 cut(s)	565
Sfr274I	CTCGAG	1 cut(s)	370
SinI	GGWCC	1 cut(s)	503
SlaI	CTCGAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	3 cut(s)	256, 414, 588
SmlI	CTYRAG	2 cut(s)	370, 798
SmoI	CTYRAG	2 cut(s)	370, 798
Sse9I	AATT	4 cut(s)	390, 454, 477, 782
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	57, 66
TaaI	ACNGT	4 cut(s)	205, 296, 547, 686
TaqI	TCGA	3 cut(s)	371, 676, 808
TasI	AATT	4 cut(s)	390, 454, 477, 782
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	17, 49
Tru1I	TTAA	2 cut(s)	384, 426
Tru9I	TTAA	2 cut(s)	384, 426
TscAI	CASTG	2 cut(s)	299, 552
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	299, 552
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	2 cut(s)	534, 587
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.