Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001426.1

Orthogroup ID

OG0008191

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 729

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001426.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

gctcgtccactccttattaaagccctcgaatcaggtgacttgagcgaactagtagatcctaggcttgagaagcattatgtggagggagaaatgttaagaatggttgaggcagcagctgcatgcgtgcgtcattctgctacaaaacgaccacggatggcacaggtctgtagagcattggactgtgaaggtgatgatctctcgaatggggtgaaatttgggcagagtaccgcttatgactctggccagtacaacgaagacattatgagattcaggaggatggcattaggcaccggcagctcagagtttgaagcgtctagtgcagaattcaccggttccagagagctatcagggcctcaaactccatggactacgactcgcccagatgtttcaagcgacgaatcagaaactcgagcatttaacaaccagggtaatgccagcaagaaccaacgcaacaccagtgtccggcggtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

157

Amino Acids

17.42

Weight (kDa)

5.78

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10620 AT1G23540 AT1G23540 AT1G70450 AT1G70460
fragaria_vesca	FvH4_4g34330
malus_domestica	MD13G1092900.v1.1 MD16G1093800.v1.1
prunus_persica	Prupe.1G252700_v2.0.a1 Prupe.1G252700_v2.0.a1 Prupe.1G252700_v2.0.a1
pyrus_communis	pycom13g08090
rosa_chinensis	RchiOBHm_Chr4g0443751
rosa_laevigata	RLG00000005893
rosa_multiflora	Rmu_co8490185.1_g000001 Rmu_sc0001426.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384320
rosa_rugosa	Rorug04G0347100
rosa_samantha	Rh4AG407200 Rh4BG418100 Rh4CG432300 Rh4DG413400
rosa_wichuraiana	Rw4G034970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	2 cut(s)	228, 466
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	212, 323
AfaI	GTAC	3 cut(s)	226, 248, 470
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	308, 390
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	116, 297, 343
AluI	AGCT	3 cut(s)	116, 297, 343
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	2 cut(s)	241, 350
ApeKI	GCWGC	4 cut(s)	110, 113, 116, 294
ApoI	RAATTY	2 cut(s)	212, 323
AsiGI	ACCGGT	1 cut(s)	329
AspA2I	CCTAGG	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	47, 200, 220, 319
AvaI	CYCGRG	1 cut(s)	408
AvrII	CCTAGG	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	103, 122, 125, 306
BccI	CCATC	2 cut(s)	148, 271
BciT130I	CCWGG	1 cut(s)	425
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	3 cut(s)	50, 60, 315
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	4 cut(s)	111, 114, 117, 295
BlnI	CCTAGG	1 cut(s)	59
BlsI	GCNGC	4 cut(s)	112, 115, 118, 296
Bme1390I	CCNGG	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	289, 334
BmrFI	CCNGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	61, 86
BsaJI	CCNNGG	4 cut(s)	59, 149, 362, 424
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	2 cut(s)	290, 329
Bse1I	ACTGG	2 cut(s)	244, 456
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	4 cut(s)	59, 149, 362, 424
BseGI	GGATG	2 cut(s)	159, 282
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	244, 456
BseXI	GCAGC	4 cut(s)	103, 122, 125, 306
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	243, 352
BshNI	GGYRCC	1 cut(s)	287
BshTI	ACCGGT	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	3 cut(s)	291, 330, 463
BslI	CCNNNNNNNGG	1 cut(s)	462
BsnI	GGCC	2 cut(s)	243, 352
BsoBI	CYCGRG	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	55, 193
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	2 cut(s)	228, 466
BspANI	GGCC	2 cut(s)	243, 352
BspCNI	CTCAG	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	289, 334
BspPI	GGATC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	287
BsrFI	RCCGGY	2 cut(s)	290, 329
BsrI	ACTGG	2 cut(s)	244, 456
BssAI	RCCGGY	2 cut(s)	290, 329
BssECI	CCNNGG	4 cut(s)	59, 149, 362, 424
BssMI	GATC	2 cut(s)	55, 193
BssT1I	CCWWGG	2 cut(s)	59, 362
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	121, 125, 436
BstDEI	CTNAG	1 cut(s)	298
BstDSI	CCRYGG	2 cut(s)	149, 362
BstF5I	GGATG	2 cut(s)	159, 282
BstKTI	GATC	2 cut(s)	58, 196
BstMBI	GATC	2 cut(s)	55, 193
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 116, 294, 317, 349
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	103, 122, 125, 306
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	243, 352
BtgI	CCRYGG	2 cut(s)	149, 362
BtsCI	GGATG	2 cut(s)	159, 282
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	3 cut(s)	121, 125, 436
CaiI	CAGNNNCTG	1 cut(s)	116
Cfr10I	RCCGGY	2 cut(s)	290, 329
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	2 cut(s)	116, 300
Csp6I	GTAC	3 cut(s)	225, 247, 469
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	2 cut(s)	120, 363
CviJI	RGCY	7 cut(s)	23, 64, 116, 243, 297, 343, 352
CviKI_1	RGCY	7 cut(s)	23, 64, 116, 243, 297, 343, 352
CviQI	GTAC	3 cut(s)	225, 247, 469
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	2 cut(s)	57, 195
DpnII	GATC	2 cut(s)	55, 193
EaeI	YGGCCR	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	59, 362
Eco88I	CYCGRG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	59, 362
ErhI	CCWWGG	2 cut(s)	59, 362
FaeI	CATG	2 cut(s)	123, 366
FaiI	YATR	5 cut(s)	78, 121, 234, 263, 364
FatI	CATG	2 cut(s)	119, 362
Fnu4HI	GCNGC	4 cut(s)	111, 114, 117, 295
FokI	GGATG	2 cut(s)	166, 289
Fsp4HI	GCNGC	4 cut(s)	111, 114, 117, 295
FspBI	CTAG	3 cut(s)	50, 60, 315
GluI	GCNGC	4 cut(s)	111, 114, 117, 295
HaeIII	GGCC	2 cut(s)	243, 352
HapII	CCGG	3 cut(s)	291, 330, 463
HgaI	GACGC	2 cut(s)	116, 300
Hin1II	CATG	2 cut(s)	123, 366
HinfI	GANTC	5 cut(s)	29, 236, 267, 373, 398
HpaII	CCGG	3 cut(s)	291, 330, 463
HphI	GGTGA	4 cut(s)	47, 200, 220, 319
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	301, 403
Hpy188III	TCNNGA	3 cut(s)	199, 271, 336
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	119, 320
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 116, 294, 317, 349
HpyF3I	CTNAG	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	123, 366
Kzo9I	GATC	2 cut(s)	55, 193
Lsp1109I	GCAGC	4 cut(s)	103, 122, 125, 306
MaeI	CTAG	3 cut(s)	50, 60, 315
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	57, 195
MboI	GATC	2 cut(s)	55, 193
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	212, 323
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	230, 367
MnlI	CCTC	5 cut(s)	35, 76, 100, 267, 363
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	3 cut(s)	18, 95, 417
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	291, 330, 463
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	5 cut(s)	70, 116, 294, 317, 349
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	2 cut(s)	55, 193
NlaIII	CATG	2 cut(s)	123, 366
NlaIV	GGNNCC	2 cut(s)	289, 334
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	29, 267, 398
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	112, 115, 118, 296
PleI	GAGTC	2 cut(s)	230, 367
PpsI	GAGTC	2 cut(s)	230, 367
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	289, 334
PspPI	GGNCC	1 cut(s)	350
PspXI	VCTCGAGB	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	3 cut(s)	226, 248, 470
RsaNI	GTAC	3 cut(s)	225, 247, 469
SaqAI	TTAA	3 cut(s)	18, 95, 417
SatI	GCNGC	4 cut(s)	111, 114, 117, 295
Sau3AI	GATC	2 cut(s)	55, 193
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	230, 367
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	6 cut(s)	37, 118, 165, 190, 299, 345
SfcI	CTRYAG	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	408
SlaI	CTCGAG	1 cut(s)	408
SmlI	CTYRAG	3 cut(s)	40, 65, 408
SmoI	CTYRAG	3 cut(s)	40, 65, 408
SpeI	ACTAGT	1 cut(s)	49
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	212, 323
SsiI	CCGC	2 cut(s)	228, 466
SspMI	CTAG	3 cut(s)	50, 60, 315
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	2 cut(s)	59, 362
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	27, 200, 409
TasI	AATT	2 cut(s)	212, 323
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	29, 267, 398
Tru1I	TTAA	3 cut(s)	18, 95, 417
Tru9I	TTAA	3 cut(s)	18, 95, 417
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	110, 113, 116, 294
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	463
XapI	RAATTY	2 cut(s)	212, 323
XceI	RCATGY	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	408
XmaJI	CCTAGG	1 cut(s)	59
XspI	CTAG	3 cut(s)	50, 60, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.