Rmu_sc0001852.1_g000002

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001852.1
OG0015376
Physical Location & Seq
Reverse (-)
8551 .. 10599
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1131 bp
atggccataataagatcttatatcactctggcctttgtaggcttgattcttttgcccatcaacaacctgagctttttggcatatgctgctgagagtgaagggctgggagcttcttttatctttggtgattccctggttgattgcggaaacaataactacttgtcgacattgtccaaggcaaatcttcgtcctaatgggatggatttccagccatctggaggaaatcccaccgggcggttcaccaatggtagaaccattggtgatataattggtgaagaattgggacaaccaaactatgcagttccatttttagctcctaacgctacagggaaagcaatattgtatggggtgaattatgcttcaggaggagcagggatcatgaatgcaacaggaagaatatttgtaaatagggtggggatggatatccaaatcgattatttcaacgagacaaggaagcagattgaaaagctattgggtccatcaaaggcaaaagagtacatttcgaaaaggtctattttctcgatcacagttggagcaaatgactttctgaacaattacctactaccagtcctatccattggagcaagaatttctgagaccccagatgcattcattgatgatatgatcactcacttcagggctcaacttactagactttatcaattgggtgctcggaaatttgtgataggaaatgttggaccaataggttgcataccttaccagaagactatcaatcagcttgaccaagaccaatgtgtggagttgcctaataagcttgcgctgcagtacaatggcagattgaaggacttggttgctgagctgaatgataacctccctggatcaacatttgtttatgcaaacgtgtatgatctagtgtcggacctcattaccaactacgaaaaatatggattttcaacagcaagtagagcttgttgtggaaatggtggccaatatgcaggaatagttccatgtggtccaacatcaagtctgtgtactgatcggtccaagcatgtattctgggatccctaccatccaagtgaagctgccaacattatactcgccaaaaaattgcttgatggaaacacaagagttatttctccaatgaatctcaggcaacttcgagaccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

376

Amino Acids

41.05

Weight (kDa)

7.54

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 39 - 357 5.9e-35 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G23540
fragaria_vesca FvH4_1g14780
malus_domestica MD02G1161000.v1.1 MD15G1275100.v1.1
prunus_persica Prupe.7G142600_v2.0.a1
pyrus_communis pycom02g12710 pycom15g23820
rosa_chinensis RchiOBHm_Chr2g0103741
rosa_laevigata RLG00000017253
rosa_multiflora Rmu_sc0001852.1_g000002
rosa_roxburghii Rroxscaffold_2G00139440
rosa_rugosa Rorug02G0117000
rosa_samantha Rh2AG165800 Rh2BG173100 Rh2CG171800
rosa_wichuraiana Rw2G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 757
AccI GTMKAC 1 cut(s) 164
AciI CCGC 2 cut(s) 144, 235
AclWI GGATC 4 cut(s) 383, 847, 1016, 1029
AcoI YGGCCR 2 cut(s) 3, 946
AcsI RAATTY 2 cut(s) 588, 677
AcuI CTGAAG 2 cut(s) 345, 619
AfaI GTAC 3 cut(s) 497, 788, 994
AfiI CCNNNNNNNGG 3 cut(s) 218, 234, 757
AflIII ACRYGT 1 cut(s) 861
AgsI TTSAA 4 cut(s) 442, 464, 802, 915
AjnI CCWGG 2 cut(s) 132, 835
AjuI GAANNNNNNNTTGG 2 cut(s) 998, 1030
AluBI AGCT 9 cut(s) 72, 110, 314, 469, 739, 775, 820, 929, 1043
AluI AGCT 9 cut(s) 72, 110, 314, 469, 739, 775, 820, 929, 1043
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 440, 590, 1116
AlwI GGATC 4 cut(s) 383, 847, 1016, 1029
AoxI GGCC 3 cut(s) 3, 30, 946
ApeKI GCWGC 3 cut(s) 86, 781, 1043
ApoI RAATTY 2 cut(s) 588, 677
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 5 cut(s) 476, 698, 880, 974, 1002
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 5 cut(s) 137, 232, 272, 284, 361
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 5 cut(s) 476, 698, 880, 974, 1002
BalI TGGCCA 2 cut(s) 5, 948
BamHI GGATCC 1 cut(s) 1021
BanII GRGCYC 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 3 cut(s) 73, 768, 1030
BccI CCATC 7 cut(s) 65, 193, 220, 412, 487, 1038, 1070
BciT130I CCWGG 2 cut(s) 134, 837
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 440, 590, 1116
BfaI CTAG 2 cut(s) 651, 872
BfmI CTRYAG 2 cut(s) 324, 782
BglII AGATCT 1 cut(s) 14
BisI GCNGC 3 cut(s) 87, 782, 1044
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 3 cut(s) 88, 783, 1045
Bme1390I CCNGG 3 cut(s) 134, 232, 837
Bme18I GGWCC 5 cut(s) 476, 698, 880, 974, 1002
BmgT120I GGNCC 5 cut(s) 476, 698, 880, 974, 1002
BmiI GGNNCC 2 cut(s) 477, 1023
BmrFI CCNGG 3 cut(s) 134, 232, 837
BmsI GCATC 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 232
Bsa29I ATCGAT 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 422
BsaI GGTCTC 2 cut(s) 590, 1116
BsaJI CCNNGG 3 cut(s) 132, 174, 835
Bsc4I CCNNNNNNNGG 3 cut(s) 218, 234, 757
Bse1I ACTGG 1 cut(s) 566
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 2 cut(s) 134, 837
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 3 cut(s) 132, 174, 835
BseGI GGATG 3 cut(s) 204, 423, 1030
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 3 cut(s) 218, 234, 757
BseMII CTCAG 5 cut(s) 59, 81, 585, 807, 1123
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 3 cut(s) 73, 768, 1030
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 3 cut(s) 5, 32, 948
BshVI ATCGAT 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 3 cut(s) 218, 234, 757
BsmAI GTCTC 3 cut(s) 440, 590, 1116
BsmFI GGGAC 1 cut(s) 297
BsmI GAATGC 2 cut(s) 388, 608
BsnI GGCC 3 cut(s) 5, 32, 948
Bso31I GGTCTC 2 cut(s) 590, 1116
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 643, 673
Bsp143I GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 2 cut(s) 144, 235
BspANI GGCC 3 cut(s) 5, 32, 948
BspCNI CTCAG 5 cut(s) 60, 82, 586, 808, 1122
BspDI ATCGAT 1 cut(s) 432
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 477, 1023
BspMAI CTGCAG 1 cut(s) 786
BspPI GGATC 4 cut(s) 383, 847, 1016, 1029
BspT104I TTCGAA 1 cut(s) 503
BspTNI GGTCTC 2 cut(s) 590, 1116
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 3 cut(s) 132, 174, 835
BssMI GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 134, 837
Bst4CI ACNGT 1 cut(s) 529
BstAPI GCANNNNNTGC 1 cut(s) 86
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 5 cut(s) 68, 90, 594, 816, 1109
BstF5I GGATG 3 cut(s) 204, 423, 1030
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 8 cut(s) 17, 378, 525, 627, 842, 871, 1000, 1024
BstMAI GTCTC 3 cut(s) 440, 590, 1116
BstMBI GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
BstMWI GCNNNNNNNGC 5 cut(s) 86, 320, 772, 781, 926
BstNI CCWGG 2 cut(s) 134, 837
BstNSI RCATGY 1 cut(s) 1013
BstSCI CCNGG 3 cut(s) 132, 230, 835
BstSFI CTRYAG 2 cut(s) 324, 782
BstV1I GCAGC 3 cut(s) 73, 768, 1030
BstV2I GAAGAC 1 cut(s) 731
BstX2I RGATCY 2 cut(s) 14, 1021
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 14, 1021
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 3 cut(s) 5, 32, 948
BsuTUI ATCGAT 1 cut(s) 432
BtsCI GGATG 3 cut(s) 204, 423, 1030
Cac8I GCNNGC 1 cut(s) 777
CciI TCATGA 1 cut(s) 378
CfoI GCGC 1 cut(s) 781
Cfr13I GGNCC 5 cut(s) 476, 698, 880, 974, 1002
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 3 cut(s) 496, 787, 993
CviAII CATG 3 cut(s) 379, 969, 1010
CviQI GTAC 3 cut(s) 496, 787, 993
DdeI CTNAG 5 cut(s) 68, 90, 594, 816, 1109
DpnI GATC 8 cut(s) 16, 377, 524, 626, 841, 870, 999, 1023
DpnII GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
EaeI YGGCCR 2 cut(s) 3, 946
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 643
Eco31I GGTCTC 2 cut(s) 590, 1116
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 5 cut(s) 476, 698, 880, 974, 1002
Eco57I CTGAAG 2 cut(s) 345, 619
EcoRII CCWGG 2 cut(s) 132, 835
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 610
EcoT38I GRGCYC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 382, 972, 1013
FalI AAGNNNNNCTT 2 cut(s) 913, 945
FaqI GGGAC 1 cut(s) 297
FatI CATG 3 cut(s) 378, 968, 1009
FauNDI CATATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 624
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 87, 782, 1044
FokI GGATG 3 cut(s) 211, 430, 1017
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 3 cut(s) 87, 782, 1044
FspBI CTAG 2 cut(s) 651, 872
GlaI GCGC 1 cut(s) 780
GluI GCNGC 3 cut(s) 87, 782, 1044
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 3 cut(s) 5, 32, 948
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 781
Hin1II CATG 3 cut(s) 382, 972, 1013
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 3 cut(s) 46, 128, 1105
HpaII CCGG 1 cut(s) 231
HphI GGTGA 5 cut(s) 137, 232, 272, 284, 361
Hpy166II GTNNAC 3 cut(s) 165, 240, 993
Hpy188I TCNGA 4 cut(s) 549, 595, 675, 880
Hpy188III TCNNGA 5 cut(s) 216, 363, 379, 520, 1121
Hpy8I GTNNAC 3 cut(s) 165, 240, 993
HpyAV CCTTC 2 cut(s) 92, 796
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 7 cut(s) 299, 386, 608, 711, 784, 857, 956
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 320, 772, 781, 926
HpyF3I CTNAG 5 cut(s) 68, 90, 594, 816, 1109
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 3 cut(s) 382, 972, 1013
HspAI GCGC 1 cut(s) 779
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
LmnI GCTCC 5 cut(s) 107, 319, 368, 533, 581
Lsp1109I GCAGC 3 cut(s) 73, 768, 1030
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 651, 872
MaeII ACGT 1 cut(s) 861
MalI GATC 8 cut(s) 16, 377, 524, 626, 841, 870, 999, 1023
MboI GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
MboII GAAGA 4 cut(s) 176, 287, 405, 736
MfeI CAATTG 1 cut(s) 662
MflI RGATCY 2 cut(s) 14, 1021
MhlI GDGCHC 2 cut(s) 643, 673
MlsI TGGCCA 2 cut(s) 5, 948
MluCI AATT 8 cut(s) 267, 278, 352, 553, 588, 662, 677, 1067
MluNI TGGCCA 2 cut(s) 5, 948
MmeI TCCRAC 4 cut(s) 511, 676, 858, 1001
MnlI CCTC 4 cut(s) 212, 359, 842, 893
Mox20I TGGCCA 2 cut(s) 5, 948
Mph1103I ATGCAT 1 cut(s) 610
MscI TGGCCA 2 cut(s) 5, 948
MseI TTAA 1 cut(s) 1129
MslI CAYNNNNRTG 1 cut(s) 1035
Msp20I TGGCCA 2 cut(s) 5, 948
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 134, 232, 837
MunI CAATTG 1 cut(s) 662
Mva1269I GAATGC 2 cut(s) 388, 608
MvaI CCWGG 2 cut(s) 134, 837
MwoI GCNNNNNNNGC 5 cut(s) 86, 320, 772, 781, 926
NciI CCSGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 82
NdeII GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
NlaIII CATG 3 cut(s) 382, 972, 1013
NlaIV GGNNCC 2 cut(s) 477, 1023
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 1 cut(s) 1013
NspV TTCGAA 1 cut(s) 503
PagI TCATGA 1 cut(s) 378
PctI GAATGC 2 cut(s) 388, 608
PfeI GAWTC 3 cut(s) 46, 128, 1105
PflFI GACNNNGTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 757
PkrI GCNGC 3 cut(s) 88, 783, 1045
Psp6I CCWGG 2 cut(s) 132, 835
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 2 cut(s) 132, 835
PspN4I GGNNCC 2 cut(s) 477, 1023
PspPI GGNCC 5 cut(s) 476, 698, 880, 974, 1002
PstI CTGCAG 1 cut(s) 786
PsuI RGATCY 2 cut(s) 14, 1021
PsyI GACNNNGTC 1 cut(s) 169
RsaI GTAC 3 cut(s) 497, 788, 994
RsaNI GTAC 3 cut(s) 496, 787, 993
RseI CAYNNNNRTG 1 cut(s) 1035
SalI GTCGAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 1129
SatI GCNGC 3 cut(s) 87, 782, 1044
Sau3AI GATC 8 cut(s) 14, 375, 522, 624, 839, 868, 997, 1021
Sau96I GGNCC 5 cut(s) 476, 698, 880, 974, 1002
ScrFI CCNGG 3 cut(s) 134, 232, 837
SduI GDGCHC 2 cut(s) 643, 673
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 2 cut(s) 324, 782
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 5 cut(s) 476, 698, 880, 974, 1002
SmiMI CAYNNNNRTG 1 cut(s) 1035
Sse9I AATT 8 cut(s) 267, 278, 352, 553, 588, 662, 677, 1067
SsiI CCGC 2 cut(s) 144, 235
SspI AATATT 2 cut(s) 339, 399
SspMI CTAG 2 cut(s) 651, 872
StyD4I CCNGG 3 cut(s) 132, 230, 835
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 864
TaqI TCGA 5 cut(s) 164, 432, 503, 521, 1120
TaqII GACCGA 1 cut(s) 990
TasI AATT 8 cut(s) 267, 278, 352, 553, 588, 662, 677, 1067
TatI WGTACW 3 cut(s) 495, 786, 992
TfiI GAWTC 3 cut(s) 46, 128, 1105
Tru1I TTAA 1 cut(s) 1129
Tru9I TTAA 1 cut(s) 1129
TseI GCWGC 3 cut(s) 86, 781, 1043
TspDTI ATGAA 3 cut(s) 395, 601, 1118
Tth111I GACNNNGTC 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 757
VpaK11BI GGWCC 5 cut(s) 476, 698, 880, 974, 1002
XapI RAATTY 2 cut(s) 588, 677
XceI RCATGY 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 2 cut(s) 651, 872
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.