Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005385.1

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Forward (+)

83391 .. 83918

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005385.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgatcttgctcaacggcgacacaattccccagctcttcatcataattatccgctacgtcctccccttcgaggaccacaccgtccagaagcttctcttcctctacctcgagatcattaacaagacagatttccgaggcaaagttctcccggaggtgatcctcaactgccagaacctctgcaacaatctccagagccctaacgagtacatctgcggcgtcacgctccgattcctctgccgattgaacaaggccgagatcgtcgagccgttgattcagtcgattctggcgaatctggagcatcgccgctcgttcgttcgacgaaacgctgtcagcgtagtcatgtctgtgtataggcttccgcagggtgagcagttactggtggatgcgccggagattatcgatcggtcctccatttgccactgcttctggaaatatgacgccgtgccggagagtgagagagaaagagagggagagggagcgtctgagaggagtctcagagagaatatattaggagagtttattaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

175

Amino Acids

20.28

Weight (kDa)

5.46

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	4 cut(s)	52, 213, 304, 359
AclWI	GGATC	1 cut(s)	151
AcyI	GRCGYC	2 cut(s)	216, 438
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	2 cut(s)	34, 91
AluI	AGCT	2 cut(s)	34, 91
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	249
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	73, 405
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	166, 377
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	73, 405
BanII	GRGCYC	1 cut(s)	197
BceAI	ACGGC	3 cut(s)	31, 250, 425
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	497
BisI	GCNGC	2 cut(s)	214, 304
BlsI	GCNGC	2 cut(s)	215, 305
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	73, 405
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	73, 405
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	307, 373
BpmI	CTGGAG	2 cut(s)	173, 314
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	216, 438
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	474, 508
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	399
BsiEI	CGRYCG	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	149, 389, 446
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	5 cut(s)	3, 111, 156, 255, 400
BspACI	CCGC	4 cut(s)	52, 213, 304, 359
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	475, 507
BspDI	ATCGAT	1 cut(s)	399
BspPI	GGATC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	5 cut(s)	3, 111, 156, 255, 400
BssNI	GRCGYC	2 cut(s)	216, 438
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	41, 101
BstACI	GRCGYC	2 cut(s)	216, 438
BstDEI	CTNAG	2 cut(s)	483, 494
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	5 cut(s)	6, 114, 159, 258, 403
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	5 cut(s)	3, 111, 156, 255, 400
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	251
BsuTUI	ATCGAT	1 cut(s)	399
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	73, 405
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	3 cut(s)	205, 446, 468
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	6 cut(s)	34, 91, 195, 251, 265, 355
CviKI_1	RGCY	6 cut(s)	34, 91, 195, 251, 265, 355
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	483, 494
DpnI	GATC	5 cut(s)	5, 113, 158, 257, 402
DpnII	GATC	5 cut(s)	3, 111, 156, 255, 400
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	2 cut(s)	41, 101
EarI	CTCTTC	2 cut(s)	41, 101
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	73, 405
Eco88I	CYCGRG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	1 cut(s)	343
FaiI	YATR	5 cut(s)	44, 341, 351, 435, 506
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	214, 304
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	214, 304
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	214, 304
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	2 cut(s)	173, 314
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	149, 389, 446
HgaI	GACGC	3 cut(s)	205, 446, 468
HhaI	GCGC	1 cut(s)	388
Hin1I	GRCGYC	2 cut(s)	216, 438
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	5 cut(s)	228, 271, 280, 289, 490
HpaII	CCGG	3 cut(s)	149, 389, 446
HphI	GGTGA	2 cut(s)	166, 377
Hpy188I	TCNGA	4 cut(s)	134, 227, 484, 497
Hpy188III	TCNNGA	5 cut(s)	85, 109, 190, 293, 427
Hpy99I	CGWCG	2 cut(s)	263, 321
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	2 cut(s)	483, 494
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	2 cut(s)	216, 438
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	5 cut(s)	3, 111, 156, 255, 400
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	228, 295, 476
LweI	GCATC	2 cut(s)	307, 373
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	217, 372
MalI	GATC	5 cut(s)	5, 113, 158, 257, 402
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	5 cut(s)	3, 111, 156, 255, 400
MboII	GAAGA	2 cut(s)	28, 88
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	24, 45, 523
MlyI	GAGTC	1 cut(s)	499
MseI	TTAA	3 cut(s)	117, 522, 526
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	3 cut(s)	149, 389, 446
MspR9I	CCNGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	3, 111, 156, 255, 400
NlaIII	CATG	1 cut(s)	343
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	217
PacI	TTAATTAA	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	284, 330
PfeI	GAWTC	4 cut(s)	228, 271, 280, 289
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	215, 305
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	73, 405
PstNI	CAGNNNCTG	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	117, 522, 526
SatI	GCNGC	2 cut(s)	214, 304
Sau3AI	GATC	5 cut(s)	3, 111, 156, 255, 400
Sau96I	GGNCC	2 cut(s)	73, 405
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	36, 60, 93, 108, 156, 177
SfaNI	GCATC	2 cut(s)	307, 373
Sfr274I	CTCGAG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	73, 405
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	24, 45, 523
SsiI	CCGC	4 cut(s)	52, 213, 304, 359
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	6 cut(s)	69, 108, 261, 278, 316, 399
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	24, 45, 523
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	216, 306
TfiI	GAWTC	4 cut(s)	228, 271, 280, 289
Tru1I	TTAA	3 cut(s)	117, 522, 526
Tru9I	TTAA	3 cut(s)	117, 522, 526
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	73, 405
VspI	ATTAAT	1 cut(s)	522
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.