Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Reverse (-)

35794701 .. 35795333

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCTTCCCTTGTGGACACCCACGCTCCTTCGCCCGATTCTCGCACGATTCCGGCAGGACCGCCTTCATCTTCTCCACGTCATGCACCCCATGCCTTCTTCTTCTTCTTCTTCCTCCTCGCTCCTTTTCTCTCTTCACTATCCAATCCGTCACAAAATTAAAAGGACATGGCCGGCTCGAAATGGCGCTCCTCATCGGACATGGCCGGGCACCCATCTAGGACAAGAATCGATAGATAGTCTCCGGTTCAAAGGAAACGACGTTGAAGCCAAGATCGAAGCCATGAAGAAGGCAATCATGATCTTGCTCAACGGCGACACAATTCCCCAGCTCTTCATCACAATTATCCGCTACGTCCTCCCCTTCAAGGACCACACCGTCCGTAAGCTTCTCCTCCTCTACCTCGAGATCATTAACAAGACAGATTCCCGAGGCAAAGTTCTCTCGGAGATGATCCTCAACCGCCGTAACCTCCGCAACAATCTCCGAGCCCTAACGAGTACATCCGCGGCGTCACGCTCCGATTCCTCTCGCCTATTGAACAAGGCCGAGATTGTCGAGCCGTTGATTCGGTCGATTCGGCGAATCCGGAGCACCGCCGCTCGTTCATTTGATGGAACGCCGTCGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

210

Amino Acids

24.03

Weight (kDa)

11.39

Isoelectric Point (pI)

66.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	86 - 144	5.8e-08	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	602
AccII	CGCG	1 cut(s)	509
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	8 cut(s)	61, 349, 463, 475, 507, 509, 597, 600
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	2 cut(s)	170, 203
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	250, 266, 367, 541
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	2 cut(s)	331, 388
AluI	AGCT	2 cut(s)	331, 388
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	2 cut(s)	404, 429
Aor13HI	TCCGGA	1 cut(s)	588
AoxI	GGCC	3 cut(s)	170, 203, 546
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	58, 370
AsuC2I	CCSGG	1 cut(s)	207
AvaI	CYCGRG	2 cut(s)	404, 429
AvaII	GGWCC	2 cut(s)	58, 370
BaeGI	GKGCMC	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	596
BccI	CCATC	2 cut(s)	222, 608
BceAI	ACGGC	5 cut(s)	328, 450, 547, 607, 613
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	2 cut(s)	510, 600
BlsI	GCNGC	2 cut(s)	511, 601
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	58, 370
BmeT110I	CYCGRG	2 cut(s)	404, 429
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	58, 370
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	430, 507
BsaWI	WCCGGW	2 cut(s)	243, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	430, 507
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseRI	GAGGAG	4 cut(s)	106, 180, 383, 386
BseSI	GKGCMC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	3 cut(s)	172, 205, 548
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	2 cut(s)	404, 429
BsiSI	CCGG	5 cut(s)	52, 173, 206, 244, 589
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	172, 205, 548
BsoBI	CYCGRG	2 cut(s)	404, 429
Bsp1286I	GDGCHC	3 cut(s)	212, 493, 596
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	273, 300, 408, 453
BspACI	CCGC	8 cut(s)	61, 349, 463, 475, 507, 509, 597, 600
BspANI	GGCC	3 cut(s)	172, 205, 548
BspDI	ATCGAT	1 cut(s)	230
BspEI	TCCGGA	1 cut(s)	588
BspFNI	CGCG	1 cut(s)	509
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	430, 507
BssMI	GATC	4 cut(s)	273, 300, 408, 453
BssNI	GRCGYC	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	138, 338
BstACI	GRCGYC	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	509
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	4 cut(s)	276, 303, 411, 456
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	4 cut(s)	273, 300, 408, 453
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	172, 205, 548
BsuTUI	ATCGAT	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	58, 370
Cfr42I	CCGCGG	1 cut(s)	510
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	6 cut(s)	82, 91, 168, 201, 283, 298
CviQI	GTAC	1 cut(s)	501
DpnI	GATC	4 cut(s)	275, 302, 410, 455
DpnII	GATC	4 cut(s)	273, 300, 408, 453
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	2 cut(s)	170, 203
Eam1104I	CTCTTC	2 cut(s)	138, 338
EarI	CTCTTC	2 cut(s)	138, 338
Eco24I	GRGCYC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	58, 370
Eco88I	CYCGRG	2 cut(s)	404, 429
EcoT38I	GRGCYC	1 cut(s)	493
FaeI	CATG	6 cut(s)	85, 94, 171, 204, 286, 301
FaiI	YATR	6 cut(s)	83, 92, 169, 202, 284, 299
FatI	CATG	6 cut(s)	81, 90, 167, 200, 282, 297
Fnu4HI	GCNGC	2 cut(s)	510, 600
FokI	GGATG	1 cut(s)	490
FriOI	GRGCYC	1 cut(s)	493
Fsp4HI	GCNGC	2 cut(s)	510, 600
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	510, 600
GsaI	CCCAGC	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	172, 205, 548
HapII	CCGG	5 cut(s)	52, 173, 206, 244, 589
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	6 cut(s)	85, 94, 171, 204, 286, 301
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	8 cut(s)	37, 48, 227, 425, 524, 568, 577, 585
HpaII	CCGG	5 cut(s)	52, 173, 206, 244, 589
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	198, 448, 488, 523
Hpy188III	TCNNGA	4 cut(s)	298, 406, 429, 589
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	2 cut(s)	263, 628
HpyAV	CCTTC	5 cut(s)	38, 74, 105, 283, 373
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	3 cut(s)	78, 261, 354
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpySE526I	ACGT	3 cut(s)	78, 261, 354
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	6 cut(s)	85, 94, 171, 204, 286, 301
HspAI	GCGC	1 cut(s)	186
Kpn2I	TCCGGA	1 cut(s)	588
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
KspI	CCGCGG	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	273, 300, 408, 453
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	5 cut(s)	30, 126, 193, 524, 591
LpnPI	CCDG	7 cut(s)	41, 65, 186, 219, 257, 341, 602
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	3 cut(s)	78, 261, 354
MaeIII	GTNAC	3 cut(s)	149, 467, 513
MalI	GATC	4 cut(s)	275, 302, 410, 455
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	4 cut(s)	273, 300, 408, 453
MboII	GAAGA	9 cut(s)	62, 90, 93, 96, 99, 102, 125, 298, 325
MhlI	GDGCHC	3 cut(s)	212, 493, 596
MluCI	AATT	3 cut(s)	156, 321, 342
MroI	TCCGGA	1 cut(s)	588
MroNI	GCCGGC	1 cut(s)	172
MseI	TTAA	2 cut(s)	159, 414
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	5 cut(s)	52, 173, 206, 244, 589
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	91
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	4 cut(s)	273, 300, 408, 453
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	85, 94, 171, 204, 286, 301
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	2 cut(s)	149, 513
PaeR7I	CTCGAG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	626
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	8 cut(s)	37, 48, 227, 425, 524, 568, 577, 585
PkrI	GCNGC	2 cut(s)	511, 601
PspFI	CCCAGC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	58, 370
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
SacII	CCGCGG	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	159, 414
SatI	GCNGC	2 cut(s)	510, 600
Sau3AI	GATC	4 cut(s)	273, 300, 408, 453
Sau96I	GGNCC	2 cut(s)	58, 370
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	3 cut(s)	212, 493, 596
SetI	ASST	7 cut(s)	81, 264, 333, 357, 390, 405, 474
Sfr274I	CTCGAG	1 cut(s)	404
Sfr303I	CCGCGG	1 cut(s)	510
SgrBI	CCGCGG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	58, 370
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	3 cut(s)	156, 321, 342
SsiI	CCGC	8 cut(s)	61, 349, 463, 475, 507, 509, 597, 600
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	3 cut(s)	81, 264, 357
TaqI	TCGA	6 cut(s)	178, 230, 276, 405, 558, 575
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	3 cut(s)	156, 321, 342
TatI	WGTACW	1 cut(s)	500
TauI	GCSGC	2 cut(s)	512, 602
TfiI	GAWTC	8 cut(s)	37, 48, 227, 425, 524, 568, 577, 585
Tru1I	TTAA	2 cut(s)	159, 414
Tru9I	TTAA	2 cut(s)	159, 414
TseFI	GTSAC	2 cut(s)	149, 513
Tsp45I	GTSAC	2 cut(s)	149, 513
TspDTI	ATGAA	4 cut(s)	56, 299, 325, 597
TspGWI	ACGGA	2 cut(s)	137, 371
VpaK11BI	GGWCC	2 cut(s)	58, 370
XhoI	CTCGAG	1 cut(s)	404
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.