Rmu_sc0001579.1_g000005

UPF0505 protein C16orf62 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001579.1
OG0007890
Physical Location & Seq
Reverse (-)
30124 .. 43564
13441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2877 bp
atggtccaattttcgaagaaaacgacatccagtctaaaccgtaaagccgagcgtcgcagttccgtcttcccgagaggaaatacaagcggggacagacggacggtcctatcgatgctctccagctccatggagttcaggcctcgcaattacactgccgagaaacaagcccacgcgcttcctcgatcacgcgccgacgatcatcctctctccgctccattgtctctacctcaccccgaggttgaggttgttgatgatggggacaccgactatcttgacccgctcagaaggtcagataacaatgcagcagtttctatagaggatttggaaggcattgaagacagttctgcttcgggactctccagtgaagcttcgattcaaaatccatcaaaagaatgggtctcttttaagaggtcactgatgcagcggtttccggtctccaaaaccgttttgacttcttcaatgtccgatgtgatagtgaaaggcaggaaaacatttgacaaatcttcaacaaatatgcatttggaggaactggaagatccagaaaaatttgcagaagagggcggcaaagtcatcacaggacaggaatatgtttcccggttacacgagctcaaagctgaaataaatcacacttggcatgctgatgatcgtgtgacatctttgaaattatcaataaaagtagctaagcttttgatggatacatctattttacaatgttatcctacactttttgttcttgctacggatattatggatatgcttggggatatggtgtgggaacgcatcaagttgaaagctgaattagctgaagatggaaccaaactctgcttgttaccagagaacttcatggcgagtgatatttgctccgatgccaaagaaacttgcaataattggttcagcaaaattggtgcaatccgagagcttcttccacgtatttatttggagctcgcattattgccttgctggcgtttcttgcatgatcgacctctagactgtcttcagcgcttggtaatgatgacaagagggttagcagatccattggcatctgcctactgtcgcttgtatatggcccattgttttagaaagttacactctcatgatataggatgtctgctcaccggcgttcatgacttcaaaattttgttgatgcgggtgatatcggcaaaggaaacatttcacagaaacttgactgaaaacaaaagattgcttatcagtctaatggaaccaaccattgattatatcatgaaatgcatatttaaaaatgtgtccgaggtaaatgatgtactagtggagcttgggcttggatctaatcaagtggagctgcgtggaaggttcccatgcgcctcaattatccttcatcatctagtcaagcaacttccctcgcaagtagttagctcaagtgctatggagatcattcagctcattgagtccagcaatgatgattcctatgatcagtgcttgaattacaggttacttggatttaggctgtgtgaaagaaaatctgaaatgggcactgtcaatgctgtggtggacaaaatcattcaggttattactcaatatgaaggccttgatgagtacttgaaggttgtggatgcttatgtggacattttccttcaaaatcatatggatgaccacctgaactccattttggaaggtatttcaaaccgagcatgcagtcaagggattgctgaagatgaactgacgaccttgcagtctatcttggtgaagcttctttcttattatgaggatttacaagacgtaattgctatgaccccttttctgaagatcttggatttaatgcatggaagttcacaaagcatcgtcaatatgcagatccttgacatggggataaggaatggttatatacgtgatcggacaactatacagtttctttttgaaatttcccaggctctacatgatgatgaaatttttgtgaatgtaaaagatgattctaaccaagcagcacgtttgatttcttcttttgtctcactggttgattatggggcagagttggaaagtcatttgaccttcttagttgaatgccgtgcagcttttggtagcatacactggcttaaggaaacacttgttcactcgagtaattgtttagcaattaaggctctgaaagatgggagtagacatatcagttttatcaaatcctgcatagcattttctgaagtcacattaccttctatttcagctcagactaagcagttaaatctgtatcttgagactgcagaggtagccttacttggtggtctagtttcacattcagatggactgattgactcagcaatcaactctttgcaaatttcagaagtgatggatgggtccagaacaccaattgatgctgatggaatactctcctcaattcaaaagttattcagcctcttggttatggttccaggtaatcctgagcatggagttactttctatccaaagaacttggtatcgcttgtaaattctcagccatggatgccaccaagaatgagagtgaagattttttgtgcagttgtttctctgttagcggcactatctcaacgagatctgccttatcatgcagataagggaaagcttctaggaaacgacatactgttctttggtcattcatcgtatttaagtgagcttgtcttgatgtgcaagtttgttcttcaaaacatggttgatactattcaacaagaaccttccaaggctgctcgtggaagtatggcgcttgaagcttgcaactgcattgcatcatctttcattccaagtcaggaaatatcctcaatttgcgccaatctaatagaaactgggaagtcgtgtatgggcaccagccacccgtatctgctatcgacaatcaaatttacggatcagttactgcttccttctattgcagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps35

Protein Analysis

958

Amino Acids

107.17

Weight (kDa)

5.61

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps35 PF03635 464 - 755 1.9e-07 Vacuolar protein sorting-associated protein 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1708
AccB1I GGYRCC 1 cut(s) 2804
AccBSI CCGCTC 2 cut(s) 212, 280
AccI GTMKAC 1 cut(s) 2131
AccII CGCG 2 cut(s) 173, 189
AciI CCGC 7 cut(s) 87, 210, 278, 424, 561, 1147, 2522
AclWI GGATC 5 cut(s) 530, 1025, 1309, 1825, 2853
AcsI RAATTY 7 cut(s) 545, 1134, 1896, 1923, 2304, 2455, 2837
AcuI CTGAAG 5 cut(s) 825, 980, 1707, 1799, 2190
AfaI GTAC 2 cut(s) 1281, 1574
AfeI AGCGCT 1 cut(s) 1001
AfiI CCNNNNNNNGG 2 cut(s) 1840, 2414
AflII CTTAAG 1 cut(s) 2069
AhdI GACNNNNNGTC 2 cut(s) 30, 101
AhlI ACTAGT 1 cut(s) 1282
AjnI CCWGG 2 cut(s) 1902, 2398
AjuI GAANNNNNNNTTGG 2 cut(s) 1628, 1660
Alw21I GWGCWC 2 cut(s) 609, 945
Alw26I GTCTC 5 cut(s) 225, 403, 439, 1987, 2219
AlwI GGATC 5 cut(s) 530, 1025, 1309, 1825, 2853
AlwNI CAGNNNCTG 1 cut(s) 2854
Ama87I CYCGRG 3 cut(s) 70, 233, 2089
Aor51HI AGCGCT 1 cut(s) 1001
AoxI GGCC 3 cut(s) 137, 1065, 1561
ApeKI GCWGC 6 cut(s) 302, 421, 1318, 1958, 2045, 2687
ApoI RAATTY 7 cut(s) 545, 1134, 1896, 1923, 2304, 2455, 2837
Asp700I GAANNNNTTC 1 cut(s) 1170
AspLEI GCGC 6 cut(s) 175, 191, 1002, 1340, 2707, 2771
AspS9I GGNCC 4 cut(s) 4, 103, 1066, 2325
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 4 cut(s) 221, 1105, 1162, 1732
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 3 cut(s) 70, 233, 2089
AvaII GGWCC 3 cut(s) 4, 103, 2325
BaeGI GKGCMC 2 cut(s) 1511, 2807
BanI GGYRCC 1 cut(s) 2804
BanII GRGCYC 2 cut(s) 609, 945
BarI GAAGNNNNNNTAC 2 cut(s) 2163, 2195
BauI CACGAG 2 cut(s) 602, 2691
BbsI GAAGAC 3 cut(s) 58, 342, 986
Bbv12I GWGCWC 2 cut(s) 609, 945
BbvI GCAGC 6 cut(s) 314, 433, 1305, 1970, 2057, 2674
BccI CCATC 9 cut(s) 248, 391, 685, 803, 2117, 2264, 2311, 2315, 2342
BceAI ACGGC 1 cut(s) 2025
BciT130I CCWGG 2 cut(s) 1904, 2400
BciVI GTATCC 1 cut(s) 688
BclI TGATCA 1 cut(s) 1447
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 5 cut(s) 225, 403, 439, 1987, 2219
BcuI ACTAGT 1 cut(s) 1282
BfaI CTAG 5 cut(s) 986, 1283, 1361, 2255, 2573
BfmI CTRYAG 2 cut(s) 312, 2229
BfoI RGCGCY 2 cut(s) 1003, 2708
BfrI CTTAAG 1 cut(s) 2069
BfuI GTATCC 1 cut(s) 688
BglI GCCNNNNNGGC 1 cut(s) 961
BglII AGATCT 2 cut(s) 1782, 2539
BisI GCNGC 8 cut(s) 303, 422, 562, 1319, 1959, 2046, 2523, 2688
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 8 cut(s) 304, 423, 563, 1320, 1960, 2047, 2524, 2689
BmcAI AGTACT 1 cut(s) 1574
Bme1390I CCNGG 3 cut(s) 595, 1904, 2400
Bme18I GGWCC 3 cut(s) 4, 103, 2325
BmeRI GACNNNNNGTC 2 cut(s) 30, 101
BmeT110I CYCGRG 3 cut(s) 70, 233, 2089
BmgT120I GGNCC 4 cut(s) 4, 103, 1066, 2325
BmiI GGNNCC 6 cut(s) 814, 1221, 1331, 2326, 2397, 2806
BmrFI CCNGG 3 cut(s) 595, 1904, 2400
BmrI ACTGGG 1 cut(s) 2796
BmuI ACTGGG 1 cut(s) 2796
BpiI GAAGAC 3 cut(s) 58, 342, 986
BpmI CTGGAG 2 cut(s) 103, 343
Bpu10I CCTNAGC 1 cut(s) 2409
Bpu1102I GCTNAGC 1 cut(s) 681
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 2 cut(s) 1378, 2243
BpuMI CCSGG 1 cut(s) 595
Bsa29I ATCGAT 1 cut(s) 110
BsaAI YACGTR 2 cut(s) 929, 1865
BsaI GGTCTC 2 cut(s) 403, 439
BsaJI CCNNGG 6 cut(s) 126, 234, 1266, 1902, 2465, 2682
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 1622, 1652
Bsc4I CCNNNNNNNGG 2 cut(s) 1840, 2414
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 6 cut(s) 30, 360, 534, 1992, 2069, 2791
Bse3DI GCAATG 2 cut(s) 1438, 2724
BseBI CCWGG 2 cut(s) 1904, 2400
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 6 cut(s) 126, 234, 1266, 1902, 2465, 2682
BseGI GGATG 7 cut(s) 26, 199, 1109, 1594, 1630, 2326, 2475
BseLI CCNNNNNNNGG 2 cut(s) 1840, 2414
BseMI GCAATG 2 cut(s) 1438, 2724
BseMII CTCAG 5 cut(s) 295, 2210, 2298, 2400, 2474
BseNI ACTGG 6 cut(s) 30, 360, 534, 1992, 2069, 2791
BseRI GAGGAG 1 cut(s) 2350
BseSI GKGCMC 2 cut(s) 1511, 2807
BseXI GCAGC 6 cut(s) 314, 433, 1305, 1970, 2057, 2674
BsgI GTGCAG 2 cut(s) 2064, 2523
Bsh1236I CGCG 2 cut(s) 173, 189
BshFI GGCC 3 cut(s) 139, 1067, 1563
BshNI GGYRCC 1 cut(s) 2804
BshVI ATCGAT 1 cut(s) 110
BsiHKAI GWGCWC 2 cut(s) 609, 945
BsiHKCI CYCGRG 3 cut(s) 70, 233, 2089
BsiSI CCGG 3 cut(s) 431, 595, 1116
BslFI GGGAC 3 cut(s) 104, 272, 366
BslI CCNNNNNNNGG 2 cut(s) 1840, 2414
BsmAI GTCTC 5 cut(s) 225, 403, 439, 1987, 2219
BsmFI GGGAC 3 cut(s) 104, 272, 366
BsmI GAATGC 1 cut(s) 2042
BsnI GGCC 3 cut(s) 139, 1067, 1563
Bso31I GGTCTC 2 cut(s) 403, 439
BsoBI CYCGRG 3 cut(s) 70, 233, 2089
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 4 cut(s) 609, 945, 1511, 2807
Bsp1720I GCTNAGC 1 cut(s) 681
Bsp19I CCATGG 2 cut(s) 126, 2465
BspACI CCGC 7 cut(s) 87, 210, 278, 424, 561, 1147, 2522
BspANI GGCC 3 cut(s) 139, 1067, 1563
BspCNI CTCAG 5 cut(s) 294, 2209, 2297, 2401, 2473
BspDI ATCGAT 1 cut(s) 110
BspFNI CGCG 2 cut(s) 173, 189
BspHI TCATGA 3 cut(s) 1093, 1123, 1239
BspLI GGNNCC 6 cut(s) 814, 1221, 1331, 2326, 2397, 2806
BspMAI CTGCAG 1 cut(s) 2233
BspPI GGATC 5 cut(s) 530, 1025, 1309, 1825, 2853
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 2804
BspTI CTTAAG 1 cut(s) 2069
BspTNI GGTCTC 2 cut(s) 403, 439
BsrBI CCGCTC 2 cut(s) 212, 280
BsrDI GCAATG 2 cut(s) 1438, 2724
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 6 cut(s) 30, 360, 534, 1992, 2069, 2791
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 6 cut(s) 126, 234, 1266, 1902, 2465, 2682
BssSI CACGAG 2 cut(s) 602, 2691
BssT1I CCWWGG 3 cut(s) 126, 2465, 2682
Bst2BI CACGAG 2 cut(s) 602, 2691
Bst2UI CCWGG 2 cut(s) 1904, 2400
Bst4CI ACNGT 9 cut(s) 41, 103, 341, 445, 992, 1052, 1513, 1884, 2589
Bst6I CTCTTC 1 cut(s) 549
BstAFI CTTAAG 1 cut(s) 2069
BstBAI YACGTR 2 cut(s) 929, 1865
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 5 cut(s) 636, 945, 962, 1669, 2716
BstDEI CTNAG 8 cut(s) 281, 681, 2029, 2196, 2202, 2284, 2409, 2460
BstDSI CCRYGG 2 cut(s) 126, 2465
BstF5I GGATG 7 cut(s) 26, 199, 1109, 1594, 1630, 2326, 2475
BstFNI CGCG 2 cut(s) 173, 189
BstH2I RGCGCY 2 cut(s) 1003, 2708
BstHHI GCGC 6 cut(s) 175, 191, 1002, 1340, 2707, 2771
BstMAI GTCTC 5 cut(s) 225, 403, 439, 1987, 2219
BstMWI GCNNNNNNNGC 7 cut(s) 800, 961, 970, 2111, 2237, 2470, 2711
BstNI CCWGG 2 cut(s) 1904, 2400
BstNSI RCATGY 2 cut(s) 638, 1671
BstSCI CCNGG 3 cut(s) 593, 1902, 2398
BstSFI CTRYAG 2 cut(s) 312, 2229
BstSLI GKGCMC 2 cut(s) 1511, 2807
BstUI CGCG 2 cut(s) 173, 189
BstV1I GCAGC 6 cut(s) 314, 433, 1305, 1970, 2057, 2674
BstV2I GAAGAC 3 cut(s) 58, 342, 986
BstX2I RGATCY 6 cut(s) 535, 1030, 1301, 1782, 1830, 2539
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 6 cut(s) 535, 1030, 1301, 1782, 1830, 2539
Bsu15I ATCGAT 1 cut(s) 110
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 3 cut(s) 139, 1067, 1563
BsuTUI ATCGAT 1 cut(s) 110
BtgI CCRYGG 2 cut(s) 126, 2465
BtsCI GGATG 7 cut(s) 26, 199, 1109, 1594, 1630, 2326, 2475
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 7 cut(s) 150, 367, 413, 1457, 1509, 1985, 2062
Cac8I GCNNGC 5 cut(s) 636, 945, 962, 1669, 2716
CaiI CAGNNNCTG 1 cut(s) 2854
CciI TCATGA 3 cut(s) 1093, 1123, 1239
CfoI GCGC 6 cut(s) 175, 191, 1002, 1340, 2707, 2771
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 4 cut(s) 4, 103, 1066, 2325
ClaI ATCGAT 1 cut(s) 110
CseI GACGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 1280, 1573
CviQI GTAC 2 cut(s) 1280, 1573
DdeI CTNAG 8 cut(s) 281, 681, 2029, 2196, 2202, 2284, 2409, 2460
DraI TTTAAA 1 cut(s) 1255
DrdI GACNNNNNNGTC 1 cut(s) 1708
DriI GACNNNNNGTC 2 cut(s) 30, 101
DseDI GACNNNNNNGTC 1 cut(s) 1708
Eam1104I CTCTTC 1 cut(s) 549
Eam1105I GACNNNNNGTC 2 cut(s) 30, 101
EarI CTCTTC 1 cut(s) 549
Ecl136II GAGCTC 2 cut(s) 607, 943
Eco130I CCWWGG 3 cut(s) 126, 2465, 2682
Eco147I AGGCCT 2 cut(s) 139, 1563
Eco24I GRGCYC 2 cut(s) 609, 945
Eco31I GGTCTC 2 cut(s) 403, 439
Eco32I GATATC 1 cut(s) 1155
Eco47I GGWCC 3 cut(s) 4, 103, 2325
Eco47III AGCGCT 1 cut(s) 1001
Eco53kI GAGCTC 2 cut(s) 607, 943
Eco57I CTGAAG 5 cut(s) 825, 980, 1707, 1799, 2190
Eco88I CYCGRG 3 cut(s) 70, 233, 2089
EcoICRI GAGCTC 2 cut(s) 607, 943
EcoRII CCWGG 2 cut(s) 1902, 2398
EcoRV GATATC 1 cut(s) 1155
EcoT14I CCWWGG 3 cut(s) 126, 2465, 2682
EcoT22I ATGCAT 3 cut(s) 519, 1250, 1800
EcoT38I GRGCYC 2 cut(s) 609, 945
ErhI CCWWGG 3 cut(s) 126, 2465, 2682
FaqI GGGAC 3 cut(s) 104, 272, 366
FauI CCCGC 3 cut(s) 80, 285, 1140
FauNDI CATATG 1 cut(s) 1620
FbaI TGATCA 1 cut(s) 1447
FblI GTMKAC 1 cut(s) 2131
Fnu4HI GCNGC 8 cut(s) 303, 422, 562, 1319, 1959, 2046, 2523, 2688
FokI GGATG 7 cut(s) 13, 186, 1116, 1601, 1637, 2333, 2482
FriOI GRGCYC 2 cut(s) 609, 945
Fsp4HI GCNGC 8 cut(s) 303, 422, 562, 1319, 1959, 2046, 2523, 2688
FspBI CTAG 5 cut(s) 986, 1283, 1361, 2255, 2573
GlaI GCGC 6 cut(s) 174, 190, 1001, 1339, 2706, 2770
GluI GCNGC 8 cut(s) 303, 422, 562, 1319, 1959, 2046, 2523, 2688
GsuI CTGGAG 2 cut(s) 103, 343
HaeII RGCGCY 2 cut(s) 1003, 2708
HaeIII GGCC 3 cut(s) 139, 1067, 1563
HapII CCGG 3 cut(s) 431, 595, 1116
HgaI GACGC 1 cut(s) 41
HhaI GCGC 6 cut(s) 175, 191, 1002, 1340, 2707, 2771
Hin6I GCGC 6 cut(s) 173, 189, 1000, 1338, 2705, 2769
HinP1I GCGC 6 cut(s) 173, 189, 1000, 1338, 2705, 2769
HindIII AAGCTT 5 cut(s) 366, 683, 1724, 2567, 2712
HinfI GANTC 6 cut(s) 354, 373, 1424, 1439, 1946, 2282
HpaII CCGG 3 cut(s) 431, 595, 1116
HphI GGTGA 4 cut(s) 221, 1105, 1162, 1732
Hpy166II GTNNAC 5 cut(s) 1528, 1600, 1808, 2086, 2132
Hpy8I GTNNAC 5 cut(s) 1528, 1600, 1808, 2086, 2132
Hpy99I CGWCG 2 cut(s) 57, 197
HpyCH4III ACNGT 9 cut(s) 41, 103, 341, 445, 992, 1052, 1513, 1884, 2589
HpyCH4IV ACGT 4 cut(s) 928, 1755, 1864, 1963
HpyF10VI GCNNNNNNNGC 7 cut(s) 800, 961, 970, 2111, 2237, 2470, 2711
HpyF3I CTNAG 8 cut(s) 281, 681, 2029, 2196, 2202, 2284, 2409, 2460
HpySE526I ACGT 4 cut(s) 928, 1755, 1864, 1963
HspAI GCGC 6 cut(s) 173, 189, 1000, 1338, 2705, 2769
Ksp22I TGATCA 1 cut(s) 1447
LmnI GCTCC 6 cut(s) 128, 217, 866, 940, 1288, 1315
Lsp1109I GCAGC 6 cut(s) 314, 433, 1305, 1970, 2057, 2674
MaeI CTAG 5 cut(s) 986, 1283, 1361, 2255, 2573
MaeII ACGT 4 cut(s) 928, 1755, 1864, 1963
MaeIII GTNAC 9 cut(s) 411, 597, 649, 828, 1083, 1467, 2173, 2419, 2850
MbiI CCGCTC 2 cut(s) 212, 280
MfeI CAATTG 1 cut(s) 2337
MflI RGATCY 6 cut(s) 535, 1030, 1301, 1782, 1830, 2539
MhlI GDGCHC 4 cut(s) 609, 945, 1511, 2807
MlyI GAGTC 3 cut(s) 348, 1433, 2276
MmeI TCCRAC 1 cut(s) 1989
Mph1103I ATGCAT 3 cut(s) 519, 1250, 1800
MroXI GAANNNNTTC 1 cut(s) 1170
MseI TTAA 7 cut(s) 405, 1254, 1793, 2070, 2109, 2210, 2612
MslI CAYNNNNRTG 5 cut(s) 639, 1092, 1623, 1917, 2268
MspA1I CMGCKG 1 cut(s) 424
MspCI CTTAAG 1 cut(s) 2069
MspI CCGG 3 cut(s) 431, 595, 1116
MspR9I CCNGG 3 cut(s) 595, 1904, 2400
MunI CAATTG 1 cut(s) 2337
Mva1269I GAATGC 1 cut(s) 2042
MvaI CCWGG 2 cut(s) 1904, 2400
MvnI CGCG 2 cut(s) 173, 189
MwoI GCNNNNNNNGC 7 cut(s) 800, 961, 970, 2111, 2237, 2470, 2711
NciI CCSGG 1 cut(s) 595
NcoI CCATGG 2 cut(s) 126, 2465
NdeI CATATG 1 cut(s) 1620
NlaIV GGNNCC 6 cut(s) 814, 1221, 1331, 2326, 2397, 2806
NmeAIII GCCGAG 2 cut(s) 73, 181
NmuCI GTSAC 3 cut(s) 411, 649, 2173
NsiI ATGCAT 3 cut(s) 519, 1250, 1800
NspI RCATGY 2 cut(s) 638, 1671
NspV TTCGAA 1 cut(s) 14
PaeI GCATGC 2 cut(s) 638, 1671
PaeR7I CTCGAG 1 cut(s) 2089
PagI TCATGA 3 cut(s) 1093, 1123, 1239
PceI AGGCCT 2 cut(s) 139, 1563
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 107
PctI GAATGC 1 cut(s) 2042
PdmI GAANNNNTTC 1 cut(s) 1170
PfeI GAWTC 3 cut(s) 373, 1439, 1946
PkrI GCNGC 8 cut(s) 304, 423, 563, 1320, 1960, 2047, 2524, 2689
PleI GAGTC 3 cut(s) 348, 1432, 2276
PpsI GAGTC 3 cut(s) 348, 1432, 2276
Ppu21I YACGTR 2 cut(s) 929, 1865
Psp124BI GAGCTC 2 cut(s) 609, 945
Psp6I CCWGG 2 cut(s) 1902, 2398
PspGI CCWGG 2 cut(s) 1902, 2398
PspN4I GGNNCC 6 cut(s) 814, 1221, 1331, 2326, 2397, 2806
PspPI GGNCC 4 cut(s) 4, 103, 1066, 2325
PspXI VCTCGAGB 1 cut(s) 2089
PstI CTGCAG 1 cut(s) 2233
PstNI CAGNNNCTG 1 cut(s) 2854
PsuI RGATCY 6 cut(s) 535, 1030, 1301, 1782, 1830, 2539
RsaI GTAC 2 cut(s) 1281, 1574
RsaNI GTAC 2 cut(s) 1280, 1573
RseI CAYNNNNRTG 5 cut(s) 639, 1092, 1623, 1917, 2268
SacI GAGCTC 2 cut(s) 609, 945
SaqAI TTAA 7 cut(s) 405, 1254, 1793, 2070, 2109, 2210, 2612
SatI GCNGC 8 cut(s) 303, 422, 562, 1319, 1959, 2046, 2523, 2688
Sau96I GGNCC 4 cut(s) 4, 103, 1066, 2325
ScaI AGTACT 1 cut(s) 1574
SchI GAGTC 3 cut(s) 348, 1433, 2276
ScrFI CCNGG 3 cut(s) 595, 1904, 2400
SduI GDGCHC 4 cut(s) 609, 945, 1511, 2807
SfcI CTRYAG 2 cut(s) 312, 2229
Sfr274I CTCGAG 1 cut(s) 2089
SfuI TTCGAA 1 cut(s) 14
SgrAI CRCCGGYG 1 cut(s) 1115
SinI GGWCC 3 cut(s) 4, 103, 2325
SlaI CTCGAG 1 cut(s) 2089
SmiMI CAYNNNNRTG 5 cut(s) 639, 1092, 1623, 1917, 2268
SmlI CTYRAG 4 cut(s) 1393, 2069, 2089, 2222
SmoI CTYRAG 4 cut(s) 1393, 2069, 2089, 2222
SpeI ACTAGT 1 cut(s) 1282
SphI GCATGC 2 cut(s) 638, 1671
SseBI AGGCCT 2 cut(s) 139, 1563
SsiI CCGC 7 cut(s) 87, 210, 278, 424, 561, 1147, 2522
SspMI CTAG 5 cut(s) 986, 1283, 1361, 2255, 2573
SstI GAGCTC 2 cut(s) 609, 945
StuI AGGCCT 2 cut(s) 139, 1563
StyD4I CCNGG 3 cut(s) 593, 1902, 2398
StyI CCWWGG 3 cut(s) 126, 2465, 2682
TaaI ACNGT 9 cut(s) 41, 103, 341, 445, 992, 1052, 1513, 1884, 2589
TaiI ACGT 4 cut(s) 931, 1758, 1867, 1966
TaqI TCGA 7 cut(s) 14, 110, 181, 371, 979, 2090, 2828
TatI WGTACW 2 cut(s) 1279, 1572
TauI GCSGC 2 cut(s) 564, 2525
TfiI GAWTC 3 cut(s) 373, 1439, 1946
Tru1I TTAA 7 cut(s) 405, 1254, 1793, 2070, 2109, 2210, 2612
Tru9I TTAA 7 cut(s) 405, 1254, 1793, 2070, 2109, 2210, 2612
TscAI CASTG 7 cut(s) 157, 367, 420, 1457, 1516, 1992, 2069
TseFI GTSAC 3 cut(s) 411, 649, 2173
TseI GCWGC 6 cut(s) 302, 421, 1318, 1958, 2045, 2687
Tsp45I GTSAC 3 cut(s) 411, 649, 2173
TspDTI ATGAA 9 cut(s) 832, 1112, 1256, 1343, 1572, 1707, 1935, 2592, 2728
TspGWI ACGGA 4 cut(s) 52, 112, 755, 2858
TspRI CASTG 7 cut(s) 157, 367, 420, 1457, 1516, 1992, 2069
Vha464I CTTAAG 1 cut(s) 2069
VpaK11BI GGWCC 3 cut(s) 4, 103, 2325
XapI RAATTY 7 cut(s) 545, 1134, 1896, 1923, 2304, 2455, 2837
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 2 cut(s) 638, 1671
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XhoI CTCGAG 1 cut(s) 2089
XmiI GTMKAC 1 cut(s) 2131
XmnI GAANNNNTTC 1 cut(s) 1170
XspI CTAG 5 cut(s) 986, 1283, 1361, 2255, 2573
ZrmI AGTACT 1 cut(s) 1574
Zsp2I ATGCAT 3 cut(s) 519, 1250, 1800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.