Rmu_sc0001670.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001670.1
OG0009433
Physical Location & Seq
Reverse (-)
141386 .. 144996
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
atggagctgcaatcagtttgtcttgggattcccacctcaaatttcactttatccaataaccgtatatcccctcaccaaagtgttacagcaaaccacggtgggcaattccgtactagaattgcttccaaatcttattttgtgccgggattaaatatgtttgtgaagaagtcttcaatgctttgcttgaacaaaggagctattatgtgtgcttctaaccctagtctggatgggaagttggagttctcgagagagaaagattctaacgtccctagtaaggcaactgatacggtggagccttttcgtggcaagtcgggttcaatttcgttttgtgggttgacacaccaattggtagaggaagggaaattgctttcagccccgttcgatgaagagaaggggtcgtttctttggtttttagctcctgttgccttgattgcatcgtttatttttccgcagttcttcattggtaatgcaattgaaggttacttgaaggacgaggttctcgtagaaatcgcaacttcattatcttcagaggctgtattttatgtgggacttgcgacatttttacttgtcactgaccatgttcagaggccctatctacagttcagtacaaagagatggggtctcattactggcctaagaggatacttgacatctgctttcttcacatcgggcttcaaggtggttgcacctctagtcgctgtttatgtaacctggccagtgcttggcttgccagccttggttgctgttgctccctttctagttggttgtgctgctcagcttgcatttgagagggtacttgacaagcgagggtcatcttgttggcctctagttcctattatttttgaggtttacagactatatcagctgataaaagctgattactttatcaagaaattgatgtatacaatgaacggtcttcctacatccccagaacttctagagaaaagcggtgcattatttgcaatggaggtcactgtcggaaccctttgtgtgtcggcctctcagcactggaagaaaaagaattataacgtcgtcgtatttggcattgttgcggttttcttccagttcctcgctgacgattcgagagtcggcgaaaacagaaagcagagcattttccatacattccggctgaaattcaagcattcctcttctggaatggcgaagtcttgcagtggcctagcagatgagctagtcaagtgtcttagtgagtgtgattgcattaaggttgagaagcggtcgatccgggaatgtgccggagagaagagcccatcgatatctagcgaatgtatcggtctgagggaaacatatttcaattgcaagagaggccaggttgacatgagaaataggattcgcgggaacaaaggctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

50.53

Weight (kDa)

9.11

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pet191_N PF10203 388 - 453 6.2e-21 Cytochrome c oxidase assembly protein PET191
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AccB7I CCANNNNNTGG 1 cut(s) 722
AccI GTMKAC 1 cut(s) 902
AccII CGCG 1 cut(s) 1353
AciI CCGC 5 cut(s) 449, 948, 1052, 1234, 1353
AclWI GGATC 1 cut(s) 1234
AcoI YGGCCR 1 cut(s) 713
AcsI RAATTY 2 cut(s) 40, 1133
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 3 cut(s) 112, 607, 795
AfiI CCNNNNNNNGG 4 cut(s) 223, 274, 302, 722
AgsI TTSAA 8 cut(s) 174, 187, 318, 476, 487, 676, 1138, 1312
AjnI CCWGG 2 cut(s) 710, 1326
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 7 cut(s) 7, 197, 416, 778, 865, 875, 1189
AluI AGCT 7 cut(s) 7, 197, 416, 778, 865, 875, 1189
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 1 cut(s) 1234
AlwNI CAGNNNCTG 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 7 cut(s) 587, 631, 713, 821, 996, 1174, 1324
ApeKI GCWGC 2 cut(s) 7, 770
ApoI RAATTY 2 cut(s) 40, 1133
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 588
AsuC2I CCSGG 2 cut(s) 144, 1244
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 244
BalI TGGCCA 1 cut(s) 715
BanII GRGCYC 1 cut(s) 1268
BbsI GAAGAC 2 cut(s) 162, 908
BbvI GCAGC 1 cut(s) 757
BccI CCATC 3 cut(s) 221, 609, 1276
BciT130I CCWGG 2 cut(s) 712, 1328
BciVI GTATCC 1 cut(s) 635
BcnI CCSGG 2 cut(s) 144, 1244
BcoDI GTCTC 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 635
BisI GCNGC 2 cut(s) 8, 771
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 2 cut(s) 9, 772
Bme1390I CCNGG 4 cut(s) 144, 712, 1244, 1328
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 2 cut(s) 294, 982
BmrFI CCNGG 4 cut(s) 144, 712, 1244, 1328
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 2 cut(s) 162, 908
Bpu1102I GCTNAGC 1 cut(s) 774
BpuMI CCSGG 2 cut(s) 144, 1244
Bsa29I ATCGAT 1 cut(s) 1271
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 2 cut(s) 94, 735
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 274, 302, 722
Bse1I ACTGG 4 cut(s) 634, 716, 1013, 1063
Bse3DI GCAATG 1 cut(s) 969
BseBI CCWGG 2 cut(s) 712, 1328
BseCI ATCGAT 1 cut(s) 1271
BseDI CCNNGG 2 cut(s) 94, 735
BseGI GGATG 2 cut(s) 232, 923
BseLI CCNNNNNNNGG 4 cut(s) 223, 274, 302, 722
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 3 cut(s) 788, 1016, 1286
BseNI ACTGG 4 cut(s) 634, 716, 1013, 1063
BseXI GCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 1353
Bsh1285I CGRYCG 1 cut(s) 1238
BshFI GGCC 7 cut(s) 589, 633, 715, 823, 998, 1176, 1326
BshVI ATCGAT 1 cut(s) 1271
BsiEI CGRYCG 1 cut(s) 1238
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 4 cut(s) 143, 1126, 1243, 1254
BslFI GGGAC 2 cut(s) 251, 561
BslI CCNNNNNNNGG 4 cut(s) 223, 274, 302, 722
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 2 cut(s) 251, 561
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 7 cut(s) 589, 633, 715, 823, 998, 1176, 1326
Bso31I GGTCTC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 1268
Bsp143I GATC 1 cut(s) 1239
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 5 cut(s) 449, 948, 1052, 1234, 1353
BspANI GGCC 7 cut(s) 589, 633, 715, 823, 998, 1176, 1326
BspCNI CTCAG 3 cut(s) 787, 1015, 1287
BspDI ATCGAT 1 cut(s) 1271
BspFNI CGCG 1 cut(s) 1353
BspLI GGNNCC 2 cut(s) 294, 982
BspPI GGATC 1 cut(s) 1234
BspQI GCTCTTC 1 cut(s) 1256
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 969
BsrI ACTGG 4 cut(s) 634, 716, 1013, 1063
BssECI CCNNGG 2 cut(s) 94, 735
BssMI GATC 1 cut(s) 1239
BssNAI GTATAC 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 735
Bst1107I GTATAC 1 cut(s) 903
Bst2UI CCWGG 2 cut(s) 712, 1328
Bst4CI ACNGT 6 cut(s) 62, 98, 289, 600, 914, 976
Bst6I CTCTTC 3 cut(s) 381, 1153, 1256
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 3 cut(s) 728, 732, 780
BstDEI CTNAG 5 cut(s) 635, 774, 1002, 1202, 1295
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 232, 923
BstFNI CGCG 1 cut(s) 1353
BstKTI GATC 1 cut(s) 1242
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 1 cut(s) 1239
BstMCI CGRYCG 1 cut(s) 1238
BstMWI GCNNNNNNNGC 7 cut(s) 422, 431, 727, 740, 779, 959, 1323
BstNI CCWGG 2 cut(s) 712, 1328
BstSCI CCNGG 4 cut(s) 142, 710, 1242, 1326
BstSFI CTRYAG 1 cut(s) 596
BstUI CGCG 1 cut(s) 1353
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 2 cut(s) 162, 908
BstZ17I GTATAC 1 cut(s) 903
Bsu15I ATCGAT 1 cut(s) 1271
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 7 cut(s) 589, 633, 715, 823, 998, 1176, 1326
BsuTUI ATCGAT 1 cut(s) 1271
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 232, 923
BtsI GCAGTG 1 cut(s) 1177
BtsIMutI CAGTG 5 cut(s) 570, 723, 972, 1006, 1177
Cac8I GCNNGC 3 cut(s) 728, 732, 780
CaiI CAGNNNCTG 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 588
ClaI ATCGAT 1 cut(s) 1271
Csp6I GTAC 3 cut(s) 111, 606, 794
CviAII CATG 2 cut(s) 578, 1336
CviQI GTAC 3 cut(s) 111, 606, 794
DdeI CTNAG 5 cut(s) 635, 774, 1002, 1202, 1295
DpnI GATC 1 cut(s) 1241
DpnII GATC 1 cut(s) 1239
EaeI YGGCCR 1 cut(s) 713
Eam1104I CTCTTC 3 cut(s) 381, 1153, 1256
EarI CTCTTC 3 cut(s) 381, 1153, 1256
Eco130I CCWWGG 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 1268
Eco31I GGTCTC 1 cut(s) 626
Eco32I GATATC 1 cut(s) 1275
Eco57I CTGAAG 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 2 cut(s) 710, 1326
EcoRV GATATC 1 cut(s) 1275
EcoT14I CCWWGG 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 1268
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 2 cut(s) 581, 1339
FaqI GGGAC 2 cut(s) 251, 561
FatI CATG 2 cut(s) 577, 1335
FauI CCCGC 1 cut(s) 1346
FblI GTMKAC 1 cut(s) 902
Fnu4HI GCNGC 2 cut(s) 8, 771
FokI GGATG 2 cut(s) 239, 910
FriOI GRGCYC 1 cut(s) 1268
Fsp4HI GCNGC 2 cut(s) 8, 771
GluI GCNGC 2 cut(s) 8, 771
HaeIII GGCC 7 cut(s) 589, 633, 715, 823, 998, 1176, 1326
HapII CCGG 4 cut(s) 143, 1126, 1243, 1254
Hin1II CATG 2 cut(s) 581, 1339
HincII GTYRAC 2 cut(s) 336, 1333
HindII GTYRAC 2 cut(s) 336, 1333
HinfI GANTC 5 cut(s) 28, 257, 1079, 1086, 1348
HpaII CCGG 4 cut(s) 143, 1126, 1243, 1254
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 4 cut(s) 336, 850, 903, 1333
Hpy188I TCNGA 4 cut(s) 529, 585, 980, 1296
Hpy188III TCNNGA 7 cut(s) 224, 244, 246, 889, 938, 1083, 1152
Hpy8I GTNNAC 4 cut(s) 336, 850, 903, 1333
Hpy99I CGWCG 2 cut(s) 1034, 1037
HpyAV CCTTC 4 cut(s) 350, 385, 470, 481
HpyCH4III ACNGT 6 cut(s) 62, 98, 289, 600, 914, 976
HpyCH4IV ACGT 2 cut(s) 264, 1029
HpyF10VI GCNNNNNNNGC 7 cut(s) 422, 431, 727, 740, 779, 959, 1323
HpyF3I CTNAG 5 cut(s) 635, 774, 1002, 1202, 1295
HpySE526I ACGT 2 cut(s) 264, 1029
Hsp92II CATG 2 cut(s) 581, 1339
Kzo9I GATC 1 cut(s) 1239
LguI GCTCTTC 1 cut(s) 1256
LmnI GCTCC 5 cut(s) 4, 194, 292, 421, 754
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 1 cut(s) 443
MaeII ACGT 2 cut(s) 264, 1029
MaeIII GTNAC 5 cut(s) 82, 479, 568, 706, 970
MalI GATC 1 cut(s) 1241
MboI GATC 1 cut(s) 1239
MfeI CAATTG 3 cut(s) 344, 471, 1312
MhlI GDGCHC 1 cut(s) 1268
MlsI TGGCCA 1 cut(s) 715
MluNI TGGCCA 1 cut(s) 715
MlyI GAGTC 1 cut(s) 1095
MmeI TCCRAC 2 cut(s) 216, 958
Mox20I TGGCCA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 1 cut(s) 715
MseI TTAA 2 cut(s) 149, 1221
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 715
MspA1I CMGCKG 1 cut(s) 865
MspI CCGG 4 cut(s) 143, 1126, 1243, 1254
MspR9I CCNGG 4 cut(s) 144, 712, 1244, 1328
MunI CAATTG 3 cut(s) 344, 471, 1312
Mva1269I GAATGC 1 cut(s) 1141
MvaI CCWGG 2 cut(s) 712, 1328
MvnI CGCG 1 cut(s) 1353
MwoI GCNNNNNNNGC 7 cut(s) 422, 431, 727, 740, 779, 959, 1323
NciI CCSGG 2 cut(s) 144, 1244
NdeII GATC 1 cut(s) 1239
NlaIII CATG 2 cut(s) 581, 1339
NlaIV GGNNCC 2 cut(s) 294, 982
NmuCI GTSAC 2 cut(s) 568, 970
OliI CACNNNNGTG 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 1256
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PctI GAATGC 1 cut(s) 1141
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 4 cut(s) 28, 257, 1079, 1348
PflMI CCANNNNNTGG 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 1242
PkrI GCNGC 2 cut(s) 9, 772
PleI GAGTC 1 cut(s) 1094
PpsI GAGTC 1 cut(s) 1094
PsiI TTATAA 1 cut(s) 1026
Psp6I CCWGG 2 cut(s) 710, 1326
PspGI CCWGG 2 cut(s) 710, 1326
PspN4I GGNNCC 2 cut(s) 294, 982
PspPI GGNCC 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 865
RsaI GTAC 3 cut(s) 112, 607, 795
RsaNI GTAC 3 cut(s) 111, 606, 794
RseI CAYNNNNRTG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 1256
SaqAI TTAA 2 cut(s) 149, 1221
SatI GCNGC 2 cut(s) 8, 771
Sau3AI GATC 1 cut(s) 1239
Sau96I GGNCC 1 cut(s) 588
SchI GAGTC 1 cut(s) 1095
ScrFI CCNGG 4 cut(s) 144, 712, 1244, 1328
SduI GDGCHC 1 cut(s) 1268
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 596
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SsiI CCGC 5 cut(s) 449, 948, 1052, 1234, 1353
StyD4I CCNGG 4 cut(s) 142, 710, 1242, 1326
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 6 cut(s) 62, 98, 289, 600, 914, 976
TaiI ACGT 2 cut(s) 267, 1032
TaqI TCGA 5 cut(s) 245, 381, 1082, 1238, 1271
TaqII GACCGA 1 cut(s) 1280
TatI WGTACW 1 cut(s) 605
TfiI GAWTC 4 cut(s) 28, 257, 1079, 1348
Tru1I TTAA 2 cut(s) 149, 1221
Tru9I TTAA 2 cut(s) 149, 1221
TscAI CASTG 5 cut(s) 577, 723, 979, 1013, 1177
TseFI GTSAC 2 cut(s) 568, 970
TseI GCWGC 2 cut(s) 7, 770
Tsp45I GTSAC 2 cut(s) 568, 970
TspDTI ATGAA 4 cut(s) 399, 448, 507, 923
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 5 cut(s) 577, 723, 979, 1013, 1177
Van91I CCANNNNNTGG 1 cut(s) 722
XapI RAATTY 2 cut(s) 40, 1133
XbaI TCTAGA 1 cut(s) 937
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.