Rmu_sc0001493.1_g000016

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001493.1
OG0017041
Physical Location & Seq
Reverse (-)
72944 .. 74234
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
atgttagcgcatttatggccgtgcgcgtatcttgattcttatgagagtattagagaacagcccaattctcattgtcgcggcctcacgaacaactctcacttagaaatattgcacaagtctcctcctaagctctctgtgttgtcccaatctgtggatattcgcaaaagggtcgtgccccctttgtcggatgactctatagggaaccttgtgggatactttgctgcacaggcaaatgagagtgagttggagctgccaggcttggttgctcaactaaggaaagggctcaaagagtcgagcaactattgtgccgaaagacttaaagggagtgatggatctcgggtgattatagaatctttcaaagagtcagatgatttcatccatagagatgacattatgaactttcatgtctgcacaggtttgagtgattataaggtattgtatgaggtgaattttgggtggggaaggccaatttgggtgagtaatattcctagtggtttaaacagaaatgtagcatcattggtgagcacaagagaggatgatggaacagaggcttgggtgactttgagtgagggagacatggcgacttttgaacagaaccaggagcttcttgcatttgctgtggtgaatccaagtgtcttggaacccattgcattgaagtctgctctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

222

Amino Acids

24.68

Weight (kDa)

5.05

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 38 - 202 3.2e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26040
fragaria_vesca FvH4_3g15920
malus_domestica MD05G1218200.v1.1 MD16G1109400.v1.1
rosa_chinensis RchiOBHm_Chr5g0026761
rosa_laevigata RLG00000032959
rosa_multiflora Rmu_sc0001493.1_g000016 Rmu_ssc0000172.1_g000028 Rmu_ssc0000172.1_g000030
rosa_roxburghii Rroxscaffold_1G00052730
rosa_rugosa Rorug05G0095400
rosa_samantha Rh5DG187500
rosa_wichuraiana Rw5G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB7I CCANNNNNTGG 1 cut(s) 151
AccII CGCG 2 cut(s) 26, 78
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 151, 184
AgsI TTSAA 3 cut(s) 358, 590, 655
AjnI CCWGG 2 cut(s) 253, 597
AjuI GAANNNNNNNTTGG 4 cut(s) 454, 486, 535, 567
AluBI AGCT 3 cut(s) 130, 250, 604
AluI AGCT 3 cut(s) 130, 250, 604
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 2 cut(s) 123, 567
AlwI GGATC 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 3 cut(s) 17, 79, 464
ApeKI GCWGC 2 cut(s) 221, 250
ApoI RAATTY 1 cut(s) 448
AspLEI GCGC 2 cut(s) 10, 26
AsuHPI GGTGA 6 cut(s) 352, 457, 487, 532, 568, 634
AvaI CYCGRG 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 208, 237
BccI CCATC 2 cut(s) 323, 533
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 2 cut(s) 255, 599
BciVI GTATCC 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 123, 567
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 3 cut(s) 79, 222, 251
BlsI GCNGC 3 cut(s) 80, 223, 252
Bme1390I CCNGG 2 cut(s) 255, 599
BmeT110I CYCGRG 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 203, 642
BmrFI CCNGG 2 cut(s) 255, 599
BmsI GCATC 1 cut(s) 521
Bpu10I CCTNAGC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 184
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 2 cut(s) 255, 599
BseGI GGATG 3 cut(s) 193, 375, 541
BseLI CCNNNNNNNGG 2 cut(s) 151, 184
BseMI GCAATG 1 cut(s) 645
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 2 cut(s) 208, 237
BsgI GTGCAG 2 cut(s) 207, 394
Bsh1236I CGCG 2 cut(s) 26, 78
BshFI GGCC 3 cut(s) 19, 81, 466
BsiHKAI GWGCWC 1 cut(s) 527
BsiHKCI CYCGRG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 151, 184
BsmAI GTCTC 2 cut(s) 123, 567
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 3 cut(s) 19, 81, 466
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 177, 285, 527
Bsp143I GATC 1 cut(s) 332
BspACI CCGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 19, 81, 466
BspFNI CGCG 2 cut(s) 26, 78
BspLI GGNNCC 2 cut(s) 203, 642
BspPI GGATC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 645
BssMI GATC 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 255, 599
BstDEI CTNAG 3 cut(s) 100, 126, 272
BstF5I GGATG 3 cut(s) 193, 375, 541
BstFNI CGCG 2 cut(s) 26, 78
BstHHI GCGC 2 cut(s) 10, 26
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 2 cut(s) 123, 567
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 16, 227
BstNI CCWGG 2 cut(s) 255, 599
BstSCI CCNGG 2 cut(s) 253, 597
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 2 cut(s) 26, 78
BstV1I GCAGC 2 cut(s) 208, 237
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 3 cut(s) 19, 81, 466
BtsCI GGATG 3 cut(s) 193, 375, 541
CfoI GCGC 2 cut(s) 10, 26
CviAII CATG 2 cut(s) 404, 577
DdeI CTNAG 3 cut(s) 100, 126, 272
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraI TTTAAA 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 253, 597
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 2 cut(s) 407, 580
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 403, 576
Fnu4HI GCNGC 3 cut(s) 79, 222, 251
FokI GGATG 3 cut(s) 200, 362, 548
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 3 cut(s) 79, 222, 251
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 9, 25
GluI GCNGC 3 cut(s) 79, 222, 251
HaeIII GGCC 3 cut(s) 19, 81, 466
HhaI GCGC 2 cut(s) 10, 26
Hin1II CATG 2 cut(s) 407, 580
Hin6I GCGC 2 cut(s) 8, 24
HinP1I GCGC 2 cut(s) 8, 24
HinfI GANTC 6 cut(s) 35, 191, 290, 350, 362, 625
HphI GGTGA 6 cut(s) 352, 457, 487, 532, 568, 634
Hpy188I TCNGA 2 cut(s) 187, 367
Hpy188III TCNNGA 2 cut(s) 32, 85
HpyAV CCTTC 1 cut(s) 456
HpyCH4V TGCA 5 cut(s) 112, 224, 411, 611, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 227
HpyF3I CTNAG 3 cut(s) 100, 126, 272
Hsp92II CATG 2 cut(s) 407, 580
HspAI GCGC 2 cut(s) 8, 24
Kzo9I GATC 1 cut(s) 332
LmnI GCTCC 2 cut(s) 247, 601
LpnPI CCDG 6 cut(s) 212, 240, 267, 399, 584, 611
Lsp1109I GCAGC 2 cut(s) 208, 237
LweI GCATC 1 cut(s) 521
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 556
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 3 cut(s) 177, 285, 527
MluCI AATT 3 cut(s) 64, 448, 468
MlyI GAGTC 3 cut(s) 185, 299, 371
MmeI TCCRAC 2 cut(s) 165, 225
MnlI CCTC 6 cut(s) 92, 132, 436, 526, 541, 562
MseI TTAA 2 cut(s) 318, 497
MslI CAYNNNNRTG 1 cut(s) 384
MspR9I CCNGG 2 cut(s) 255, 599
MssI GTTTAAAC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 255, 599
MvnI CGCG 2 cut(s) 26, 78
MwoI GCNNNNNNNGC 2 cut(s) 16, 227
NdeII GATC 1 cut(s) 332
NlaIII CATG 2 cut(s) 407, 580
NlaIV GGNNCC 2 cut(s) 203, 642
NmuCI GTSAC 1 cut(s) 556
PfeI GAWTC 3 cut(s) 35, 350, 625
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 3 cut(s) 80, 223, 252
PleI GAGTC 3 cut(s) 185, 298, 370
PmeI GTTTAAAC 1 cut(s) 498
PpsI GAGTC 3 cut(s) 185, 298, 370
PsiI TTATAA 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 253, 597
PspGI CCWGG 2 cut(s) 253, 597
PspN4I GGNNCC 2 cut(s) 203, 642
PsuI RGATCY 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 2 cut(s) 318, 497
SatI GCNGC 3 cut(s) 79, 222, 251
Sau3AI GATC 1 cut(s) 332
SchI GAGTC 3 cut(s) 185, 299, 371
ScrFI CCNGG 2 cut(s) 255, 599
SduI GDGCHC 3 cut(s) 177, 285, 527
SetI ASST 7 cut(s) 132, 207, 252, 418, 435, 447, 606
SfaNI GCATC 1 cut(s) 521
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 3 cut(s) 64, 448, 468
SsiI CCGC 1 cut(s) 78
SspI AATATT 2 cut(s) 108, 484
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 253, 597
TaqI TCGA 1 cut(s) 293
TasI AATT 3 cut(s) 64, 448, 468
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 3 cut(s) 35, 350, 625
Tru1I TTAA 2 cut(s) 318, 497
Tru9I TTAA 2 cut(s) 318, 497
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 2 cut(s) 221, 250
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 364, 392, 410
Van91I CCANNNNNTGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 448
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.