Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010640.1

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Forward (+)

73933 .. 74466

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010640.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggagaagtcatgcacgctcttggtccactttgacaagggcacgccggccctggccaacgagatcaaagaagctctggaaggaaacaacgtcaaagccaaaactgaagccatgaagaaggaaatcatgatcttgctcaacggtgacacaattcaccattatccgctaccttctcccctcaaggaccacaccatccagaagcttctcctcttttaccttgagatcattgacaagacagattcccgaggcaaagttgtgtcggagatgatcctcatctgctataacctccgcaacaatctccagagccctaataagtacatccacggagttaagctccgattcttgtgccgattgaacgagtccgagatcgtcgagccgttgattccttcgattctggaaaatctcgagcatcgccacccgttcgttcgactaaatgtcgtcaacgcaatcatgtctgtgtatagtcttccgcagggtgagcaattactggtggatgcgccggagattatcaatcggttcttggcttcagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

177

Amino Acids

20.18

Weight (kDa)

6.65

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	164, 289, 470
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	126, 510
AfaI	GTAC	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	355
AhdI	GACNNNNNGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	3 cut(s)	74, 202, 334
AluI	AGCT	3 cut(s)	74, 202, 334
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	2 cut(s)	243, 404
AoxI	GGCC	2 cut(s)	48, 54
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	3 cut(s)	25, 49, 184
AsuHPI	GGTGA	3 cut(s)	146, 155, 488
AvaI	CYCGRG	2 cut(s)	243, 404
AvaII	GGWCC	2 cut(s)	25, 184
BaeGI	GKGCMC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	458
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	25, 184
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmeT110I	CYCGRG	2 cut(s)	243, 404
BmgT120I	GGNCC	3 cut(s)	25, 49, 184
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	418, 484
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BpmI	CTGGAG	1 cut(s)	284
BpuEI	CTTGAG	2 cut(s)	164, 239
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	51, 244, 322
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	51, 244, 322
BseGI	GGATG	3 cut(s)	192, 318, 499
BseJI	GATNNNNATC	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	44
BshFI	GGCC	2 cut(s)	50, 56
BsiHKCI	CYCGRG	2 cut(s)	243, 404
BsiSI	CCGG	2 cut(s)	47, 500
BsnI	GGCC	2 cut(s)	50, 56
BsoBI	CYCGRG	2 cut(s)	243, 404
Bsp1286I	GDGCHC	2 cut(s)	44, 308
Bsp143I	GATC	5 cut(s)	63, 129, 222, 267, 366
BspACI	CCGC	3 cut(s)	164, 289, 470
BspANI	GGCC	2 cut(s)	50, 56
BspHI	TCATGA	1 cut(s)	126
BspPI	GGATC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	51, 244, 322
BssMI	GATC	5 cut(s)	63, 129, 222, 267, 366
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	17, 44, 48
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	192, 318, 499
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	5 cut(s)	66, 132, 225, 270, 369
BstMBI	GATC	5 cut(s)	63, 129, 222, 267, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	50, 56
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	192, 318, 499
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	17, 44, 48
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	25, 49, 184
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	4 cut(s)	12, 112, 127, 451
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	5 cut(s)	65, 131, 224, 269, 368
DpnII	GATC	5 cut(s)	63, 129, 222, 267, 366
DriI	GACNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	25, 184
Eco57I	CTGAAG	2 cut(s)	126, 510
Eco88I	CYCGRG	2 cut(s)	243, 404
EcoRII	CCWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	4 cut(s)	15, 115, 130, 454
FaiI	YATR	6 cut(s)	13, 113, 128, 282, 452, 462
FatI	CATG	4 cut(s)	11, 111, 126, 450
FokI	GGATG	3 cut(s)	179, 305, 506
FriOI	GRGCYC	1 cut(s)	308
GlaI	GCGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	50, 56
HapII	CCGG	2 cut(s)	47, 500
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	4 cut(s)	15, 115, 130, 454
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	5 cut(s)	239, 339, 359, 382, 391
HpaII	CCGG	2 cut(s)	47, 500
HphI	GGTGA	3 cut(s)	146, 155, 488
Hpy166II	GTNNAC	2 cut(s)	28, 442
Hpy188I	TCNGA	3 cut(s)	262, 338, 364
Hpy188III	TCNNGA	7 cut(s)	77, 127, 196, 243, 301, 395, 404
Hpy8I	GTNNAC	2 cut(s)	28, 442
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	74, 112, 180, 396
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	15, 115, 130, 454
HspAI	GCGC	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	63, 129, 222, 267, 366
LmnI	GCTCC	1 cut(s)	339
LweI	GCATC	2 cut(s)	418, 484
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	5 cut(s)	65, 131, 224, 269, 368
MboI	GATC	5 cut(s)	63, 129, 222, 267, 366
MboII	GAAGA	2 cut(s)	127, 458
MhlI	GDGCHC	2 cut(s)	44, 308
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	150, 482
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	5 cut(s)	188, 218, 239, 281, 296
Mox20I	TGGCCA	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	455
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	2 cut(s)	47, 500
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	478
NaeI	GCCGGC	1 cut(s)	48
NdeII	GATC	5 cut(s)	63, 129, 222, 267, 366
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	15, 115, 130, 454
NmuCI	GTSAC	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	48
PfeI	GAWTC	4 cut(s)	239, 339, 382, 391
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	25, 49, 184
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	5 cut(s)	63, 129, 222, 267, 366
Sau96I	GGNCC	3 cut(s)	25, 49, 184
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	44, 308
SetI	ASST	7 cut(s)	76, 93, 172, 204, 219, 288, 336
SfaNI	GCATC	2 cut(s)	418, 484
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	2 cut(s)	25, 184
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	3 cut(s)	179, 218, 404
SmoI	CTYRAG	3 cut(s)	179, 218, 404
Sse9I	AATT	2 cut(s)	150, 482
SsiI	CCGC	3 cut(s)	164, 289, 470
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	372, 389, 405, 427
TasI	AATT	2 cut(s)	150, 482
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	4 cut(s)	239, 339, 382, 391
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	25, 184
XhoI	CTCGAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.