Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001754.1

Orthogroup ID

OG0015351

Physical Location & Seq

Genomic Coordinates Forward (+)

26698 .. 34074

Gene Structure 7377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

atgttcactctgcttcgcaaaaccccatcactgaaaaacccagaacccagtttctcaattccactacatcacaacctaaccacctcaccacccccgcaaccgcctcaagacgccgcctttgccacccttatcctcaaatccgacccgcaatctctcccccggatcctccacgacccgaacatccactggacccccgactccgtcaacaaaaccctcaaacgcctctggaaccatggccccaaagccctcgtcttcttcaaaaccctcgaccgccaccccacctacaccccctcctcctcctcctacgaccacgccgtcgacatcgccggccgtttacgcgactacaagtccctctgggccttcgtcgcccgaatgcgcgcccgccgggtcggccccggtccgagaaccttcgccatcatcaccgagaggtacgtcgccgccggcaaacccgatagagctgtcaaagtttttctctctatgcatgaacatgggtgccctcaggatttgaattctttcaatactgttcttgatgtgctctgtaaagctaagcgagttgaaaaggcttacaatttgtttaaggtgtttcggggaagatttagagctgattgtgttagttacaatgtgattgttaatgggtggtgtttgattaagaggactcctaaggctttagaggttttgagggagatggttgagaggggaatcgagccgagtttgtttacttataatgtgatgcttaaagggtatcttagagctgggcaggttaaggaggcgtgggagttttttttggaaatgaagaagaggaagtgtgagattgatgttgttacttatactactctggttcatgggtttggtgttgtcggggaggttaagaaggcgaggaggattttcgatgggatggttgaggagggggtcctgccttcagttgcgacttacaatgcattgattcaggttttgtgtaagaaggatagcgtggagaatgcggtggtggtttttgaggagatggtgagtaagggttatgtccctaatgtgacgacgtataatgtgttgattagagggctgtgtcatgctggtgatatggagagggggatggagttgatggggaggatgaagggtgatgagtgtgagccaaatgttcagacgtataatgttgtgattcggtacttttgtgatgatggggagattgataaggcgttggatgtgtttgagaagatgggtaggggagagtgcttgcctaatttggatacatacaatgtgttgattagtgccatgtttgtgaggaagaaacctgaagatttgttagtggcagggaagttgctgattgagatggttgatagaggatttttgccccgcaagtacacttttaatcgggttctggatgggcttttgttaactggtaatcaaggttttgcaaaagagattctgagattgcagagcaaatgtggccgtcttcctcgtcagctggtctcaaactggaatgtgtcaacaacttacagggcagtgttgagggaggtaaatttgggggatttatctactcatcgttcagatgcttatttaccaggtcgtttcattgccttgtacgatcgagaaggcgtgacctccgtcggcttggacgacgccgctgcaagattaggtgtggagaggcgacggatctacgatatcgttaatgtgcttgagagcgttggggttctttcgcgaaaggcaaagaaccagtatacttggaaagggtttggggcaatccctattgctttacaggatctgaaggaagagggtctgaaagagaacttcaatactttccatggcaatctccagggcagtgatgatccgaaatgttcgcagggttcagatgatgaggaaggtgatgagagtggtcctgcaactgtcagtcagaatgagaaccccggtgtccatcccaaatcttcaggaaactcgaaaaatgataatagaagggaaaagtctctggcacttcttacacagaattttgtgaagctcttcgtctgctccactgtagaatccatctcccttgatgaagctgcaaggttattacttggggatgcacacaatgcatctgtaatgagaagagctgaaactcttgcattttctctacttgatgaagcagctaaagtaaggcggatttatgatattgcaaatgttttgtcctccatgaatcttattgaaaagacccacacagcagatacaaggaagccggcatacaaatggttgggattgaaaggaaaagatgccgtgagttcagcttcagacgagtctagaaaaagagcctttggaacagacatcacaaacgtcagttgtaagaggggaaaagtagaatcttctactgctgggaaattggaagctcagaaacaaaagctacatgagactacagtacggcaacgtgagagacgtgagagcacagtacataaggttgataggaacaatttagaggactcgaaagaaaatacaaagagctaccagtttggcccttttgctccagttactattgccagagctgggaatttcaacatgaagaaggttgactgggacaatttgtcgtctacttaccgtccccagtatcagaatcaagctttgcaaagcactatggtgcaaggttttactcggcaaccccaacccatttatcctgcaactccctccactcccgcttccaccccacctcatacaccggccaacatcccacctatcacttttggttccatttcaacacctaccactgcctggcaaggatggattttgatggcagagaggtacttgagaacccagcgaataccgccgtcagaaaaagtggccatcgctgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006355 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008156 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010948 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032875 GO:0032876 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045786 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1903506 GO:2000104 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E2F_TDP

Protein Analysis

936

Amino Acids

105.15

Weight (kDa)

9.31

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	199 - 248	1.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	202 - 249	3.1e-12	PPR repeat family
PPR_3	PF13812	225 - 270	5.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	232 - 265	2.8e-07	PPR repeat
PPR_2	PF13041	239 - 283	2.6e-17	PPR repeat family
PPR	PF01535	239 - 269	2.3e-08	PPR repeat
TPR_24	PF23276	257 - 365	4.6e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	262 - 318	8.1e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	268 - 300	4e-07	PPR repeat
PPR_2	PF13041	282 - 320	4.5e-07	PPR repeat family
PPR_long	PF17177	288 - 419	1.2e-13	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	303 - 335	1e-08	PPR repeat
PPR_2	PF13041	306 - 355	6.5e-18	PPR repeat family
PPR	PF01535	310 - 338	1.5e-06	PPR repeat
PPR_3	PF13812	330 - 388	1.1e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	337 - 370	7.4e-09	PPR repeat
PPR_2	PF13041	341 - 390	1.4e-14	PPR repeat family
PPR	PF01535	345 - 374	1.1e-06	PPR repeat
PPR_1	PF12854	373 - 404	3.5e-09	PPR repeat
PPR_2	PF13041	376 - 423	2.9e-14	PPR repeat family
WHD_E2F_TDP	PF02319	521 - 575	1.1e-16	E2F/DP family winged-helix DNA-binding domain
WHD_E2F_TDP	PF02319	649 - 741	8.9e-18	E2F/DP family winged-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74900
fragaria_vesca	FvH4_5g16320
malus_domestica	MD06G1181800.v1.1 MD14G1187700.v1.1
prunus_persica	Prupe.5G180100_v2.0.a1
pyrus_communis	pycom06g16080 pycom14g15560
rosa_chinensis	RchiOBHm_Chr7g0179811
rosa_laevigata	RLG00000005322
rosa_multiflora	Rmu_sc0001754.1_g000006 Rmu_sc0004156.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273450
rosa_rugosa	Rorug06G0428500
rosa_samantha	Rh7CG029100 Rh7DG028600
rosa_wichuraiana	Rw7G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	2727
AccI	GTMKAC	3 cut(s)	318, 1712, 2549
AccII	CGCG	3 cut(s)	339, 378, 1693
AclWI	GGATC	5 cut(s)	157, 170, 1655, 1761, 1814
AcoI	YGGCCR	4 cut(s)	328, 1441, 2676, 2796
AcsI	RAATTY	4 cut(s)	508, 1513, 1975, 2509
AcuI	CTGAAG	5 cut(s)	903, 1308, 1778, 1902, 2238
AcyI	GRCGYC	2 cut(s)	111, 1614
AfaI	GTAC	7 cut(s)	431, 1160, 1355, 1577, 2382, 2412, 2759
AfiI	CCNNNNNNNGG	2 cut(s)	2505, 2727
AgsI	TTSAA	9 cut(s)	259, 508, 517, 557, 1786, 2174, 2227, 2515, 2712
AhdI	GACNNNNNGTC	2 cut(s)	346, 2542
AjiI	CACGTC	1 cut(s)	2399
AjnI	CCWGG	3 cut(s)	1555, 1806, 2726
AleI	CACNNNNGTG	1 cut(s)	2594
Alw21I	GWGCWC	2 cut(s)	537, 2408
Alw26I	GTCTC	4 cut(s)	1468, 1959, 2366, 2389
AlwI	GGATC	5 cut(s)	157, 170, 1655, 1761, 1814
AlwNI	CAGNNNCTG	1 cut(s)	1756
AoxI	GGCC	8 cut(s)	235, 328, 357, 391, 1441, 2473, 2676, 2796
ApeKI	GCWGC	3 cut(s)	1619, 2030, 2114
ApoI	RAATTY	4 cut(s)	508, 1513, 1975, 2509
ArsI	GACNNNNNNTTYG	6 cut(s)	101, 133, 234, 266, 2138, 2170
Asp700I	GAANNNNTTC	2 cut(s)	512, 1988
AspLEI	GCGC	2 cut(s)	378, 380
AspS9I	GGNCC	8 cut(s)	189, 236, 357, 392, 398, 910, 1868, 2474
AsuC2I	CCSGG	4 cut(s)	160, 386, 396, 1899
AsuHPI	GGTGA	6 cut(s)	78, 412, 1015, 1082, 1124, 1868
AvaII	GGWCC	4 cut(s)	189, 398, 910, 1868
AxyI	CCTNAGG	2 cut(s)	498, 660
BaeGI	GKGCMC	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	1150, 1183
BalI	TGGCCA	1 cut(s)	2798
BamHI	GGATCC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	492
BarI	GAAGNNNNNNTAC	2 cut(s)	2192, 2224
BbsI	GAAGAC	2 cut(s)	244, 1439
Bbv12I	GWGCWC	2 cut(s)	537, 2408
BbvI	GCAGC	3 cut(s)	1606, 2017, 2126
BceAI	ACGGC	6 cut(s)	299, 315, 1428, 2225, 2399, 2767
BcgI	CGANNNNNNTGC	2 cut(s)	1601, 1635
BciT130I	CCWGG	3 cut(s)	1557, 1808, 2728
BciVI	GTATCC	1 cut(s)	1234
BcnI	CCSGG	4 cut(s)	160, 386, 396, 1899
BcoDI	GTCTC	4 cut(s)	1468, 1959, 2366, 2389
BfaI	CTAG	2 cut(s)	2265, 2809
BfmI	CTRYAG	2 cut(s)	2004, 2376
BfuAI	ACCTGC	1 cut(s)	748
BfuI	GTATCC	1 cut(s)	1234
BglI	GCCNNNNNGGC	1 cut(s)	390
BisI	GCNGC	6 cut(s)	114, 438, 1617, 1620, 2031, 2115
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	6 cut(s)	115, 439, 1618, 1621, 2032, 2116
Bme1390I	CCNGG	7 cut(s)	160, 386, 396, 1557, 1808, 1899, 2728
Bme18I	GGWCC	4 cut(s)	189, 398, 910, 1868
BmeRI	GACNNNNNGTC	2 cut(s)	346, 2542
BmgBI	CACGTC	1 cut(s)	2399
BmgT120I	GGNCC	8 cut(s)	189, 236, 357, 392, 398, 910, 1868, 2474
BmiI	GGNNCC	8 cut(s)	164, 191, 230, 238, 394, 494, 911, 2704
BmrFI	CCNGG	7 cut(s)	160, 386, 396, 1557, 1808, 1899, 2728
BmrI	ACTGGG	3 cut(s)	42, 2542, 2557
BmsI	GCATC	5 cut(s)	720, 1534, 2041, 2072, 2227
BmuI	ACTGGG	3 cut(s)	42, 2542, 2557
BoxI	GACNNNNGTC	1 cut(s)	1598
BpiI	GAAGAC	2 cut(s)	244, 1439
BpmI	CTGGAG	2 cut(s)	1790, 2469
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	3 cut(s)	90, 1691, 2782
BpuMI	CCSGG	4 cut(s)	160, 386, 396, 1899
BsaHI	GRCGYC	2 cut(s)	111, 1614
BsaI	GGTCTC	1 cut(s)	1468
BsaJI	CCNNGG	6 cut(s)	158, 232, 394, 1795, 1807, 1897
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	2505, 2727
Bse118I	RCCGGY	4 cut(s)	326, 440, 2203, 2674
Bse1I	ACTGG	9 cut(s)	48, 191, 1396, 1475, 1708, 2467, 2486, 2537, 2563
Bse21I	CCTNAGG	2 cut(s)	498, 660
Bse3DI	GCAATG	1 cut(s)	1566
BseBI	CCWGG	3 cut(s)	1557, 1808, 2728
BseDI	CCNNGG	6 cut(s)	158, 232, 394, 1795, 1807, 1897
BseLI	CCNNNNNNNGG	2 cut(s)	2505, 2727
BseMI	GCAATG	1 cut(s)	1566
BseMII	CTCAG	3 cut(s)	512, 1412, 2366
BseNI	ACTGG	9 cut(s)	48, 191, 1396, 1475, 1708, 2467, 2486, 2537, 2563
BsePI	GCGCGC	1 cut(s)	376
BseRI	GAGGAG	6 cut(s)	283, 286, 289, 892, 917, 1010
BseSI	GKGCMC	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	1606, 2017, 2126
BseYI	CCCAGC	4 cut(s)	752, 2336, 2504, 2769
Bsh1236I	CGCG	3 cut(s)	339, 378, 1693
Bsh1285I	CGRYCG	3 cut(s)	271, 331, 1582
BshFI	GGCC	8 cut(s)	237, 330, 359, 393, 1443, 2475, 2678, 2798
BshNI	GGYRCC	1 cut(s)	492
BsiEI	CGRYCG	3 cut(s)	271, 331, 1582
BsiHKAI	GWGCWC	2 cut(s)	537, 2408
BsiSI	CCGG	8 cut(s)	160, 327, 385, 396, 441, 1899, 2204, 2675
BslFI	GGGAC	4 cut(s)	334, 1004, 2544, 2549
BslI	CCNNNNNNNGG	2 cut(s)	2505, 2727
BsmAI	GTCTC	4 cut(s)	1468, 1959, 2366, 2389
BsmBI	CGTCTC	1 cut(s)	2389
BsmFI	GGGAC	4 cut(s)	334, 1004, 2544, 2549
BsmI	GAATGC	2 cut(s)	378, 982
BsnI	GGCC	8 cut(s)	237, 330, 359, 393, 1443, 2475, 2678, 2798
Bso31I	GGTCTC	1 cut(s)	1468
Bsp1286I	GDGCHC	3 cut(s)	497, 537, 2408
Bsp143I	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp19I	CCATGG	2 cut(s)	232, 1795
Bsp68I	TCGCGA	1 cut(s)	1693
BspANI	GGCC	8 cut(s)	237, 330, 359, 393, 1443, 2475, 2678, 2798
BspCNI	CTCAG	3 cut(s)	511, 1413, 2365
BspFNI	CGCG	3 cut(s)	339, 378, 1693
BspLI	GGNNCC	8 cut(s)	164, 191, 230, 238, 394, 494, 911, 2704
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	5 cut(s)	157, 170, 1655, 1761, 1814
BspQI	GCTCTTC	2 cut(s)	1994, 2071
BspT107I	GGYRCC	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	1468
BsrDI	GCAATG	1 cut(s)	1566
BsrFI	RCCGGY	4 cut(s)	326, 440, 2203, 2674
BsrI	ACTGG	9 cut(s)	48, 191, 1396, 1475, 1708, 2467, 2486, 2537, 2563
BssAI	RCCGGY	4 cut(s)	326, 440, 2203, 2674
BssECI	CCNNGG	6 cut(s)	158, 232, 394, 1795, 1807, 1897
BssHII	GCGCGC	1 cut(s)	376
BssMI	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
BssNAI	GTATAC	1 cut(s)	1713
BssNI	GRCGYC	2 cut(s)	111, 1614
BssT1I	CCWWGG	2 cut(s)	232, 1795
Bst1107I	GTATAC	1 cut(s)	1713
Bst2UI	CCWGG	3 cut(s)	1557, 1808, 2728
Bst4CI	ACNGT	6 cut(s)	523, 1879, 2005, 2380, 2410, 2558
Bst6I	CTCTTC	4 cut(s)	791, 1758, 1994, 2071
BstACI	GRCGYC	2 cut(s)	111, 1614
BstAPI	GCANNNNNTGC	1 cut(s)	2060
BstC8I	GCNNGC	6 cut(s)	328, 378, 382, 442, 1229, 2205
BstDEI	CTNAG	6 cut(s)	498, 546, 660, 746, 1421, 2352
BstDSI	CCRYGG	2 cut(s)	232, 1795
BstFNI	CGCG	3 cut(s)	339, 378, 1693
BstHHI	GCGC	2 cut(s)	378, 380
BstKTI	GATC	5 cut(s)	165, 1582, 1650, 1756, 1822
BstMAI	GTCTC	4 cut(s)	1468, 1959, 2366, 2389
BstMBI	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
BstMCI	CGRYCG	3 cut(s)	271, 331, 1582
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 336, 365, 390, 1440, 2060, 2779
BstNI	CCWGG	3 cut(s)	1557, 1808, 2728
BstPAI	GACNNNNGTC	1 cut(s)	1598
BstSCI	CCNGG	7 cut(s)	158, 384, 394, 1555, 1806, 1897, 2726
BstSFI	CTRYAG	2 cut(s)	2004, 2376
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	3 cut(s)	339, 378, 1693
BstV1I	GCAGC	3 cut(s)	1606, 2017, 2126
BstV2I	GAAGAC	2 cut(s)	244, 1439
BstX2I	RGATCY	3 cut(s)	162, 1647, 1753
BstYI	RGATCY	3 cut(s)	162, 1647, 1753
BstZ17I	GTATAC	1 cut(s)	1713
BstZI	CGGCCG	1 cut(s)	328
Bsu36I	CCTNAGG	2 cut(s)	498, 660
BsuI	GTATCC	1 cut(s)	1234
BsuRI	GGCC	8 cut(s)	237, 330, 359, 393, 1443, 2475, 2678, 2798
BtgI	CCRYGG	2 cut(s)	232, 1795
BtgZI	GCGATG	2 cut(s)	307, 2785
BtrI	CACGTC	1 cut(s)	2399
BtsI	GCAGTG	3 cut(s)	1503, 1819, 2721
BtsIMutI	CAGTG	6 cut(s)	29, 184, 1503, 1819, 2001, 2721
BtuMI	TCGCGA	1 cut(s)	1693
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	6 cut(s)	328, 378, 382, 442, 1229, 2205
CaiI	CAGNNNCTG	1 cut(s)	1756
CfoI	GCGC	2 cut(s)	378, 380
Cfr10I	RCCGGY	4 cut(s)	326, 440, 2203, 2674
Cfr13I	GGNCC	8 cut(s)	189, 236, 357, 392, 398, 910, 1868, 2474
CpoI	CGGWCCG	1 cut(s)	398
CseI	GACGC	2 cut(s)	119, 1622
CsiI	ACCWGGT	1 cut(s)	1555
Csp6I	GTAC	7 cut(s)	430, 1159, 1354, 1576, 2381, 2411, 2758
CspI	CGGWCCG	1 cut(s)	398
CviQI	GTAC	7 cut(s)	430, 1159, 1354, 1576, 2381, 2411, 2758
DdeI	CTNAG	6 cut(s)	498, 546, 660, 746, 1421, 2352
DpnI	GATC	5 cut(s)	164, 1581, 1649, 1755, 1821
DpnII	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
DrdI	GACNNNNNNGTC	1 cut(s)	314
DriI	GACNNNNNGTC	2 cut(s)	346, 2542
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	4 cut(s)	328, 1441, 2676, 2796
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	4 cut(s)	791, 1758, 1994, 2071
Eam1105I	GACNNNNNGTC	2 cut(s)	346, 2542
EarI	CTCTTC	4 cut(s)	791, 1758, 1994, 2071
EciI	GGCGGA	1 cut(s)	2143
EclXI	CGGCCG	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	232, 1795
Eco31I	GGTCTC	1 cut(s)	1468
Eco32I	GATATC	1 cut(s)	1657
Eco47I	GGWCC	4 cut(s)	189, 398, 910, 1868
Eco52I	CGGCCG	1 cut(s)	328
Eco57I	CTGAAG	5 cut(s)	903, 1308, 1778, 1902, 2238
Eco81I	CCTNAGG	2 cut(s)	498, 660
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	3 cut(s)	1555, 1806, 2726
EcoRV	GATATC	1 cut(s)	1657
EcoT14I	CCWWGG	2 cut(s)	232, 1795
EcoT22I	ATGCAT	3 cut(s)	483, 940, 2065
ErhI	CCWWGG	2 cut(s)	232, 1795
Esp3I	CGTCTC	1 cut(s)	2389
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	4 cut(s)	334, 1004, 2544, 2549
FauI	CCCGC	5 cut(s)	102, 153, 389, 1355, 2659
FblI	GTMKAC	3 cut(s)	318, 1712, 2549
Fnu4HI	GCNGC	6 cut(s)	114, 438, 1617, 1620, 2031, 2115
Fsp4HI	GCNGC	6 cut(s)	114, 438, 1617, 1620, 2031, 2115
FspBI	CTAG	2 cut(s)	2265, 2809
GlaI	GCGC	2 cut(s)	377, 379
GluI	GCNGC	6 cut(s)	114, 438, 1617, 1620, 2031, 2115
GsaI	CCCAGC	4 cut(s)	756, 2340, 2508, 2773
GsuI	CTGGAG	2 cut(s)	1790, 2469
HaeIII	GGCC	8 cut(s)	237, 330, 359, 393, 1443, 2475, 2678, 2798
HapII	CCGG	8 cut(s)	160, 327, 385, 396, 441, 1899, 2204, 2675
HgaI	GACGC	2 cut(s)	119, 1622
HhaI	GCGC	2 cut(s)	378, 380
Hin1I	GRCGYC	2 cut(s)	111, 1614
Hin6I	GCGC	2 cut(s)	376, 378
HinP1I	GCGC	2 cut(s)	376, 378
HincII	GTYRAC	5 cut(s)	205, 319, 1389, 1482, 2530
HindII	GTYRAC	5 cut(s)	205, 319, 1389, 1482, 2530
HindIII	AAGCTT	1 cut(s)	2577
HpaI	GTTAAC	1 cut(s)	1389
HpaII	CCGG	8 cut(s)	160, 327, 385, 396, 441, 1899, 2204, 2675
HphI	GGTGA	6 cut(s)	78, 412, 1015, 1082, 1124, 1868
Hpy188III	TCNNGA	9 cut(s)	107, 226, 500, 527, 1373, 1583, 1692, 1920, 2265
Hpy99I	CGWCG	7 cut(s)	320, 368, 437, 1036, 1604, 1616, 1647
HpyCH4III	ACNGT	6 cut(s)	523, 1879, 2005, 2380, 2410, 2558
HpyCH4IV	ACGT	6 cut(s)	432, 1034, 1139, 2298, 2389, 2398
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 336, 365, 390, 1440, 2060, 2779
HpyF3I	CTNAG	6 cut(s)	498, 546, 660, 746, 1421, 2352
HpySE526I	ACGT	6 cut(s)	432, 1034, 1139, 2298, 2389, 2398
Hsp92I	GRCGYC	2 cut(s)	111, 1614
HspAI	GCGC	2 cut(s)	376, 378
KroI	GCCGGC	3 cut(s)	326, 440, 2203
KroNI	GCCGGC	3 cut(s)	328, 442, 2205
KspAI	GTTAAC	1 cut(s)	1389
Kzo9I	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
LguI	GCTCTTC	2 cut(s)	1994, 2071
LmnI	GCTCC	2 cut(s)	2003, 2488
Lsp1109I	GCAGC	3 cut(s)	1606, 2017, 2126
LweI	GCATC	5 cut(s)	720, 1534, 2041, 2072, 2227
MabI	ACCWGGT	1 cut(s)	1555
MaeI	CTAG	2 cut(s)	2265, 2809
MaeII	ACGT	6 cut(s)	432, 1034, 1139, 2298, 2389, 2398
MaeIII	GTNAC	5 cut(s)	614, 820, 1027, 1591, 2488
MalI	GATC	5 cut(s)	164, 1581, 1649, 1755, 1821
MboI	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
MflI	RGATCY	3 cut(s)	162, 1647, 1753
MhlI	GDGCHC	3 cut(s)	497, 537, 2408
MlsI	TGGCCA	1 cut(s)	2798
MluNI	TGGCCA	1 cut(s)	2798
MlyI	GAGTC	4 cut(s)	191, 649, 2270, 2435
MmeI	TCCRAC	2 cut(s)	165, 1173
Mox20I	TGGCCA	1 cut(s)	2798
Mph1103I	ATGCAT	3 cut(s)	483, 940, 2065
MroNI	GCCGGC	3 cut(s)	326, 440, 2203
MroXI	GAANNNNTTC	2 cut(s)	512, 1988
MscI	TGGCCA	1 cut(s)	2798
MseI	TTAA	9 cut(s)	576, 630, 648, 735, 762, 867, 1362, 1388, 1662
MslI	CAYNNNNRTG	5 cut(s)	486, 1068, 1271, 2212, 2594
Msp20I	TGGCCA	1 cut(s)	2798
MspA1I	CMGCKG	2 cut(s)	1459, 1619
MspI	CCGG	8 cut(s)	160, 327, 385, 396, 441, 1899, 2204, 2675
MspR9I	CCNGG	7 cut(s)	160, 386, 396, 1557, 1808, 1899, 2728
Mva1269I	GAATGC	2 cut(s)	378, 982
MvaI	CCWGG	3 cut(s)	1557, 1808, 2728
MvnI	CGCG	3 cut(s)	339, 378, 1693
MwoI	GCNNNNNNNGC	7 cut(s)	119, 336, 365, 390, 1440, 2060, 2779
NaeI	GCCGGC	3 cut(s)	328, 442, 2205
NciI	CCSGG	4 cut(s)	160, 386, 396, 1899
NcoI	CCATGG	2 cut(s)	232, 1795
NdeII	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
NgoMIV	GCCGGC	3 cut(s)	326, 440, 2203
NlaIV	GGNNCC	8 cut(s)	164, 191, 230, 238, 394, 494, 911, 2704
NmeAIII	GCCGAG	2 cut(s)	732, 2590
NmuCI	GTSAC	2 cut(s)	1027, 1591
NruI	TCGCGA	1 cut(s)	1693
NsiI	ATGCAT	3 cut(s)	483, 940, 2065
OliI	CACNNNNGTG	1 cut(s)	2594
PauI	GCGCGC	1 cut(s)	376
PciSI	GCTCTTC	2 cut(s)	1994, 2071
PcsI	WCGNNNNNNNCGW	3 cut(s)	312, 1608, 2395
PctI	GAATGC	2 cut(s)	378, 982
PdiI	GCCGGC	3 cut(s)	328, 442, 2205
PdmI	GAANNNNTTC	2 cut(s)	512, 1988
PfeI	GAWTC	8 cut(s)	699, 943, 1153, 1417, 2009, 2164, 2324, 2572
PflFI	GACNNNGTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	2727
PkrI	GCNGC	6 cut(s)	115, 439, 1618, 1621, 2032, 2116
Ple19I	CGATCG	1 cut(s)	1582
PleI	GAGTC	4 cut(s)	191, 649, 2269, 2435
PpsI	GAGTC	4 cut(s)	191, 649, 2269, 2435
PpuMI	RGGWCCY	1 cut(s)	910
PshAI	GACNNNNGTC	1 cut(s)	1598
PsiI	TTATAA	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	3 cut(s)	1555, 1806, 2726
PspFI	CCCAGC	4 cut(s)	752, 2336, 2504, 2769
PspGI	CCWGG	3 cut(s)	1555, 1806, 2726
PspN4I	GGNNCC	8 cut(s)	164, 191, 230, 238, 394, 494, 911, 2704
PspPI	GGNCC	8 cut(s)	189, 236, 357, 392, 398, 910, 1868, 2474
PspPPI	RGGWCCY	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	1756
PsuI	RGATCY	3 cut(s)	162, 1647, 1753
PsyI	GACNNNGTC	1 cut(s)	200
PteI	GCGCGC	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	1582
PvuII	CAGCTG	1 cut(s)	1459
RruI	TCGCGA	1 cut(s)	1693
RsaI	GTAC	7 cut(s)	431, 1160, 1355, 1577, 2382, 2412, 2759
RsaNI	GTAC	7 cut(s)	430, 1159, 1354, 1576, 2381, 2411, 2758
RseI	CAYNNNNRTG	5 cut(s)	486, 1068, 1271, 2212, 2594
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	317
SapI	GCTCTTC	2 cut(s)	1994, 2071
SaqAI	TTAA	9 cut(s)	576, 630, 648, 735, 762, 867, 1362, 1388, 1662
SatI	GCNGC	6 cut(s)	114, 438, 1617, 1620, 2031, 2115
Sau3AI	GATC	5 cut(s)	162, 1579, 1647, 1753, 1819
Sau96I	GGNCC	8 cut(s)	189, 236, 357, 392, 398, 910, 1868, 2474
SchI	GAGTC	4 cut(s)	191, 649, 2270, 2435
ScrFI	CCNGG	7 cut(s)	160, 386, 396, 1557, 1808, 1899, 2728
SduI	GDGCHC	3 cut(s)	497, 537, 2408
SexAI	ACCWGGT	1 cut(s)	1555
SfaNI	GCATC	5 cut(s)	720, 1534, 2041, 2072, 2227
SfcI	CTRYAG	2 cut(s)	2004, 2376
SinI	GGWCC	4 cut(s)	189, 398, 910, 1868
SmiMI	CAYNNNNRTG	5 cut(s)	486, 1068, 1271, 2212, 2594
SmlI	CTYRAG	3 cut(s)	105, 1670, 2761
SmoI	CTYRAG	3 cut(s)	105, 1670, 2761
SspMI	CTAG	2 cut(s)	2265, 2809
StyD4I	CCNGG	7 cut(s)	158, 384, 394, 1555, 1806, 1897, 2726
StyI	CCWWGG	2 cut(s)	232, 1795
TaaI	ACNGT	6 cut(s)	523, 1879, 2005, 2380, 2410, 2558
TaiI	ACGT	6 cut(s)	435, 1037, 1142, 2301, 2392, 2401
TaqI	TCGA	7 cut(s)	267, 318, 702, 888, 1582, 1928, 2444
TatI	WGTACW	2 cut(s)	1353, 2410
TauI	GCSGC	3 cut(s)	116, 440, 1619
TfiI	GAWTC	8 cut(s)	699, 943, 1153, 1417, 2009, 2164, 2324, 2572
Tru1I	TTAA	9 cut(s)	576, 630, 648, 735, 762, 867, 1362, 1388, 1662
Tru9I	TTAA	9 cut(s)	576, 630, 648, 735, 762, 867, 1362, 1388, 1662
TscAI	CASTG	6 cut(s)	36, 191, 1503, 1819, 2008, 2728
TseFI	GTSAC	2 cut(s)	1027, 1591
TseI	GCWGC	3 cut(s)	1619, 2030, 2114
Tsp45I	GTSAC	2 cut(s)	1027, 1591
TspDTI	ATGAA	9 cut(s)	498, 806, 830, 1121, 1555, 2040, 2124, 2177, 2534
TspGWI	ACGGA	3 cut(s)	190, 1588, 1660
TspRI	CASTG	6 cut(s)	36, 191, 1503, 1819, 2008, 2728
Tth111I	GACNNNGTC	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	2727
VpaK11BI	GGWCC	4 cut(s)	189, 398, 910, 1868
XapI	RAATTY	4 cut(s)	508, 1513, 1975, 2509
XbaI	TCTAGA	1 cut(s)	2264
XmiI	GTMKAC	3 cut(s)	318, 1712, 2549
XmnI	GAANNNNTTC	2 cut(s)	512, 1988
XspI	CTAG	2 cut(s)	2265, 2809
Zsp2I	ATGCAT	3 cut(s)	483, 940, 2065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.