Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001437.1

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Reverse (-)

18443 .. 20610

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001437.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgatgacgttgacgaaggtgataggtcagcgaaggtgcatatcttattcttcttcatctcccactgctccctcagcacactttggtcatggagaagtcatgcatcctcttggtccacttcgacaagggaatgccgctctcgaaggaaatggcttcttagccaagatcgaagccctcaagcaatcaatcatgatcttgctcaatggcaacacaatccagctcttcatcaccataatccgctatgttctcccctccgaggaccacactgtccaaaagcttctattgctctacctcgagataattgacaagacaaattccagaggcaaagttctgccggagatatcctcatctgccagaacctctctgatgattccttcaattctcgccaatctagagcatcgccacccgtttgttaaacgaaatgtcgtcttcgtaatcatgtttgtgtataggcatctgctcgagttccaaccaccgcttgcaaacgagagagcaggagttgagttgccgcaagatcatttgatcggccgctgccaagtaaagctttccgacgaccacgttgacgctcgagctcgggtagtggaagtgtggattgtggtgttgttctctctcattggcctcggtggtcctcgggtgggttgcgaatcagagctccggattttgaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

222

Amino Acids

24.75

Weight (kDa)

9.1

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	654
AciI	CCGC	5 cut(s)	135, 238, 476, 509, 529
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	256, 635
AgsI	TTSAA	2 cut(s)	378, 664
AluBI	AGCT	5 cut(s)	220, 277, 544, 572, 652
AluI	AGCT	5 cut(s)	220, 277, 544, 572, 652
Alw21I	GWGCWC	2 cut(s)	574, 654
Ama87I	CYCGRG	5 cut(s)	293, 461, 567, 573, 630
Aor13HI	TCCGGA	1 cut(s)	654
AoxI	GGCC	2 cut(s)	526, 616
ApeKI	GCWGC	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	313
AspS9I	GGNCC	3 cut(s)	113, 259, 626
AsuHPI	GGTGA	2 cut(s)	31, 220
AvaI	CYCGRG	5 cut(s)	293, 461, 567, 573, 630
AvaII	GGWCC	3 cut(s)	113, 259, 626
BanII	GRGCYC	2 cut(s)	574, 654
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	574, 654
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	518
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	4 cut(s)	135, 509, 529, 532
BlsI	GCNGC	4 cut(s)	136, 510, 530, 533
Bme18I	GGWCC	3 cut(s)	113, 259, 626
BmeT110I	CYCGRG	5 cut(s)	293, 461, 567, 573, 630
BmgT120I	GGNCC	3 cut(s)	113, 259, 626
BmsI	GCATC	3 cut(s)	112, 406, 463
BpiI	GAAGAC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	255, 619, 629
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 635
BseAI	TCCGGA	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	255, 619, 629
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	256, 635
BseMII	CTCAG	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	526
BseXI	GCAGC	1 cut(s)	518
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	528, 618
BsiEI	CGRYCG	1 cut(s)	529
BsiHKAI	GWGCWC	2 cut(s)	574, 654
BsiHKCI	CYCGRG	5 cut(s)	293, 461, 567, 573, 630
BsiSI	CCGG	2 cut(s)	335, 655
BslI	CCNNNNNNNGG	2 cut(s)	256, 635
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	528, 618
BsoBI	CYCGRG	5 cut(s)	293, 461, 567, 573, 630
Bsp1286I	GDGCHC	2 cut(s)	574, 654
Bsp13I	TCCGGA	1 cut(s)	654
Bsp143I	GATC	4 cut(s)	165, 192, 514, 522
BspACI	CCGC	5 cut(s)	135, 238, 476, 509, 529
BspANI	GGCC	2 cut(s)	528, 618
BspCNI	CTCAG	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	255, 619, 629
BssMI	GATC	4 cut(s)	165, 192, 514, 522
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	73, 157
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	4 cut(s)	168, 195, 517, 525
BstMBI	GATC	4 cut(s)	165, 192, 514, 522
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 283
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	1 cut(s)	421
BstZI	CGGCCG	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	528, 618
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 264
Cac8I	GCNNGC	1 cut(s)	480
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	113, 259, 626
CseI	GACGC	1 cut(s)	572
CviAII	CATG	4 cut(s)	89, 100, 190, 439
DdeI	CTNAG	2 cut(s)	73, 157
DpnI	GATC	4 cut(s)	167, 194, 516, 524
DpnII	GATC	4 cut(s)	165, 192, 514, 522
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	526
EagI	CGGCCG	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Ecl136II	GAGCTC	2 cut(s)	572, 652
EclXI	CGGCCG	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	574, 654
Eco32I	GATATC	1 cut(s)	342
Eco47I	GGWCC	3 cut(s)	113, 259, 626
Eco52I	CGGCCG	1 cut(s)	526
Eco53kI	GAGCTC	2 cut(s)	572, 652
Eco88I	CYCGRG	5 cut(s)	293, 461, 567, 573, 630
EcoICRI	GAGCTC	2 cut(s)	572, 652
EcoRV	GATATC	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	574, 654
FaeI	CATG	4 cut(s)	92, 103, 193, 442
FaiI	YATR	8 cut(s)	41, 90, 101, 191, 233, 243, 440, 450
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	4 cut(s)	88, 99, 189, 438
Fnu4HI	GCNGC	4 cut(s)	135, 509, 529, 532
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	574, 654
Fsp4HI	GCNGC	4 cut(s)	135, 509, 529, 532
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	4 cut(s)	135, 509, 529, 532
HaeIII	GGCC	2 cut(s)	528, 618
HapII	CCGG	2 cut(s)	335, 655
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	4 cut(s)	92, 103, 193, 442
HincII	GTYRAC	2 cut(s)	12, 562
HindII	GTYRAC	2 cut(s)	12, 562
HindIII	AAGCTT	2 cut(s)	275, 542
HinfI	GANTC	2 cut(s)	370, 644
HpaII	CCGG	2 cut(s)	335, 655
HphI	GGTGA	2 cut(s)	31, 220
Hpy166II	GTNNAC	3 cut(s)	12, 116, 562
Hpy188I	TCNGA	4 cut(s)	256, 366, 550, 649
Hpy188III	TCNNGA	6 cut(s)	140, 190, 295, 318, 392, 655
Hpy8I	GTNNAC	3 cut(s)	12, 116, 562
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	4 cut(s)	10, 27, 137, 384
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	8, 558
HpyCH4V	TGCA	3 cut(s)	39, 103, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 283
HpyF3I	CTNAG	2 cut(s)	73, 157
HpySE526I	ACGT	2 cut(s)	8, 558
Hsp92II	CATG	4 cut(s)	92, 103, 193, 442
Kpn2I	TCCGGA	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	165, 192, 514, 522
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	73, 657
LpnPI	CCDG	5 cut(s)	230, 331, 348, 367, 480
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	3 cut(s)	112, 406, 463
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	8, 558
MalI	GATC	4 cut(s)	167, 194, 516, 524
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	4 cut(s)	165, 192, 514, 522
MboII	GAAGA	4 cut(s)	42, 45, 214, 421
MhlI	GDGCHC	2 cut(s)	574, 654
MluCI	AATT	3 cut(s)	300, 313, 378
MmeI	TCCRAC	2 cut(s)	493, 573
Mph1103I	ATGCAT	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	654
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	531
MspI	CCGG	2 cut(s)	335, 655
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	74, 283
NdeII	GATC	4 cut(s)	165, 192, 514, 522
NlaIII	CATG	4 cut(s)	92, 103, 193, 442
NsiI	ATGCAT	1 cut(s)	105
PaeR7I	CTCGAG	3 cut(s)	293, 461, 567
PagI	TCATGA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	370, 644
PkrI	GCNGC	4 cut(s)	136, 510, 530, 533
Psp124BI	GAGCTC	2 cut(s)	574, 654
PspPI	GGNCC	3 cut(s)	113, 259, 626
PspXI	VCTCGAGB	2 cut(s)	461, 567
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	2 cut(s)	574, 654
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	4 cut(s)	135, 509, 529, 532
Sau3AI	GATC	4 cut(s)	165, 192, 514, 522
Sau96I	GGNCC	3 cut(s)	113, 259, 626
SduI	GDGCHC	2 cut(s)	574, 654
SfaNI	GCATC	3 cut(s)	112, 406, 463
Sfr274I	CTCGAG	3 cut(s)	293, 461, 567
SinI	GGWCC	3 cut(s)	113, 259, 626
SlaI	CTCGAG	3 cut(s)	293, 461, 567
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	4 cut(s)	176, 293, 461, 567
SmoI	CTYRAG	4 cut(s)	176, 293, 461, 567
Sse9I	AATT	3 cut(s)	300, 313, 378
SsiI	CCGC	5 cut(s)	135, 238, 476, 509, 529
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	2 cut(s)	574, 654
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	11, 561
TaqI	TCGA	6 cut(s)	121, 141, 168, 294, 462, 568
TasI	AATT	3 cut(s)	300, 313, 378
TauI	GCSGC	3 cut(s)	137, 511, 531
TfiI	GAWTC	2 cut(s)	370, 644
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	70, 271
TseI	GCWGC	1 cut(s)	531
TspDTI	ATGAA	2 cut(s)	45, 214
TspRI	CASTG	2 cut(s)	70, 271
VpaK11BI	GGWCC	3 cut(s)	113, 259, 626
XapI	RAATTY	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	391
XhoI	CTCGAG	3 cut(s)	293, 461, 567
XspI	CTAG	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.