Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0015112

Physical Location & Seq

Genomic Coordinates Forward (+)

69870 .. 76061

Gene Structure 6192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2970 bp

atgggatccctgaagagaaaatcggaggaagatgactctgcagcagctccacccaaagtagccaagtcggagaacaagaacactcttgaaatcgtcaacaatgaacagatggtctgcgtgcacgacgtgtcgtaccctgagggttacgttcctccgccgccgccgccttcttcttccgaacccgccaagaaattccccttcactctcgacccttttcagtccgaagccatcaaatgcattgaaaatggggagtccgtcatggtgtctgctcacacatctgctggaaaaactgttgttgcgtcgtacgcgattgcgttgtgtttgcgtaataagcaacgtgtgatatacaccgcacccatcaaagctctcagcaaccaaaagtacagagagttcaaagaggagttttcggatgttgggttgatgactggagatgtaacaatcgaccccaatgcttcgtgcttggtgatgaccacggaaatctggcggagcatgcagtacaaaggatcagaggtgacgcgagaggtggcttggataatctttgatgaggtgcattacatgagggatcttgagagaggtgtggtgtgggaagagagcattgttatggctccaaagaatgctcgctttgtcttcctctcagcaactgtgcccaatgctaaggaatttgctgattggctcgcaaaggttcatcgacagccttgccacattgtctatacggattataggcccactcctcttcagcattatattttcccctccggaggggatggtctgtacttggtagttgatgaaaaaggaaagtttcgtgaggacagctttcaacaagctcttaatgcacttgctcctgcctccgacgctgctaagaagaaggaaaatggaaagtggcagaagggtctggtcatcggcaaggccgctgaagaaagcgatatcttcaagatggtgaaaatgataattcagcgtcaatatgaccctgtcatacttttcagctttagcaaaagggaatgtgaattacttgcaatgcagatggcaaagttggacctaaatggggacagtgagaaagcaaacatagaaaccatcttctggagtgctatggatatgctttcagacgacgataagaagttaccccaggttaccactatgttacccctgttaatgcgtggaataggtgtgcatcattctggtttgattcccattctaaaggaagtgattgagatattatttcaggaaggtcttatcaagtgtttatttgcaacagagaccttcagcataggactgaacatgcctgcgaaaactgttgtatttaccaatgtccggaaatttgatggtaataagttcagatggataaccagtggtgagtatatacaaatgagtggtcgtgctggtcgccggggtattgataaacgtgggatatgcatacttatggtagatgagaagctagagccatctactgccaaaatgatgcttaaaggaaatgctgatagtttgaacagtgcctttcatttaagctacaacatgcttctgaatcaattgcgctctgaagatggtaatccagaaaatttacttcgtaactcattctatcagttccaagctgatcgtgccattcccaatctggagaaacaaacaaaggagcttgagcaagagagggattcaattataattgaagaagaagatagtgtaaggaattattacaatctagtacagcaatacaagagtttaaagcaggatcttcgtgagattgtgatttatccaaagtactgcttaccatttctgaaacctggtaggcttgtgtcaatccaatgcacccgtgatgaagcttccgcttctttttctaccgaggaccatgtcacatggggtgttatacttaattttcaacgagtgaaaactgtttctgaagacgatgcagttaagagacctgaagattcaaactacacagtggatgttttgactaggtgtctggttggcacaaatggagttgcaaaaaaaacactcaaaattgttcctttgaaagaactgggagaacctgttgttgtttcgatttccatctctcagattaatagcatgagtcgactttgtatggtcataccaaatgatcttttgtcattacaagctcgagaaaacacactgaagaaagttcttgaaactctttcaagatttggagagaagattcctcttttagatcctgaagaagacatgaagattcaaagtaggtcgtacaaaaaagtggctcgtaggattgaggctttagagaacctgtttgacaggcatgaaattgcaaagtcaccactaattgagcaaaagctcaaggtttttcacatgaagcaggaattggcagcgaagatcaagtcaattaagaaaacaatgcgctcttcgactgcgttggcttttaaagatgaacttaaggcacgaaaacgtgttcttcggaggctaggatatgttactagcgatgatgttgtgcagttgaagggtaaggttgcttgtgaaatcagtagtgcagatgagttgaccctcacagagctcatgttcaatggcgttttcaaggacataaaggtagaagagatggtatctcttctctcatgttttgtttggcgggaaaaactaaaagatgctacaaaaccaagggaagaacttgacctgctcttcttgcaattacaagaaactgctcggagggtggctgaagttcagcttgagtgcaaggttgaaattgacatcgatagctttgtgagttcatttcggcctgatattatggaggctgcatatgcttgggcaaaaggctcaaaattttatgagataatgtcagttacaggggttttcgagggtagcttaatcagggcaatcaggagattagaggaagttcttcagcaacttatacacgcagccaattctattggagaaactgatcttgaatcaaaatttgaggaggctgtttcaaaaatcaagagagacattgtctttgcagcttccctatacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

989

Amino Acids

112.23

Weight (kDa)

6.58

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	68 - 215	3.1e-09	Type III restriction enzyme, res subunit
DEAD	PF00270	71 - 220	6.8e-27	DEAD/DEAH box helicase
DEXQc_Suv3	PF22527	92 - 202	2e-07	DEXQ-box helicase domain of Suv3
MTR4-like_stalk	PF21408	517 - 579	1.6e-20	Exosome RNA helicase MTR4-like, stalk
MTR4_beta-barrel	PF13234	582 - 787	1.1e-48	Mtr4-like, beta-barrel domain
DSHCT	PF08148	814 - 984	6.8e-55	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59760
fragaria_vesca	FvH4_5g28050 FvH4_5g28050 FvH4_5g28050
malus_domestica	MD08G1247600.v1.1
prunus_persica	Prupe.6G113400_v2.0.a1
pyrus_communis	pycom08g21450
rosa_chinensis	RchiOBHm_Chr7g0220221
rosa_laevigata	RLG00000002249
rosa_multiflora	Rmu_sc0001136.1_g000019
rosa_roxburghii	Rroxscaffold_3G00239700
rosa_rugosa	Rorug07G0191200
rosa_samantha	Rh7AG333300 Rh7CG350900 Rh7DG329600
rosa_wichuraiana	Rw7G028110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1652
Acc36I	ACCTGC	1 cut(s)	2637
AccB7I	CCANNNNNTGG	1 cut(s)	1077
AccI	GTMKAC	1 cut(s)	2062
AccII	CGCG	2 cut(s)	308, 517
AccIII	TCCGGA	2 cut(s)	755, 1308
AclWI	GGATC	5 cut(s)	13, 511, 570, 1728, 2168
AcsI	RAATTY	6 cut(s)	191, 659, 1313, 1552, 2774, 2906
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	8 cut(s)	134, 305, 383, 497, 773, 1695, 1751, 2210
AfiI	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
AflII	CTTAAG	1 cut(s)	2393
AflIII	ACRYGT	3 cut(s)	126, 337, 2407
AhdI	GACNNNNNGTC	1 cut(s)	1947
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	1122, 1771
AjuI	GAANNNNNNNTTGG	2 cut(s)	2306, 2338
Alw21I	GWGCWC	2 cut(s)	123, 2514
Alw26I	GTCTC	3 cut(s)	1247, 1900, 2931
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	5 cut(s)	13, 511, 570, 1728, 2168
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	2106
Aor13HI	TCCGGA	2 cut(s)	755, 1308
AoxI	GGCC	3 cut(s)	722, 906, 2729
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	7 cut(s)	41, 44, 854, 2327, 2747, 2870, 2951
ApoI	RAATTY	6 cut(s)	191, 659, 1313, 1552, 2774, 2906
ArsI	GACNNNNNNTTYG	6 cut(s)	1354, 1386, 2324, 2356, 2930, 2962
AseI	ATTAAT	1 cut(s)	2049
Asp700I	GAANNNNTTC	1 cut(s)	2850
AspLEI	GCGC	2 cut(s)	1530, 2361
AspS9I	GGNCC	3 cut(s)	723, 1033, 1834
AsuC2I	CCSGG	1 cut(s)	1385
AsuHPI	GGTGA	5 cut(s)	475, 523, 949, 1361, 2268
AvaI	CYCGRG	1 cut(s)	2106
AvaII	GGWCC	2 cut(s)	1033, 1834
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	2 cut(s)	123, 648
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	2514
BbsI	GAAGAC	3 cut(s)	619, 1896, 2190
Bbv12I	GWGCWC	2 cut(s)	123, 2514
BbvI	GCAGC	7 cut(s)	53, 56, 841, 2339, 2734, 2882, 2963
BcgI	CGANNNNNNTGC	6 cut(s)	431, 465, 678, 712, 1706, 1740
BciT130I	CCWGG	2 cut(s)	1124, 1773
BcnI	CCSGG	1 cut(s)	1385
BcoDI	GTCTC	3 cut(s)	1247, 1900, 2931
BfaI	CTAG	5 cut(s)	1433, 1691, 1944, 2423, 2436
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	2393
BfuAI	ACCTGC	1 cut(s)	2637
BmcAI	AGTACT	1 cut(s)	1751
Bme1390I	CCNGG	3 cut(s)	1124, 1385, 1773
Bme18I	GGWCC	2 cut(s)	1033, 1834
BmeRI	GACNNNNNGTC	1 cut(s)	1947
BmeT110I	CYCGRG	1 cut(s)	2106
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	723, 1033, 1834
BmiI	GGNNCC	2 cut(s)	7, 606
BmrFI	CCNGG	3 cut(s)	1124, 1385, 1773
BmrI	ACTGGG	1 cut(s)	2018
BmsI	GCATC	4 cut(s)	1177, 1446, 1885, 2590
BmuI	ACTGGG	1 cut(s)	2018
BpiI	GAAGAC	3 cut(s)	619, 1896, 2190
BpmI	CTGGAG	3 cut(s)	447, 1099, 1628
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	4 cut(s)	587, 1649, 2282, 2702
BpuMI	CCSGG	1 cut(s)	1385
Bsa29I	ATCGAT	1 cut(s)	2706
BsaBI	GATNNNNATC	2 cut(s)	1542, 2036
BsaI	GGTCTC	2 cut(s)	1247, 1900
BsaJI	CCNNGG	5 cut(s)	471, 1122, 1384, 1830, 2612
BsaWI	WCCGGW	2 cut(s)	755, 1308
BsaXI	ACNNNNNCTCC	2 cut(s)	2004, 2034
Bsc4I	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
Bse1I	ACTGG	3 cut(s)	430, 1344, 2013
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	1020
Bse8I	GATNNNNATC	2 cut(s)	1542, 2036
BseAI	TCCGGA	2 cut(s)	755, 1308
BseBI	CCWGG	2 cut(s)	1124, 1773
BseCI	ATCGAT	1 cut(s)	2706
BseDI	CCNNGG	5 cut(s)	471, 1122, 1384, 1830, 2612
BseGI	GGATG	3 cut(s)	415, 769, 1939
BseJI	GATNNNNATC	2 cut(s)	1542, 2036
BseLI	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	4 cut(s)	129, 382, 648, 2057
BseNI	ACTGG	3 cut(s)	430, 1344, 2013
BseRI	GAGGAG	3 cut(s)	413, 720, 2927
BseSI	GKGCMC	2 cut(s)	123, 648
BseXI	GCAGC	7 cut(s)	53, 56, 841, 2339, 2734, 2882, 2963
BsgI	GTGCAG	2 cut(s)	2471, 2508
Bsh1236I	CGCG	2 cut(s)	308, 517
BshFI	GGCC	3 cut(s)	724, 908, 2731
BshVI	ATCGAT	1 cut(s)	2706
BsiHKAI	GWGCWC	2 cut(s)	123, 2514
BsiHKCI	CYCGRG	1 cut(s)	2106
BsiSI	CCGG	3 cut(s)	756, 1309, 1384
BsiWI	CGTACG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	5 cut(s)	758, 759, 1042, 1077, 1308
BsmAI	GTCTC	3 cut(s)	1247, 1900, 2931
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	724, 908, 2731
Bso31I	GGTCTC	2 cut(s)	1247, 1900
BsoBI	CYCGRG	1 cut(s)	2106
Bsp1286I	GDGCHC	3 cut(s)	123, 648, 2514
Bsp13I	TCCGGA	2 cut(s)	755, 1308
Bsp143I	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
BspANI	GGCC	3 cut(s)	724, 908, 2731
BspCNI	CTCAG	4 cut(s)	130, 381, 647, 2056
BspDI	ATCGAT	1 cut(s)	2706
BspEI	TCCGGA	2 cut(s)	755, 1308
BspFNI	CGCG	2 cut(s)	308, 517
BspLI	GGNNCC	2 cut(s)	7, 606
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	2637
BspPI	GGATC	5 cut(s)	13, 511, 570, 1728, 2168
BspQI	GCTCTTC	2 cut(s)	2368, 2639
BspTI	CTTAAG	1 cut(s)	2393
BspTNI	GGTCTC	2 cut(s)	1247, 1900
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	3 cut(s)	430, 1344, 2013
BssECI	CCNNGG	5 cut(s)	471, 1122, 1384, 1830, 2612
BssMI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
BssT1I	CCWWGG	1 cut(s)	2612
Bst2UI	CCWGG	2 cut(s)	1124, 1773
Bst4CI	ACNGT	7 cut(s)	292, 643, 1049, 1291, 1487, 1882, 1930
Bst6I	CTCTTC	7 cut(s)	8, 582, 738, 2368, 2544, 2568, 2639
BstAFI	CTTAAG	1 cut(s)	2393
BstC8I	GCNNGC	5 cut(s)	119, 491, 619, 675, 1281
BstDEI	CTNAG	6 cut(s)	138, 368, 634, 654, 858, 2043
BstDSI	CCRYGG	1 cut(s)	471
BstEII	GGTNACC	1 cut(s)	1126
BstF5I	GGATG	3 cut(s)	415, 769, 1939
BstFNI	CGCG	2 cut(s)	308, 517
BstHHI	GCGC	2 cut(s)	1530, 2361
BstKTI	GATC	9 cut(s)	8, 506, 565, 1591, 1723, 2089, 2176, 2337, 2896
BstMAI	GTCTC	3 cut(s)	1247, 1900, 2931
BstMBI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
BstMWI	GCNNNNNNNGC	9 cut(s)	163, 305, 331, 490, 830, 851, 1592, 2638, 2753
BstNI	CCWGG	2 cut(s)	1124, 1773
BstNSI	RCATGY	3 cut(s)	493, 1279, 1513
BstPI	GGTNACC	1 cut(s)	1126
BstSCI	CCNGG	3 cut(s)	1122, 1383, 1771
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	2 cut(s)	123, 648
BstUI	CGCG	2 cut(s)	308, 517
BstV1I	GCAGC	7 cut(s)	53, 56, 841, 2339, 2734, 2882, 2963
BstV2I	GAAGAC	3 cut(s)	619, 1896, 2190
BstX2I	RGATCY	4 cut(s)	5, 562, 1720, 2173
BstYI	RGATCY	4 cut(s)	5, 562, 1720, 2173
Bsu15I	ATCGAT	1 cut(s)	2706
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	3 cut(s)	724, 908, 2731
BsuTUI	ATCGAT	1 cut(s)	2706
BtgI	CCRYGG	1 cut(s)	471
BtgZI	GCGATG	1 cut(s)	2454
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	415, 769, 1939
BtsIMutI	CAGTG	5 cut(s)	1054, 1351, 1492, 1935, 2117
BveI	ACCTGC	1 cut(s)	2637
Cac8I	GCNNGC	5 cut(s)	119, 491, 619, 675, 1281
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	2 cut(s)	1530, 2361
Cfr13I	GGNCC	3 cut(s)	723, 1033, 1834
ClaI	ATCGAT	1 cut(s)	2706
CseI	GACGC	4 cut(s)	288, 523, 860, 944
CsiI	ACCWGGT	1 cut(s)	1771
Csp6I	GTAC	8 cut(s)	133, 304, 382, 496, 772, 1694, 1750, 2209
CviQI	GTAC	8 cut(s)	133, 304, 382, 496, 772, 1694, 1750, 2209
DdeI	CTNAG	6 cut(s)	138, 368, 634, 654, 858, 2043
DpnI	GATC	9 cut(s)	7, 505, 564, 1590, 1722, 2088, 2175, 2336, 2895
DpnII	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
DraI	TTTAAA	2 cut(s)	1713, 2383
DraIII	CACNNNGTG	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	1947
Eam1104I	CTCTTC	7 cut(s)	8, 582, 738, 2368, 2544, 2568, 2639
Eam1105I	GACNNNNNGTC	1 cut(s)	1947
EarI	CTCTTC	7 cut(s)	8, 582, 738, 2368, 2544, 2568, 2639
EciI	GGCGGA	2 cut(s)	144, 499
Ecl136II	GAGCTC	1 cut(s)	2512
Eco130I	CCWWGG	1 cut(s)	2612
Eco24I	GRGCYC	1 cut(s)	2514
Eco31I	GGTCTC	2 cut(s)	1247, 1900
Eco32I	GATATC	1 cut(s)	925
Eco47I	GGWCC	2 cut(s)	1033, 1834
Eco53kI	GAGCTC	1 cut(s)	2512
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	2106
Eco91I	GGTNACC	1 cut(s)	1126
EcoICRI	GAGCTC	1 cut(s)	2512
EcoO65I	GGTNACC	1 cut(s)	1126
EcoRII	CCWGG	2 cut(s)	1122, 1771
EcoRV	GATATC	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	2612
EcoT22I	ATGCAT	2 cut(s)	239, 1412
EcoT38I	GRGCYC	1 cut(s)	2514
ErhI	CCWWGG	1 cut(s)	2612
FalI	AAGNNNNNCTT	6 cut(s)	1739, 1771, 2376, 2408, 2664, 2696
FaqI	GGGAC	1 cut(s)	1058
FauI	CCCGC	2 cut(s)	190, 2577
FauNDI	CATATG	1 cut(s)	2752
FblI	GTMKAC	1 cut(s)	2062
FokI	GGATG	3 cut(s)	422, 776, 1946
FriOI	GRGCYC	1 cut(s)	2514
FspBI	CTAG	5 cut(s)	1433, 1691, 1944, 2423, 2436
GlaI	GCGC	2 cut(s)	1529, 2360
GsuI	CTGGAG	3 cut(s)	447, 1099, 1628
HaeIII	GGCC	3 cut(s)	724, 908, 2731
HapII	CCGG	3 cut(s)	756, 1309, 1384
HgaI	GACGC	4 cut(s)	288, 523, 860, 944
HhaI	GCGC	2 cut(s)	1530, 2361
Hin6I	GCGC	2 cut(s)	1528, 2359
HinP1I	GCGC	2 cut(s)	1528, 2359
HincII	GTYRAC	3 cut(s)	97, 2063, 2499
HindII	GTYRAC	3 cut(s)	97, 2063, 2499
HindIII	AAGCTT	1 cut(s)	1809
HpaII	CCGG	3 cut(s)	756, 1309, 1384
HphI	GGTGA	5 cut(s)	475, 523, 949, 1361, 2268
Hpy166II	GTNNAC	4 cut(s)	97, 121, 2063, 2499
Hpy8I	GTNNAC	4 cut(s)	97, 121, 2063, 2499
Hpy99I	CGWCG	4 cut(s)	128, 304, 854, 1109
HpyAV	CCTTC	7 cut(s)	177, 208, 859, 880, 1217, 1267, 2452
HpyCH4III	ACNGT	7 cut(s)	292, 643, 1049, 1291, 1487, 1882, 1930
HpyCH4IV	ACGT	5 cut(s)	126, 147, 337, 1399, 2407
HpyF10VI	GCNNNNNNNGC	9 cut(s)	163, 305, 331, 490, 830, 851, 1592, 2638, 2753
HpyF3I	CTNAG	6 cut(s)	138, 368, 634, 654, 858, 2043
HpySE526I	ACGT	5 cut(s)	126, 147, 337, 1399, 2407
HspAI	GCGC	2 cut(s)	1528, 2359
Kpn2I	TCCGGA	2 cut(s)	755, 1308
Kzo9I	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
LguI	GCTCTTC	2 cut(s)	2368, 2639
LmnI	GCTCC	5 cut(s)	52, 486, 610, 844, 1624
Lsp1109I	GCAGC	7 cut(s)	53, 56, 841, 2339, 2734, 2882, 2963
LweI	GCATC	4 cut(s)	1177, 1446, 1885, 2590
MabI	ACCWGGT	1 cut(s)	1771
MaeI	CTAG	5 cut(s)	1433, 1691, 1944, 2423, 2436
MaeII	ACGT	5 cut(s)	126, 147, 337, 1399, 2407
MalI	GATC	9 cut(s)	7, 505, 564, 1590, 1722, 2088, 2175, 2336, 2895
MboI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
MfeI	CAATTG	1 cut(s)	1523
MflI	RGATCY	4 cut(s)	5, 562, 1720, 2173
MhlI	GDGCHC	3 cut(s)	123, 648, 2514
MlyI	GAGTC	3 cut(s)	29, 260, 2068
MmeI	TCCRAC	3 cut(s)	48, 873, 1011
Mph1103I	ATGCAT	2 cut(s)	239, 1412
MroI	TCCGGA	2 cut(s)	755, 1308
MroXI	GAANNNNTTC	1 cut(s)	2850
MslI	CAYNNNNRTG	2 cut(s)	599, 1415
MspA1I	CMGCKG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	2393
MspI	CCGG	3 cut(s)	756, 1309, 1384
MspR9I	CCNGG	3 cut(s)	1124, 1385, 1773
MunI	CAATTG	1 cut(s)	1523
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	1124, 1773
MvnI	CGCG	2 cut(s)	308, 517
MwoI	GCNNNNNNNGC	9 cut(s)	163, 305, 331, 490, 830, 851, 1592, 2638, 2753
NciI	CCSGG	1 cut(s)	1385
NdeI	CATATG	1 cut(s)	2752
NdeII	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
NlaIV	GGNNCC	2 cut(s)	7, 606
NmuCI	GTSAC	3 cut(s)	511, 1840, 2274
NsiI	ATGCAT	2 cut(s)	239, 1412
NspI	RCATGY	3 cut(s)	493, 1279, 1513
PaeI	GCATGC	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	2106
PciSI	GCTCTTC	2 cut(s)	2368, 2639
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	2850
PfeI	GAWTC	7 cut(s)	1183, 1519, 1643, 1916, 2161, 2194, 2900
Pfl23II	CGTACG	1 cut(s)	303
PflFI	GACNNNGTC	3 cut(s)	968, 1838, 2942
PflMI	CCANNNNNTGG	1 cut(s)	1077
PleI	GAGTC	3 cut(s)	29, 259, 2067
PpsI	GAGTC	3 cut(s)	29, 259, 2067
PshBI	ATTAAT	1 cut(s)	2049
PsiI	TTATAA	1 cut(s)	1652
Psp124BI	GAGCTC	1 cut(s)	2514
Psp6I	CCWGG	2 cut(s)	1122, 1771
PspEI	GGTNACC	1 cut(s)	1126
PspGI	CCWGG	2 cut(s)	1122, 1771
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	7, 606
PspPI	GGNCC	3 cut(s)	723, 1033, 1834
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PstI	CTGCAG	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	4 cut(s)	5, 562, 1720, 2173
PsyI	GACNNNGTC	3 cut(s)	968, 1838, 2942
RsaI	GTAC	8 cut(s)	134, 305, 383, 497, 773, 1695, 1751, 2210
RsaNI	GTAC	8 cut(s)	133, 304, 382, 496, 772, 1694, 1750, 2209
RseI	CAYNNNNRTG	2 cut(s)	599, 1415
SacI	GAGCTC	1 cut(s)	2514
SalI	GTCGAC	1 cut(s)	2061
SapI	GCTCTTC	2 cut(s)	2368, 2639
Sau3AI	GATC	9 cut(s)	5, 503, 562, 1588, 1720, 2086, 2173, 2334, 2893
Sau96I	GGNCC	3 cut(s)	723, 1033, 1834
ScaI	AGTACT	1 cut(s)	1751
SchI	GAGTC	3 cut(s)	29, 260, 2068
ScrFI	CCNGG	3 cut(s)	1124, 1385, 1773
SduI	GDGCHC	3 cut(s)	123, 648, 2514
SexAI	ACCWGGT	1 cut(s)	1771
SfaNI	GCATC	4 cut(s)	1177, 1446, 1885, 2590
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	2106
SinI	GGWCC	2 cut(s)	1033, 1834
SlaI	CTCGAG	1 cut(s)	2106
SmiMI	CAYNNNNRTG	2 cut(s)	599, 1415
SmlI	CTYRAG	6 cut(s)	566, 1628, 2106, 2297, 2393, 2681
SmoI	CTYRAG	6 cut(s)	566, 1628, 2106, 2297, 2393, 2681
SphI	GCATGC	1 cut(s)	493
SspMI	CTAG	5 cut(s)	1433, 1691, 1944, 2423, 2436
SstI	GAGCTC	1 cut(s)	2514
StyD4I	CCNGG	3 cut(s)	1122, 1383, 1771
StyI	CCWWGG	1 cut(s)	2612
TaaI	ACNGT	7 cut(s)	292, 643, 1049, 1291, 1487, 1882, 1930
TaiI	ACGT	5 cut(s)	129, 150, 340, 1402, 2410
TaqI	TCGA	9 cut(s)	207, 441, 688, 2030, 2062, 2107, 2366, 2706, 2808
TatI	WGTACW	5 cut(s)	381, 495, 771, 1693, 1749
TauI	GCSGC	4 cut(s)	160, 163, 166, 911
TfiI	GAWTC	7 cut(s)	1183, 1519, 1643, 1916, 2161, 2194, 2900
TscAI	CASTG	5 cut(s)	1054, 1351, 1492, 1935, 2124
TseFI	GTSAC	3 cut(s)	511, 1840, 2274
TseI	GCWGC	7 cut(s)	41, 44, 854, 2327, 2747, 2870, 2951
Tsp45I	GTSAC	3 cut(s)	511, 1840, 2274
TspGWI	ACGGA	3 cut(s)	244, 488, 728
TspRI	CASTG	5 cut(s)	1054, 1351, 1492, 1935, 2124
Tth111I	GACNNNGTC	3 cut(s)	968, 1838, 2942
Van91I	CCANNNNNTGG	1 cut(s)	1077
Vha464I	CTTAAG	1 cut(s)	2393
VneI	GTGCAC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	1033, 1834
VspI	ATTAAT	1 cut(s)	2049
XapI	RAATTY	6 cut(s)	191, 659, 1313, 1552, 2774, 2906
XceI	RCATGY	3 cut(s)	493, 1279, 1513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1603
XhoI	CTCGAG	1 cut(s)	2106
XmiI	GTMKAC	1 cut(s)	2062
XmnI	GAANNNNTTC	1 cut(s)	2850
XspI	CTAG	5 cut(s)	1433, 1691, 1944, 2423, 2436
ZrmI	AGTACT	1 cut(s)	1751
Zsp2I	ATGCAT	2 cut(s)	239, 1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.