Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0016656

Physical Location & Seq

Genomic Coordinates Forward (+)

94104 .. 94697

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggcttcctcctcgacctcgtacaaagagtacgagatcagaaaaagaaacccaaacccgaaagtggctgcccttttagtcatcgacatgcagaactacttcgccgccatggctaagcctatcctccaaaacctcctcaccaccatccgtctctgccgacgcgcttccatccccgtcatcttcacgcgccactcccacaagtccccctccgactatggcatgctggacgagtggtggaacggcgacctcgtcttcgacgggactcccgagtcccagctgatgcccgagctcgaccgcaggccccaccaggaccacctcgtcgacaacaagaacacctacagcgccttccgcggcacgggcctcgaggactatttgaaggagaggggcgtccaggaggtcatcgtcaccggcgtcatgaccaacttgtgctgcgaaacgacggcgcgtgaggccttcgtccggggcttcagagtgttcttttctacggacgccactgccacttcggatgaagagctgcacgaggccaccttgaagaacttggcctatggctttgcctacctcgtcgattgcaacagacttgatcaagctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009117 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

197

Amino Acids

22.44

Weight (kDa)

5.74

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	23 - 189	3.8e-47	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23220 AT5G23230
malus_domestica	MD16G1003500.v1.1
prunus_persica	Prupe.1G348500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446811
rosa_laevigata	RLG00000005628
rosa_multiflora	Rmu_co8267649.1_g000001 Rmu_sc0001753.1_g000021
rosa_rugosa	Rorug04G0374900
rosa_samantha	Rh4AG436400 Rh4BG445500 Rh4CG462800 Rh4DG444200
rosa_wichuraiana	Rw4G037320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	268, 317
AbsI	CCTCGAGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	4 cut(s)	162, 187, 351, 445
AciI	CCGC	4 cut(s)	105, 295, 349, 351
AcuI	CTGAAG	1 cut(s)	451
AcyI	GRCGYC	3 cut(s)	387, 411, 489
AfaI	GTAC	2 cut(s)	23, 32
AfiI	CCNNNNNNNGG	3 cut(s)	64, 355, 459
AgsI	TTSAA	2 cut(s)	376, 532
AjnI	CCWGG	2 cut(s)	306, 390
AluBI	AGCT	4 cut(s)	277, 289, 514, 587
AluI	AGCT	4 cut(s)	277, 289, 514, 587
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	3 cut(s)	266, 284, 362
AoxI	GGCC	5 cut(s)	299, 358, 450, 522, 540
ApeKI	GCWGC	3 cut(s)	68, 429, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	4 cut(s)	164, 189, 344, 445
AspS9I	GGNCC	3 cut(s)	300, 310, 358
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	130, 397
AvaI	CYCGRG	3 cut(s)	266, 284, 362
AvaII	GGWCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	55, 416, 501
BccI	CCATC	2 cut(s)	152, 176
BceAI	ACGGC	2 cut(s)	256, 456
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciT130I	CCWGG	2 cut(s)	308, 392
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	5 cut(s)	69, 105, 352, 430, 515
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	5 cut(s)	70, 106, 353, 431, 516
Bme1390I	CCNGG	3 cut(s)	308, 392, 461
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	3 cut(s)	266, 284, 362
BmgT120I	GGNCC	3 cut(s)	300, 310, 358
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	3 cut(s)	308, 392, 461
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	461
BsaHI	GRCGYC	3 cut(s)	387, 411, 489
BsaJI	CCNNGG	3 cut(s)	108, 349, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 355, 459
Bse118I	RCCGGY	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	308, 392
BseDI	CCNNGG	3 cut(s)	108, 349, 460
BseGI	GGATG	3 cut(s)	144, 168, 511
BseLI	CCNNNNNNNGG	3 cut(s)	64, 355, 459
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	55, 416, 501
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	4 cut(s)	162, 187, 351, 445
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	5 cut(s)	301, 360, 452, 524, 542
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	3 cut(s)	266, 284, 362
BsiSI	CCGG	2 cut(s)	408, 460
BslFI	GGGAC	3 cut(s)	187, 256, 274
BslI	CCNNNNNNNGG	3 cut(s)	64, 355, 459
BsmAI	GTCTC	1 cut(s)	155
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	3 cut(s)	187, 256, 274
BsnI	GGCC	5 cut(s)	301, 360, 452, 524, 542
BsoBI	CYCGRG	3 cut(s)	266, 284, 362
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	36, 580
Bsp1720I	GCTNAGC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	4 cut(s)	105, 295, 349, 351
BspANI	GGCC	5 cut(s)	301, 360, 452, 524, 542
BspFNI	CGCG	4 cut(s)	162, 187, 351, 445
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	3 cut(s)	108, 349, 460
BssMI	GATC	2 cut(s)	36, 580
BssNI	GRCGYC	3 cut(s)	387, 411, 489
BssSI	CACGAG	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	2 cut(s)	308, 392
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	3 cut(s)	387, 411, 489
BstC8I	GCNNGC	2 cut(s)	221, 299
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	2 cut(s)	108, 349
BstF5I	GGATG	3 cut(s)	144, 168, 511
BstFNI	CGCG	4 cut(s)	162, 187, 351, 445
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	4 cut(s)	164, 189, 344, 445
BstKTI	GATC	2 cut(s)	39, 583
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	36, 580
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 348, 357, 449
BstNI	CCWGG	2 cut(s)	308, 392
BstNSI	RCATGY	2 cut(s)	91, 223
BstSCI	CCNGG	3 cut(s)	306, 390, 459
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	4 cut(s)	162, 187, 351, 445
BstV1I	GCAGC	3 cut(s)	55, 416, 501
BstV2I	GAAGAC	1 cut(s)	244
BsuRI	GGCC	5 cut(s)	301, 360, 452, 524, 542
BtgI	CCRYGG	2 cut(s)	108, 349
BtsCI	GGATG	3 cut(s)	144, 168, 511
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	221, 299
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	4 cut(s)	164, 189, 344, 445
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	300, 310, 358
Cfr42I	CCGCGG	1 cut(s)	352
CseI	GACGC	4 cut(s)	168, 376, 400, 497
Csp6I	GTAC	2 cut(s)	22, 31
CviAII	CATG	4 cut(s)	88, 109, 220, 415
CviQI	GTAC	2 cut(s)	22, 31
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	38, 582
DpnII	GATC	2 cut(s)	36, 580
DrdI	GACNNNNNNGTC	2 cut(s)	268, 317
DseDI	GACNNNNNNGTC	2 cut(s)	268, 317
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	451
Eco88I	CYCGRG	3 cut(s)	266, 284, 362
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	306, 390
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	4 cut(s)	91, 112, 223, 418
FaiI	YATR	6 cut(s)	89, 110, 216, 221, 416, 546
FaqI	GGGAC	3 cut(s)	187, 256, 274
FatI	CATG	4 cut(s)	87, 108, 219, 414
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	5 cut(s)	69, 105, 352, 430, 515
FokI	GGATG	3 cut(s)	131, 155, 518
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	69, 105, 352, 430, 515
GlaI	GCGC	4 cut(s)	163, 188, 343, 444
GluI	GCNGC	5 cut(s)	69, 105, 352, 430, 515
GsaI	CCCAGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	301, 360, 452, 524, 542
HapII	CCGG	2 cut(s)	408, 460
HgaI	GACGC	4 cut(s)	168, 376, 400, 497
HhaI	GCGC	4 cut(s)	164, 189, 344, 445
Hin1I	GRCGYC	3 cut(s)	387, 411, 489
Hin1II	CATG	4 cut(s)	91, 112, 223, 418
Hin6I	GCGC	4 cut(s)	162, 187, 342, 443
HinP1I	GCGC	4 cut(s)	162, 187, 342, 443
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	2 cut(s)	262, 269
HpaII	CCGG	2 cut(s)	408, 460
HphI	GGTGA	2 cut(s)	130, 397
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	41, 211, 470, 505
Hpy188III	TCNNGA	2 cut(s)	266, 415
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	5 cut(s)	162, 260, 323, 442, 566
HpyAV	CCTTC	3 cut(s)	355, 370, 463
HpyCH4V	TGCA	3 cut(s)	91, 517, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 348, 357, 449
HpyF3I	CTNAG	1 cut(s)	114
Hsp92I	GRCGYC	3 cut(s)	387, 411, 489
Hsp92II	CATG	4 cut(s)	91, 112, 223, 418
HspAI	GCGC	4 cut(s)	162, 187, 342, 443
Ksp22I	TGATCA	1 cut(s)	580
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	36, 580
LguI	GCTCTTC	1 cut(s)	504
LpnPI	CCDG	9 cut(s)	209, 283, 287, 293, 320, 377, 404, 421, 473
Lsp1109I	GCAGC	3 cut(s)	55, 416, 501
LweI	GCATC	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	38, 582
MboI	GATC	2 cut(s)	36, 580
MboII	GAAGA	4 cut(s)	172, 244, 521, 544
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	256, 278
MmeI	TCCRAC	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	277, 351
MspI	CCGG	2 cut(s)	408, 460
MspR9I	CCNGG	3 cut(s)	308, 392, 461
MvaI	CCWGG	2 cut(s)	308, 392
MvnI	CGCG	4 cut(s)	162, 187, 351, 445
MwoI	GCNNNNNNNGC	4 cut(s)	110, 348, 357, 449
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	36, 580
NlaIII	CATG	4 cut(s)	91, 112, 223, 418
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	2 cut(s)	91, 223
PaeI	GCATGC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	362
PagI	TCATGA	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	3 cut(s)	246, 264, 408
PdmI	GAANNNNTTC	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	390
PkrI	GCNGC	5 cut(s)	70, 106, 353, 431, 516
PleI	GAGTC	2 cut(s)	256, 277
PpsI	GAGTC	2 cut(s)	256, 277
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	306, 390
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	306, 390
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	3 cut(s)	300, 310, 358
PspXI	VCTCGAGB	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	23, 32
RsaNI	GTAC	2 cut(s)	22, 31
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	291
SacII	CCGCGG	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	504
SatI	GCNGC	5 cut(s)	69, 105, 352, 430, 515
Sau3AI	GATC	2 cut(s)	36, 580
Sau96I	GGNCC	3 cut(s)	300, 310, 358
SchI	GAGTC	2 cut(s)	256, 278
ScrFI	CCNGG	3 cut(s)	308, 392, 461
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	362
Sfr303I	CCGCGG	1 cut(s)	352
SgrAI	CRCCGGYG	1 cut(s)	407
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	4 cut(s)	105, 295, 349, 351
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	306, 390, 459
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	7 cut(s)	14, 84, 255, 291, 321, 363, 564
TauI	GCSGC	2 cut(s)	107, 354
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	68, 429, 514
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	2 cut(s)	137, 500
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	310
XceI	RCATGY	2 cut(s)	91, 223
XhoI	CTCGAG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.