Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018535

Physical Location & Seq

Genomic Coordinates Forward (+)

25650015 .. 25650200

Gene Structure 186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAAGAAGGCAATCATGATCTTGCTCAACGGTGACACAATTCCCCAACTCTTCATCACCATTATCCGCTACGTCCTCCCCTCCGAGGACCACACCGTCCAGAAGCTTCTCCTCCTCTACCTCGAGATCATTAACAAGACAGATTCCCGAGGCAAAGTTCTCCCGGAGATGATCCTCAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

61

Amino Acids

7.03

Weight (kDa)

7.89

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	1 - 49	6.2e-06	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018535)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07040
rosa_multiflora	Rmu_sc0001136.1_g000002 Rmu_sc0001437.1_g000003 Rmu_sc0005385.1_g000021 Rmu_sc0010640.1_g000008
rosa_roxburghii	Rroxscaffold_4G00292690 Rroxscaffold_5G00356490
rosa_samantha	Rh5DG227500 Rh6AG009200 Rh6AG111800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwI	GGATC	1 cut(s)	166
Ama87I	CYCGRG	2 cut(s)	122, 147
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	44, 49
AvaI	CYCGRG	2 cut(s)	122, 147
AvaII	GGWCC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	2 cut(s)	122, 147
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	84, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	84, 148
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	101, 104
BsiHKCI	CYCGRG	2 cut(s)	122, 147
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	85
BsoBI	CYCGRG	2 cut(s)	122, 147
Bsp143I	GATC	3 cut(s)	18, 126, 171
BspACI	CCGC	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	15
BspPI	GGATC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	84, 148
BssMI	GATC	3 cut(s)	18, 126, 171
Bst4CI	ACNGT	2 cut(s)	32, 97
Bst6I	CTCTTC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	21, 129, 174
BstMBI	GATC	3 cut(s)	18, 126, 171
BstSCI	CCNGG	1 cut(s)	162
CciI	TCATGA	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	1 cut(s)	106
CviKI_1	RGCY	1 cut(s)	106
DpnI	GATC	3 cut(s)	20, 128, 173
DpnII	GATC	3 cut(s)	18, 126, 171
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	88
Eco88I	CYCGRG	2 cut(s)	122, 147
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
FspBI	CTAG	1 cut(s)	184
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	44, 49
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	4 cut(s)	16, 100, 124, 147
HpyCH4III	ACNGT	2 cut(s)	32, 97
HpyCH4IV	ACGT	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	18, 126, 171
LpnPI	CCDG	2 cut(s)	113, 177
MaeI	CTAG	1 cut(s)	184
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	20, 128, 173
MboI	GATC	3 cut(s)	18, 126, 171
MboII	GAAGA	2 cut(s)	16, 43
MluCI	AATT	1 cut(s)	39
MnlI	CCTC	8 cut(s)	79, 86, 91, 122, 125, 131, 143, 185
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	164
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	18, 126, 171
NlaIII	CATG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	18, 126, 171
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	3 cut(s)	75, 108, 123
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	32, 97
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	17, 43
VpaK11BI	GGWCC	1 cut(s)	88
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.