Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Reverse (-)

5129 .. 5650

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgaagaaggcaatcatgatcttgctcaacggcgacacaattccccagctcttcatcacaattatccgctacgtcctccccttcgaggaccacaccgtccagaaacttctcctcctctacctcgagatcattaacaagacagattcccgaggcaaagttctcccagaggtgatcctcaactgccagaacctccgcaacaatctccagagccctaacgagtacatccacggcgtcacactccgattcctctgccgattgaacaaggccgagatcgtcgagccgttgattcagtcgattctggcgaatctggaccgccgctcgttcgttcgacggaacgctgtcagcgtagtcatgtctgtgtataggcttccgcagggtaagcagttactggtggatgcgtcggagattatcgatcggtcctccatttgccgctgcttctggaaatatgacgccgtgccggagagggagagagaaagagagggagagggagcgtctgagaggagtctcagagagaatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

173

Amino Acids

20.08

Weight (kDa)

8.96

Isoelectric Point (pI)

62.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	6 cut(s)	67, 193, 313, 316, 371, 430
AclWI	GGATC	1 cut(s)	166
AcyI	GRCGYC	2 cut(s)	231, 450
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	388
Ama87I	CYCGRG	2 cut(s)	122, 147
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	88, 310, 417
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	2 cut(s)	122, 147
AvaII	GGWCC	3 cut(s)	88, 310, 417
BanII	GRGCYC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	419
BceAI	ACGGC	4 cut(s)	46, 244, 265, 437
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BcoDI	GTCTC	1 cut(s)	509
BisI	GCNGC	3 cut(s)	316, 430, 433
BlsI	GCNGC	3 cut(s)	317, 431, 434
Bme18I	GGWCC	3 cut(s)	88, 310, 417
BmeT110I	CYCGRG	2 cut(s)	122, 147
BmgT120I	GGNCC	3 cut(s)	88, 310, 417
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	231, 450
BsaJI	CCNNGG	2 cut(s)	148, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	148, 226
BseGI	GGATG	2 cut(s)	222, 400
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	486, 520
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	3 cut(s)	101, 104, 514
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	411
BsiEI	CGRYCG	1 cut(s)	415
BsiHKCI	CYCGRG	2 cut(s)	122, 147
BsiSI	CCGG	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	2 cut(s)	122, 147
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	18, 126, 171, 270, 412
BspACI	CCGC	6 cut(s)	67, 193, 313, 316, 371, 430
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	487, 519
BspDI	ATCGAT	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	15
BspPI	GGATC	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	148, 226
BssMI	GATC	5 cut(s)	18, 126, 171, 270, 412
BssNI	GRCGYC	2 cut(s)	231, 450
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	231, 450
BstDEI	CTNAG	2 cut(s)	495, 506
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	222, 400
BstKTI	GATC	5 cut(s)	21, 129, 174, 273, 415
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	5 cut(s)	18, 126, 171, 270, 412
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	419
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	222, 400
CaiI	CAGNNNCTG	1 cut(s)	388
CciI	TCATGA	1 cut(s)	15
Cfr13I	GGNCC	3 cut(s)	88, 310, 417
ClaI	ATCGAT	1 cut(s)	411
CseI	GACGC	4 cut(s)	220, 387, 458, 480
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	16, 352
CviJI	RGCY	5 cut(s)	49, 210, 266, 280, 367
CviKI_1	RGCY	5 cut(s)	49, 210, 266, 280, 367
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	495, 506
DpnI	GATC	5 cut(s)	20, 128, 173, 272, 414
DpnII	GATC	5 cut(s)	18, 126, 171, 270, 412
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	212
Eco47I	GGWCC	3 cut(s)	88, 310, 417
Eco88I	CYCGRG	2 cut(s)	122, 147
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	2 cut(s)	19, 355
FaiI	YATR	6 cut(s)	17, 353, 363, 447, 518, 520
FatI	CATG	2 cut(s)	15, 351
Fnu4HI	GCNGC	3 cut(s)	316, 430, 433
FokI	GGATG	2 cut(s)	209, 407
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	316, 430, 433
GluI	GCNGC	3 cut(s)	316, 430, 433
GsaI	CCCAGC	1 cut(s)	49
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	458
HgaI	GACGC	4 cut(s)	220, 387, 458, 480
Hin1I	GRCGYC	2 cut(s)	231, 450
Hin1II	CATG	2 cut(s)	19, 355
HinfI	GANTC	6 cut(s)	143, 243, 286, 295, 304, 502
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	242, 403, 496, 509
Hpy188III	TCNNGA	7 cut(s)	16, 100, 124, 147, 205, 308, 439
Hpy99I	CGWCG	3 cut(s)	278, 333, 403
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	495, 506
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	231, 450
Hsp92II	CATG	2 cut(s)	19, 355
Kzo9I	GATC	5 cut(s)	18, 126, 171, 270, 412
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	385
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	232, 384
MalI	GATC	5 cut(s)	20, 128, 173, 272, 414
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	5 cut(s)	18, 126, 171, 270, 412
MboII	GAAGA	2 cut(s)	16, 43
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	39, 60
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	1 cut(s)	381
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeII	GATC	5 cut(s)	18, 126, 171, 270, 412
NlaIII	CATG	2 cut(s)	19, 355
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	299, 342
PfeI	GAWTC	5 cut(s)	143, 243, 286, 295, 304
PkrI	GCNGC	3 cut(s)	317, 431, 434
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	88, 310, 417
PstNI	CAGNNNCTG	1 cut(s)	388
PvuI	CGATCG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	316, 430, 433
Sau3AI	GATC	5 cut(s)	18, 126, 171, 270, 412
Sau96I	GGNCC	3 cut(s)	88, 310, 417
SchI	GAGTC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	5 cut(s)	51, 75, 123, 171, 192
SfaNI	GCATC	1 cut(s)	385
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	3 cut(s)	88, 310, 417
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	39, 60
SsiI	CCGC	6 cut(s)	67, 193, 313, 316, 371, 430
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	6 cut(s)	84, 123, 276, 293, 328, 411
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	39, 60
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	2 cut(s)	318, 432
TfiI	GAWTC	5 cut(s)	143, 243, 286, 295, 304
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	17, 43
TspGWI	ACGGA	1 cut(s)	346
VpaK11BI	GGWCC	3 cut(s)	88, 310, 417
XhoI	CTCGAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.