Rmu_sc0001557.1_g000014

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001557.1
OG0015955
Physical Location & Seq
Reverse (-)
51889 .. 52407
519 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atggcggaccgtcaccagcaaccccaccaggcccaggcccagaaccagaaccaccagcaacaccgattatcagcccaaaccagaccctcccacacctcgttcctaagtaaactccaaggccacgtcccaaattccactcaactcatcggactactcaccctcctcgtctccggcggtattctcctactcctgacaggaatcacaatcaccgttacggttctgggactcatcttcttcactccaatcctcatagtttccagcccgatatgggtcccactcgggacggtgctgttcctgaccgcggccgggttcgtgtccatgtgcgggttcggggccgccgtcgtgggcgggttgtcgtggatgtacaggtacttcaaggggatgcacccgcccggttcggaccgggttgattatgctcggagcaggatttacgacacggctagccacgtcaaggactatgctaaagagtacggtgggtatttgcatggtaaggtcaaggatgcagctccgggagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

172

Amino Acids

18.67

Weight (kDa)

9.67

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 46 - 158 1.7e-45 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48990 AT3G18570
fragaria_vesca FvH4_5g12770
malus_domestica MD06G1210400.v1.1 MD14G1221100.v1.1 MD17G1068400.v1.1
prunus_persica Prupe.5G216500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184461
rosa_laevigata RLG00000004973
rosa_multiflora Rmu_sc0001557.1_g000014
rosa_roxburghii Rroxscaffold_3G00269590
rosa_samantha Rh7BG067500 Rh7CG067800 Rh7DG067500
rosa_wichuraiana Rw7G005560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 302
AciI CCGC 8 cut(s) 5, 174, 300, 302, 324, 336, 348, 389
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 3 cut(s) 365, 371, 470
AfiI CCNNNNNNNGG 6 cut(s) 34, 268, 301, 306, 324, 451
AgsI TTSAA 1 cut(s) 376
AjiI CACGTC 2 cut(s) 124, 448
AjnI CCWGG 2 cut(s) 27, 33
AluBI AGCT 2 cut(s) 506, 515
AluI AGCT 2 cut(s) 506, 515
Alw26I GTCTC 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 5 cut(s) 30, 36, 118, 303, 333
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 6 cut(s) 7, 31, 37, 271, 333, 400
AsuC2I CCSGG 4 cut(s) 307, 393, 404, 510
AsuHPI GGTGA 3 cut(s) 5, 148, 199
AsuNHI GCTAGC 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 7, 271, 400
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BbvI GCAGC 1 cut(s) 515
BceAI ACGGC 2 cut(s) 323, 453
BciT130I CCWGG 2 cut(s) 29, 35
BcnI CCSGG 4 cut(s) 307, 393, 404, 510
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 441
BisI GCNGC 3 cut(s) 303, 336, 504
BlsI GCNGC 3 cut(s) 304, 337, 505
Bme1390I CCNGG 6 cut(s) 29, 35, 307, 393, 404, 510
Bme18I GGWCC 3 cut(s) 7, 271, 400
BmeT110I CYCGRG 1 cut(s) 278
BmgBI CACGTC 2 cut(s) 124, 448
BmgT120I GGNCC 6 cut(s) 7, 31, 37, 271, 333, 400
BmiI GGNNCC 3 cut(s) 272, 273, 334
BmrFI CCNGG 6 cut(s) 29, 35, 307, 393, 404, 510
BmsI GCATC 2 cut(s) 372, 490
BmtI GCTAGC 1 cut(s) 444
BpuMI CCSGG 4 cut(s) 307, 393, 404, 510
BsaJI CCNNGG 3 cut(s) 33, 115, 300
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 268, 301, 306, 324, 451
BseBI CCWGG 2 cut(s) 29, 35
BseDI CCNNGG 3 cut(s) 33, 115, 300
BseGI GGATG 3 cut(s) 366, 387, 505
BseLI CCNNNNNNNGG 6 cut(s) 34, 268, 301, 306, 324, 451
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 5 cut(s) 32, 38, 120, 305, 335
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 5 cut(s) 171, 306, 393, 403, 509
BslFI GGGAC 4 cut(s) 110, 237, 257, 295
BslI CCNNNNNNNGG 6 cut(s) 34, 268, 301, 306, 324, 451
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 4 cut(s) 110, 237, 257, 295
BsnI GGCC 5 cut(s) 32, 38, 120, 305, 335
BsoBI CYCGRG 1 cut(s) 278
Bsp1407I TGTACA 1 cut(s) 363
BspACI CCGC 8 cut(s) 5, 174, 300, 302, 324, 336, 348, 389
BspANI GGCC 5 cut(s) 32, 38, 120, 305, 335
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 3 cut(s) 272, 273, 334
BspOI GCTAGC 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 363
BssECI CCNNGG 3 cut(s) 33, 115, 300
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 29, 35
Bst4CI ACNGT 5 cut(s) 11, 211, 217, 286, 473
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 104, 516
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 366, 387, 505
BstFNI CGCG 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 2 cut(s) 29, 35
BstSCI CCNGG 6 cut(s) 27, 33, 305, 391, 402, 508
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 515
BstZI CGGCCG 1 cut(s) 303
BsuRI GGCC 5 cut(s) 32, 38, 120, 305, 335
BtgI CCRYGG 1 cut(s) 300
BtrI CACGTC 2 cut(s) 124, 448
BtsCI GGATG 3 cut(s) 366, 387, 505
Cac8I GCNNGC 1 cut(s) 442
Cfr13I GGNCC 6 cut(s) 7, 31, 37, 271, 333, 400
Cfr42I CCGCGG 1 cut(s) 303
CpoI CGGWCCG 2 cut(s) 7, 400
Csp6I GTAC 3 cut(s) 364, 370, 469
CspI CGGWCCG 2 cut(s) 7, 400
CviAII CATG 2 cut(s) 319, 485
CviQI GTAC 3 cut(s) 364, 370, 469
DdeI CTNAG 2 cut(s) 104, 516
EaeI YGGCCR 1 cut(s) 303
EagI CGGCCG 1 cut(s) 303
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 115
Eco47I GGWCC 3 cut(s) 7, 271, 400
Eco52I CGGCCG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 27, 33
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 322, 488
FaiI YATR 6 cut(s) 251, 268, 320, 414, 459, 486
FaqI GGGAC 4 cut(s) 110, 237, 257, 295
FatI CATG 2 cut(s) 318, 484
FauI CCCGC 3 cut(s) 317, 341, 396
Fnu4HI GCNGC 3 cut(s) 303, 336, 504
FokI GGATG 3 cut(s) 373, 394, 512
Fsp4HI GCNGC 3 cut(s) 303, 336, 504
FspBI CTAG 1 cut(s) 441
GluI GCNGC 3 cut(s) 303, 336, 504
HaeIII GGCC 5 cut(s) 32, 38, 120, 305, 335
HapII CCGG 5 cut(s) 171, 306, 393, 403, 509
Hin1II CATG 2 cut(s) 322, 488
HinfI GANTC 2 cut(s) 198, 225
HpaII CCGG 5 cut(s) 171, 306, 393, 403, 509
HphI GGTGA 3 cut(s) 5, 148, 199
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 149, 400, 420
Hpy188III TCNNGA 3 cut(s) 190, 280, 295
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 5 cut(s) 11, 211, 217, 286, 473
HpyCH4IV ACGT 2 cut(s) 123, 447
HpyCH4V TGCA 3 cut(s) 385, 484, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 2 cut(s) 104, 516
HpySE526I ACGT 2 cut(s) 123, 447
Hsp92II CATG 2 cut(s) 322, 488
KflI GGGWCCC 1 cut(s) 271
KspI CCGCGG 1 cut(s) 303
LmnI GCTCC 3 cut(s) 420, 511, 512
Lsp1109I GCAGC 1 cut(s) 515
LweI GCATC 2 cut(s) 372, 490
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 123, 447
MaeIII GTNAC 2 cut(s) 11, 211
MboII GAAGA 2 cut(s) 223, 226
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 5 cut(s) 97, 106, 170, 173, 257
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 5 cut(s) 171, 306, 393, 403, 509
MspR9I CCNGG 6 cut(s) 29, 35, 307, 393, 404, 510
MvaI CCWGG 2 cut(s) 29, 35
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 512
NciI CCSGG 4 cut(s) 307, 393, 404, 510
NheI GCTAGC 1 cut(s) 440
NlaIII CATG 2 cut(s) 322, 488
NlaIV GGNNCC 3 cut(s) 272, 273, 334
NmuCI GTSAC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 3 cut(s) 304, 337, 505
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 27, 33
PspGI CCWGG 2 cut(s) 27, 33
PspN4I GGNNCC 3 cut(s) 272, 273, 334
PspPI GGNCC 6 cut(s) 7, 31, 37, 271, 333, 400
PspPPI RGGWCCY 1 cut(s) 271
RsaI GTAC 3 cut(s) 365, 371, 470
RsaNI GTAC 3 cut(s) 364, 370, 469
Rsr2I CGGWCCG 2 cut(s) 7, 400
RsrII CGGWCCG 2 cut(s) 7, 400
SacII CCGCGG 1 cut(s) 303
SatI GCNGC 3 cut(s) 303, 336, 504
Sau96I GGNCC 6 cut(s) 7, 31, 37, 271, 333, 400
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 6 cut(s) 29, 35, 307, 393, 404, 510
SetI ASST 7 cut(s) 98, 126, 371, 450, 495, 508, 517
SfaNI GCATC 2 cut(s) 372, 490
Sfr303I CCGCGG 1 cut(s) 303
SgrBI CCGCGG 1 cut(s) 303
SinI GGWCC 3 cut(s) 7, 271, 400
Sse9I AATT 1 cut(s) 130
SsiI CCGC 8 cut(s) 5, 174, 300, 302, 324, 336, 348, 389
SspMI CTAG 1 cut(s) 441
StyD4I CCNGG 6 cut(s) 27, 33, 305, 391, 402, 508
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 5 cut(s) 11, 211, 217, 286, 473
TaiI ACGT 2 cut(s) 126, 450
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 363
TauI GCSGC 2 cut(s) 305, 338
TfiI GAWTC 1 cut(s) 198
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 11
VpaK11BI GGWCC 3 cut(s) 7, 271, 400
XapI RAATTY 1 cut(s) 130
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.